BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0050.14
(77 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {... 106 9e-25
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase... 74 4e-15
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat... 73 8e-15
CB826675 67 6e-13
TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPas... 66 1e-12
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa... 59 2e-10
AV408284 57 8e-10
BF177891 56 1e-09
TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (T... 56 1e-09
TC16655 homologue to UP|O99018 (O99018) Chloroplast protease pre... 55 2e-09
TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J... 54 7e-09
TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATP... 48 4e-07
TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%) 44 4e-06
AV421390 42 2e-05
AV422700 40 1e-04
AV411101 35 0.003
CN825067 32 0.017
BI418098 28 0.31
AV426828 28 0.31
TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Ni... 27 0.70
>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;}, partial (87%)
Length = 1385
Score = 106 bits (264), Expect = 9e-25
Identities = 51/56 (91%), Positives = 53/56 (94%)
Frame = +3
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 363 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 530
>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
RPT2a, partial (69%)
Length = 916
Score = 74.3 bits (181), Expect = 4e-15
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = +1
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I + +E+P+ HPEL+E GI PKGV+LYG PGT KTLLA+AVA+ T TF+RV G
Sbjct: 418 IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 585
>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
6B homolog, partial (65%)
Length = 901
Score = 73.2 bits (178), Expect = 8e-15
Identities = 33/59 (55%), Positives = 44/59 (73%)
Frame = +3
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSGKVY 66
I + +E+P+ H EL++ GI P+GVLLYGPPGT KT+LA+AVA+HT FIRV G +
Sbjct: 534 IREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 710
>CB826675
Length = 551
Score = 67.0 bits (162), Expect = 6e-13
Identities = 29/56 (51%), Positives = 42/56 (74%)
Frame = +1
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+++ I +P+ H E F+ G+ PKGVLLYGPPGT KTL+ARA A T+ TF++++G
Sbjct: 172 LVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 339
>TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPase subunit
RPT4a, partial (49%)
Length = 648
Score = 65.9 bits (159), Expect = 1e-12
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +2
Query: 1 LASCLSYILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTF 58
L+ + + + IE+P+ +PELF GI PKGVLLYGPPGT KTLLARA+A + D F
Sbjct: 473 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF 646
>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
Length = 1418
Score = 58.9 bits (141), Expect = 2e-10
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +2
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG-KVY 66
IL +++P+ H +LF S G+ + GVLLYGPPGT KTLLA+AVA F+ V G ++
Sbjct: 260 ILDTVQLPLLHKDLFAS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 436
Query: 67 SLYSASS 73
++Y S
Sbjct: 437 NMYIGES 457
>AV408284
Length = 425
Score = 56.6 bits (135), Expect = 8e-10
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 1 LASCLSYILQVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFI 59
L S + +++ +P+K P+LF + P KGVLLYGPPGT KT+LA+A+A + FI
Sbjct: 1 LESIKEALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 180
Query: 60 RV 61
V
Sbjct: 181NV 186
>BF177891
Length = 390
Score = 56.2 bits (134), Expect = 1e-09
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 10 QVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+++ +P++ PELF + +P KG+LL+GPPGT KTL+A+A+A FI VSG
Sbjct: 16 ELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSG 180
>TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein
(TAT-binding homolog 4), partial (20%)
Length = 389
Score = 55.8 bits (133), Expect = 1e-09
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +3
Query: 10 QVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVS 62
+++ +P+K PELF + +P KG+LL+GPPGT KT+LA+AVA FI +S
Sbjct: 18 ELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 179
>TC16655 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
partial (39%)
Length = 934
Score = 55.1 bits (131), Expect = 2e-09
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = +3
Query: 9 LQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSGKVY 66
++V+E +K PE F + G PKGVLL GPPGT KTLLA+A+A F +SG +
Sbjct: 693 MEVVEF-LKKPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 863
>TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J8.110 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 771
Score = 53.5 bits (127), Expect = 7e-09
Identities = 22/53 (41%), Positives = 38/53 (71%)
Frame = +3
Query: 10 QVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVS 62
+++ +P++ P+LF+ + +G+LL+GPPGT KT+LA A+A+ +FI VS
Sbjct: 243 ELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAXAIANEAGASFINVS 401
>TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (74%)
Length = 1060
Score = 47.8 bits (112), Expect = 4e-07
Identities = 27/63 (42%), Positives = 37/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 LASCLSYILQVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFI 59
L S + + + +P+K P+ F G +P + LLYGPPGT K+ LA+AVA D TF
Sbjct: 478 LESAKQSLQEAVILPVKFPQFFT--GKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFF 651
Query: 60 RVS 62
VS
Sbjct: 652 SVS 660
>TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)
Length = 532
Score = 44.3 bits (103), Expect = 4e-06
Identities = 21/38 (55%), Positives = 27/38 (70%), Gaps = 1/38 (2%)
Frame = +1
Query: 26 GIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVS 62
G+ P KG+LL+GPPGT KT+LA+AVA TF +S
Sbjct: 19 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 132
>AV421390
Length = 409
Score = 42.0 bits (97), Expect = 2e-05
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +2
Query: 10 QVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSGKVY 66
+V+E +++P F G PKG+LL G PGT KTLLA+A+A F +G +
Sbjct: 113 EVVEY-LRNPAKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 280
>AV422700
Length = 472
Score = 39.7 bits (91), Expect = 1e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 5 LSYILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAV 50
L + ++I P + G+ P+G+LLYGPPGT KT L RAV
Sbjct: 233 LEALRELIIFPQRFSHEARKLGLKWPRGLLLYGPPGTGKTSLVRAV 370
>AV411101
Length = 369
Score = 34.7 bits (78), Expect = 0.003
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 31 KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+ +L YGPPGT KT++AR +A + + ++G
Sbjct: 87 RNMLFYGPPGTGKTMVAREIARRSGLDYAMMTG 185
>CN825067
Length = 687
Score = 32.3 bits (72), Expect = 0.017
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 31 KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+ +L YGPPGT KT+ AR +A + + ++G
Sbjct: 193 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 291
>BI418098
Length = 478
Score = 28.1 bits (61), Expect = 0.31
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 27 IAQPK--GVLLYGPPGTRKTLLARAVAHHTDCTF 58
+ QP+ VLL GP G+ KTLLA+ +A + F
Sbjct: 145 LVQPEKSNVLLIGPTGSGKTLLAKTLARIVNVPF 246
>AV426828
Length = 401
Score = 28.1 bits (61), Expect = 0.31
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 33 VLLYGPPGTRKTLLARAVA 51
+LLYGPPGT KT AVA
Sbjct: 118 LLLYGPPGTGKTSTILAVA 174
>TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Nicotiana
tabacum;}, complete
Length = 6897
Score = 26.9 bits (58), Expect = 0.70
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 27 IAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRV 61
++ P+G+L+ G GT ++ L + +A ++ FIRV
Sbjct: 4879 LSPPRGLLVIGSIGTGRSYLVKYLAANSYVPFIRV 4983
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,487,090
Number of Sequences: 28460
Number of extensions: 15800
Number of successful extensions: 83
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of query: 77
length of database: 4,897,600
effective HSP length: 53
effective length of query: 24
effective length of database: 3,389,220
effective search space: 81341280
effective search space used: 81341280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0050.14