BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0050.15
(95 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17803 177 2e-46
AV778672 121 2e-29
AI967332 48 2e-07
TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 prote... 39 2e-04
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 36 0.001
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ... 35 0.002
CN825556 35 0.003
TC8200 weakly similar to UP|Q9JGS9 (Q9JGS9) PORF2b, partial (23%) 34 0.005
BP044185 34 0.005
TC7981 similar to UP|Q42487 (Q42487) Extensin like protein, comp... 34 0.005
TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, parti... 33 0.006
TC19378 weakly similar to UP|O80967 (O80967) At2g39140 protein, ... 31 0.031
AV416122 31 0.031
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 31 0.031
AW719349 31 0.041
TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3,... 31 0.041
AV768600 31 0.041
TC7974 similar to GB|AAA77675.1|607870|DSU11801 period protein {... 31 0.041
TC16900 similar to UP|Q39492 (Q39492) WP6 protein precursor, par... 31 0.041
TC11952 31 0.041
>TC17803
Length = 485
Score = 177 bits (450), Expect = 2e-46
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEF 73
GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEF
Sbjct: 47 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEF 226
Query: 74 DSKEKGDSPPLSKPTPEVVRSA 95
DSKEKGDSPPLSKPTPEVVRSA
Sbjct: 227 DSKEKGDSPPLSKPTPEVVRSA 292
>AV778672
Length = 383
Score = 121 bits (303), Expect = 2e-29
Identities = 57/61 (93%), Positives = 57/61 (93%)
Frame = -2
Query: 29 GMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEFDSKEKGDSPPLSKPT 88
GMPLNLLGLGVGGGCGVGVGLGWGFGSAF SKYRSSQIRFQGVEFDSKEKGDSPPL K
Sbjct: 301 GMPLNLLGLGVGGGCGVGVGLGWGFGSAFASKYRSSQIRFQGVEFDSKEKGDSPPLVKTH 122
Query: 89 P 89
P
Sbjct: 121 P 119
Score = 27.7 bits (60), Expect = 0.35
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3
Query: 76 KEKGDSPPLSKPTPEVVRSA 95
K K + LSKPTPEVVRSA
Sbjct: 159 KRKVTALRLSKPTPEVVRSA 100
>AI967332
Length = 390
Score = 48.1 bits (113), Expect = 2e-07
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Frame = +2
Query: 14 GFGVGCGFGVGWGF-------GGMPLNLLGLGVGGGCGVGVGLGWG 52
GFG GCG G G G G+P +G GVG GCGVG+G G+G
Sbjct: 131 GFGAGCGLGFGIGLLGGVGIGPGIPGFQVGFGVGAGCGVGLGFGYG 268
Score = 30.0 bits (66), Expect = 0.070
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 11 FLSGFGVGCGFGVGWGFG 28
F GFGVG G GVG GFG
Sbjct: 209 FQVGFGVGAGCGVGLGFG 262
Score = 26.6 bits (57), Expect = 0.77
Identities = 12/31 (38%), Positives = 15/31 (47%)
Frame = +2
Query: 38 GVGGGCGVGVGLGWGFGSAFGSKYRSSQIRF 68
G G GCG+G G+G G G Q+ F
Sbjct: 131 GFGAGCGLGFGIGLLGGVGIGPGIPGFQVGF 223
>TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 protein, partial
(12%)
Length = 431
Score = 38.5 bits (88), Expect = 2e-04
Identities = 20/43 (46%), Positives = 23/43 (52%)
Frame = -2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSA 56
G GVG GFG+ G G G G G G GVG+G G+G A
Sbjct: 265 GVGVGLGFGLWIGLGFWIWIGFGFGFGAGIGVGLGFWGGWGGA 137
Score = 35.4 bits (80), Expect = 0.002
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = -2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G G GCG GVG G G GL +G G + +G G+GFG+ G
Sbjct: 286 GGGRGCG-GVGVGLG------FGLWIGLGFWIWIGFGFGFGAGIG 173
Score = 26.6 bits (57), Expect = 0.77
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 11 FLSGFGVGCGFGVGWG---FGGMPLNLLGLGVGGGCGVG 46
F +G GVG GF GWG GG+ + + GGC G
Sbjct: 190 FGAGIGVGLGFWGGWGGAEMGGVVDDEV*GREDGGCNGG 74
Score = 24.3 bits (51), Expect = 3.8
Identities = 15/39 (38%), Positives = 18/39 (45%), Gaps = 5/39 (12%)
Frame = -3
Query: 25 WGFGGMPLNL-----LGLGVGGGCGVGVGLGWGFGSAFG 58
WG G + L LG G+G G G+GLG G G
Sbjct: 288 WGEGEVVEELEWV*GLGCGLG*DFGFGLGLGLDLGLELG 172
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 35.8 bits (81), Expect = 0.001
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 29/79 (36%)
Frame = +3
Query: 9 CLFLSGFGV-GCGFGVGWGFG--------GMPLNLLGLGV---------------GGGCG 44
CL LS FGV G G +G G G+ L L+GLG+ G GCG
Sbjct: 411 CLLLSPFGVSGVGIALGGALGCRFGRSRGGLSLGLVGLGLVHGLGGEGFDFRVRSGSGCG 590
Query: 45 -----VGVGLGWGFGSAFG 58
VGVGL G G G
Sbjct: 591 GGLVGVGVGLRIGLGGGIG 647
Score = 35.0 bits (79), Expect = 0.002
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +3
Query: 4 SHSGFCLFLSGFGVGCGFGVGWGF-------GGMPLNLLGLGVGGGCGVGVGLGWGFG 54
S G L L G G+ G G G GF G L+G+GVG G+G G+G+GFG
Sbjct: 489 SRGGLSLGLVGLGLVHGLG-GEGFDFRVRSGSGCGGGLVGVGVGLRIGLGGGIGFGFG 659
Score = 30.0 bits (66), Expect = 0.070
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGF 53
G +G G G+G+GFG L GV GGCG G GF
Sbjct: 615 GLRIGLGGGIGFGFG-----LRRFGV-GGCGCRRGWSGGF 716
>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
Length = 1127
Score = 35.4 bits (80), Expect = 0.002
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEF 73
G G+G G+G G GGM + G+G GG G GLG S FG + F+G +
Sbjct: 501 GMGMGGDGGLG-GLGGMG-GMGGMGGMGGLGGMEGLGGMDFSKFGGMGDDAMDDFEGSDD 674
Query: 74 DSKEKGDSPPLSKPT-PEVVRSA 95
+ +E SKP E V+SA
Sbjct: 675 EEQEVSKPGEASKPAEQEAVKSA 743
>CN825556
Length = 655
Score = 34.7 bits (78), Expect = 0.003
Identities = 20/45 (44%), Positives = 23/45 (50%)
Frame = -3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G+G G G+G GWG G G G G GCG G G G G+ G
Sbjct: 548 GWGWGWGWG*GWG*G------WG*GCGCGCGCGCGSEGGGGTGCG 432
Score = 30.0 bits (66), Expect = 0.070
Identities = 19/52 (36%), Positives = 21/52 (39%)
Frame = -3
Query: 7 GFCLFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
GFC G G G G G GGG G G G GWG+G +G
Sbjct: 629 GFCSGSPGEGSGASSG*G------------RDAGGGTGWGWGWGWGWG*GWG 510
Score = 26.6 bits (57), Expect = 0.77
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVG 46
G+G GCG G G G G G G GCG G
Sbjct: 506 GWG*GCGCGCGCGCGSEG------GGGTGCGGG 426
Score = 26.2 bits (56), Expect = 1.0
Identities = 17/42 (40%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Frame = -3
Query: 18 GCGFGVGWGF-GGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
GCG GF G P G G G G G GWG+G +G
Sbjct: 638 GCG-----GFCSGSPGEGSGASSG*GRDAGGGTGWGWGWGWG 528
>TC8200 weakly similar to UP|Q9JGS9 (Q9JGS9) PORF2b, partial (23%)
Length = 930
Score = 33.9 bits (76), Expect = 0.005
Identities = 18/41 (43%), Positives = 23/41 (55%)
Frame = -1
Query: 12 LSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWG 52
L GF V FG G N +G+GVG G G+G+G+G G
Sbjct: 201 LFGFDVCYAFGCG--------NEIGIGVGVGIGIGIGIGKG 103
Score = 29.6 bits (65), Expect = 0.091
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVG 40
G GVG G G+G G G L + G+G G
Sbjct: 153 GIGVGVGIGIGIGIGKGLLQIAGVGEG 73
Score = 26.9 bits (58), Expect = 0.59
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 15 FGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGL 49
+ GCG +G G +G+G+G G G+G GL
Sbjct: 180 YAFGCGNEIGIG--------VGVGIGIGIGIGKGL 100
Score = 25.0 bits (53), Expect = 2.2
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -1
Query: 38 GVGGGCGVGVGLGWGFGSAFG 58
G G G+GVG+G G G G
Sbjct: 171 GCGNEIGIGVGVGIGIGIGIG 109
Score = 24.6 bits (52), Expect = 2.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 20 GFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
GF V + FG G G GVGVG+G G G G
Sbjct: 195 GFDVCYAFG--------CGNEIGIGVGVGIGIGIGIGKG 103
Score = 24.3 bits (51), Expect = 3.8
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 42 GCGVGVGLGWGFGSAFGSKYRSSQIRFQGV-EFDSKEKG 79
GCG +G+G G G G ++ GV E + E+G
Sbjct: 171 GCGNEIGIGVGVGIGIGIGIGKGLLQIAGVGEGEEDEEG 55
>BP044185
Length = 575
Score = 33.9 bits (76), Expect = 0.005
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 33/77 (42%)
Frame = +1
Query: 13 SGFGVGCGFGVGWG----FGGMPL-----------------------------NLLGLGV 39
+GFG+GCG G+G G G +P+ + V
Sbjct: 154 TGFGIGCGVGIGVGRPLNLGAIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEV 333
Query: 40 GGGCGVGVGLGWGFGSA 56
G GCGVG G G+G G A
Sbjct: 334 GIGCGVGFGHGFGAGLA 384
>TC7981 similar to UP|Q42487 (Q42487) Extensin like protein, complete
Length = 804
Score = 33.9 bits (76), Expect = 0.005
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = -1
Query: 31 PLNLLGLGVGGGCGVGVGLGWGFG 54
P + LGLG G G G+G+GLG+GFG
Sbjct: 249 PEDGLGLGFGFGFGLGLGLGFGFG 178
Score = 28.9 bits (63), Expect = 0.16
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 14 GFGVGCGFGVGWGFG-GMPL 32
GFG G G G+G+GFG G PL
Sbjct: 222 GFGFGLGLGLGFGFGPGHPL 163
Score = 27.3 bits (59), Expect = 0.45
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 38 GVGGGCGVGVGLGWGFGSAFG 58
G+G G G G GLG G G FG
Sbjct: 240 GLGLGFGFGFGLGLGLGFGFG 178
Score = 26.9 bits (58), Expect = 0.59
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGG 42
G G+G GFG G G G LG G G G
Sbjct: 240 GLGLGFGFGFGLGLG------LGFGFGPG 172
Score = 26.9 bits (58), Expect = 0.59
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 35 LGLGVGGGCGVGVGLGWGFG 54
LG G G G G+G+G G+G G
Sbjct: 231 LGFGFGFGLGLGLGFGFGPG 172
Score = 23.1 bits (48), Expect = 8.5
Identities = 12/39 (30%), Positives = 17/39 (42%)
Frame = -2
Query: 28 GGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQI 66
GGM +G G G +G+G W G G Y ++
Sbjct: 263 GGMNHLKMG*GWGLALALGLGWAWALGLDQGIHYYKQRL 147
>TC8884 similar to UP|O22600 (O22600) Glycine-rich protein, partial (46%)
Length = 888
Score = 33.5 bits (75), Expect = 0.006
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 14 GFGVGCGF--GVGWGFGGMPLNLLGLGVGGGCGVGVGLGWG 52
G GVG GF G+G G GG +G G GGG G+G G G G
Sbjct: 511 GAGVGGGFDNGLGGGIGGTVS--IG-GPGGGAGIGAGTGGG 624
Score = 33.1 bits (74), Expect = 0.008
Identities = 19/42 (45%), Positives = 24/42 (56%)
Frame = +1
Query: 11 FLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWG 52
F+S GVG G+G G+P +G GVGGG G+G G G
Sbjct: 442 FMSYGGVGGYSGIG--SNGLPFGTVGAGVGGGFDNGLGGGIG 561
>TC19378 weakly similar to UP|O80967 (O80967) At2g39140 protein, partial
(17%)
Length = 466
Score = 31.2 bits (69), Expect = 0.031
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 14 GFGVGCGFGVGWGFGG 29
GFG G GFG G+GFGG
Sbjct: 227 GFGFGFGFGFGFGFGG 180
Score = 30.4 bits (67), Expect = 0.054
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 38 GVGGGCGVGVGLGWGFGSAFGSKYRSSQ 65
GVGG +G G G+GFG FG + S+
Sbjct: 257 GVGGVVVIGFGFGFGFGFGFGFGFGGSE 174
Score = 28.9 bits (63), Expect = 0.16
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = -3
Query: 14 GFGVGCGFGVGWGFG 28
GFG G GFG G+GFG
Sbjct: 233 GFGFGFGFGFGFGFG 189
Score = 26.9 bits (58), Expect = 0.59
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -3
Query: 12 LSGFG----VGCGFGVGWGFGGMPLNLLGLGVGGGCG 44
L+G G +G GFG G+GFG G G GG G
Sbjct: 263 LAGVGGVVVIGFGFGFGFGFG------FGFGFGGSEG 171
Score = 25.0 bits (53), Expect = 2.2
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -1
Query: 26 GFGGMPLNLLGLGVGGGCGVGVGLGWGFG 54
G P + + G G G+G+GLG G G
Sbjct: 274 GIRSWPASAVSSLSGSGLGLGLGLGLGLG 188
Score = 25.0 bits (53), Expect = 2.2
Identities = 13/30 (43%), Positives = 15/30 (49%)
Frame = -3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGC 43
GFG G GFG G+G + L G G C
Sbjct: 221 GFGFGFGFGFGFGGSEGDVEL*GGRREGAC 132
Score = 23.1 bits (48), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 36 GLGVGGGCGVGVGL 49
GLG+G G G+G+GL
Sbjct: 226 GLGLGLGLGLGLGL 185
>AV416122
Length = 414
Score = 31.2 bits (69), Expect = 0.031
Identities = 24/76 (31%), Positives = 32/76 (41%)
Frame = -3
Query: 2 SLSHSGFCLFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKY 61
S++ + L L F G G GV FG + GGC G G GW GS +
Sbjct: 229 SVAETAGWLLLLSFESGLGSGVAASFGALV---------GGCSWGSGTGWRLEGNVGSWW 77
Query: 62 RSSQIRFQGVEFDSKE 77
S G+E ++KE
Sbjct: 76 WLSSAMNVGME-ETKE 32
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 31.2 bits (69), Expect = 0.031
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G G G G G G+GG G G GG G G G G G+G + G
Sbjct: 279 GGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGG 413
Score = 29.3 bits (64), Expect = 0.12
Identities = 20/47 (42%), Positives = 24/47 (50%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSK 60
G+G G G+G G G+GG G G GGG G G G G G G +
Sbjct: 315 GYGGG-GYG-GGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGR 449
Score = 28.1 bits (61), Expect = 0.27
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G G G G G+G GG G G GG G G G G+G +G
Sbjct: 285 GAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYG 419
>AW719349
Length = 143
Score = 30.8 bits (68), Expect = 0.041
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 18 GCGFGVGWGFGGMPLNLLGLGVGGGCGVGVG 48
GCG G G GG + G GGGCG G G
Sbjct: 9 GCGGGCGGCGGGCGSMMKSGGCGGGCGGGCG 101
Score = 24.6 bits (52), Expect = 2.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 18 GCGFGVGWGFGGMPLNLLGLGVGGG 42
GCG G G G GG + G GGG
Sbjct: 69 GCGGGCGGGCGGCGNMVESGGCGGG 143
>TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3, P1 clone:
MCB17, partial (12%)
Length = 468
Score = 30.8 bits (68), Expect = 0.041
Identities = 22/45 (48%), Positives = 26/45 (56%), Gaps = 2/45 (4%)
Frame = -1
Query: 13 SGFGVGCGFGVGWGF-GGMPLNLLGLGVGGGCGVGVG-LGWGFGS 55
+G G G G G G GG + LGLG+G G G+GV LG G GS
Sbjct: 360 AGGGGGPRSGKGKGIRGG*SVGCLGLGLGLGLGLGVVLLGLGLGS 226
Score = 28.9 bits (63), Expect = 0.16
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Frame = -3
Query: 12 LSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGV----GLGW 51
+ G +G GFG+ W FG +G G GGG VG+ +GW
Sbjct: 262 VGGSVIGFGFGIRWRFG------VGGGGGGGG*VGLPTRFAVGW 149
>AV768600
Length = 532
Score = 30.8 bits (68), Expect = 0.041
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 29 GMPLNLLGLGVGGGCGVGVGLGW 51
G+ +LG+G GG GVGVG W
Sbjct: 528 GLVFGILGVGCGGVLGVGVGFDW 460
>TC7974 similar to GB|AAA77675.1|607870|DSU11801 period protein
{Drosophila simulans;} , partial (46%)
Length = 689
Score = 30.8 bits (68), Expect = 0.041
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 13 SGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGS 59
+G G G G G G G+G G G G G+G G G+ GS
Sbjct: 24 TGTGTSTGTGTSTGTG------TGIGTGTGSTTGTGIGTGTGTTTGS 146
>TC16900 similar to UP|Q39492 (Q39492) WP6 protein precursor, partial (5%)
Length = 541
Score = 30.8 bits (68), Expect = 0.041
Identities = 18/35 (51%), Positives = 20/35 (56%)
Frame = -1
Query: 24 GWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G F +PL L L V CG+G GLG GFG FG
Sbjct: 142 GGEFDPLPLPFLCLSVCD-CGLGDGLGDGFGDDFG 41
>TC11952
Length = 557
Score = 30.8 bits (68), Expect = 0.041
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 23 VGWGFG-GMPLNLLGLGVGGGCGVGVGLGW 51
VGWGFG P G GVG G + VG GW
Sbjct: 102 VGWGFGRSEPSIACGSGVGVGF*LQVGFGW 191
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.147 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,160,056
Number of Sequences: 28460
Number of extensions: 35926
Number of successful extensions: 668
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of query: 95
length of database: 4,897,600
effective HSP length: 71
effective length of query: 24
effective length of database: 2,876,940
effective search space: 69046560
effective search space used: 69046560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0050.15