TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0050.12
         (143 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13547 similar to UP|Q9ZSP7 (Q9ZSP7) Cytochrome b5 DIF-F, parti...   286  1e-78
BI417677                                                              102  3e-23
TC8855 similar to UP|O48618 (O48618) Cytochome b5 (Fragment), co...    98  5e-22
TC9799 weakly similar to UP|CYB5_BRAOL (P40934) Cytochrome b5, p...    81  8e-17
TC11422 UP|NIA_LOTJA (P39869) Nitrate reductase [NADH]  (NR) , c...    71  6e-14
TC8997 similar to UP|Q84YL2 (Q84YL2) Flavohemoprotein b5/b5R-lik...    55  4e-09
TC8566 similar to UP|Q8LB96 (Q8LB96) Delta-8 sphingolipid desatu...    49  3e-07
TC16719 similar to UP|Q9ZTY9 (Q9ZTY9) Desaturase/cytochrome b5 p...    49  3e-07
BP052360                                                               26  2.3
TC16859 weakly similar to UP|Q8W3M4 (Q8W3M4) Extensin-like prote...    25  3.9
TC9497                                                                 25  3.9
TC13475                                                                25  6.7
BP057998                                                               25  6.7
TC16123 similar to UP|PGC2_HUMAN (O15173) Membrane associated pr...    24  8.7

>TC13547 similar to UP|Q9ZSP7 (Q9ZSP7) Cytochrome b5 DIF-F, partial (52%)
          Length = 584

 Score =  286 bits (731), Expect = 1e-78
 Identities = 143/143 (100%), Positives = 143/143 (100%)
 Frame = +1

Query: 1   MAERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDA 60
           MAERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDA
Sbjct: 31  MAERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDA 210

Query: 61  VGHSKEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFF 120
           VGHSKEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFF
Sbjct: 211 VGHSKEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFF 390

Query: 121 VPLVVATLYFGYRCLTRTDPVTY 143
           VPLVVATLYFGYRCLTRTDPVTY
Sbjct: 391 VPLVVATLYFGYRCLTRTDPVTY 459


>BI417677 
          Length = 526

 Score =  102 bits (254), Expect = 3e-23
 Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 4/138 (2%)
 Frame = +1

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           ++FTL++VA+H + KDCW+VI+G+V +VTKFL +HPGGDDVLL   GKD + +FD +GHS
Sbjct: 115 KLFTLAEVAEHSNVKDCWLVIHGKVYNVTKFLEDHPGGDDVLLSSTGKDASNDFDDIGHS 294

Query: 65  KEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQ----EMSAFVIKEDAESKSVALFEFF 120
             A +++ ++ VG +  +T+    V +  P   Q    + S F+I+         + +F 
Sbjct: 295 TSAVSMMDEFYVGDIDTSTIPS-SVKYTPPKQPQYNQDKTSEFIIR---------ILQFL 444

Query: 121 VPLVVATLYFGYRCLTRT 138
           VPL +  L  G R  T++
Sbjct: 445 VPLFILGLAGGIRFYTKS 498


>TC8855 similar to UP|O48618 (O48618) Cytochome b5 (Fragment), complete
          Length = 752

 Score = 98.2 bits (243), Expect = 5e-22
 Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
 Frame = +3

Query: 2   AERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAV 61
           ++ +V     V +H   KDCW++I+G+V DVT F+ +HPGGD+VLL   GKD T +F+ V
Sbjct: 102 SDPKVHLFEDVVKHSEIKDCWLIIDGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDV 281

Query: 62  GHSKEAQNLVLKYQVGILQGATVQEIDVVHKEPNSK---QEMSAFVIKEDAESKSVALFE 118
           GHS  A++++ KY +G +  +TV         P+++    + S FVIK         + +
Sbjct: 282 GHSDSARDMMEKYYIGEIDPSTVPLKRTYVPPPHTQYNPDKTSEFVIK---------ILQ 434

Query: 119 FFVPLVVATLYFGYRCLTRTD 139
           F VPL++  L F  R  T+ +
Sbjct: 435 FLVPLLILGLAFAVRHYTKKE 497


>TC9799 weakly similar to UP|CYB5_BRAOL (P40934) Cytochrome b5, partial
           (64%)
          Length = 799

 Score = 80.9 bits (198), Expect = 8e-17
 Identities = 35/73 (47%), Positives = 48/73 (64%)
 Frame = +3

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           ++ T   VA H   KDCW++ING+V DVT FL +HPGGD+ L+    KD T +F+ VGHS
Sbjct: 84  KLLTFEDVALHNHKKDCWIIINGKVYDVTPFLDDHPGGDEALITATEKDATIDFEDVGHS 263

Query: 65  KEAQNLVLKYQVG 77
             A  ++ +Y VG
Sbjct: 264 DSAIEMMEQYFVG 302


>TC11422 UP|NIA_LOTJA (P39869) Nitrate reductase [NADH]  (NR) , complete
          Length = 2932

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = +1

Query: 5    RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
            ++++LS+V +H S    W++++G V D T+FL +HPGG D +L  AG D T+EF+A+ HS
Sbjct: 1564 KMYSLSEVKKHNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAI-HS 1740

Query: 65   KEAQNLVLKYQVGIL 79
             +A+ ++  Y+VG L
Sbjct: 1741 DKAKKMLEDYRVGEL 1785


>TC8997 similar to UP|Q84YL2 (Q84YL2) Flavohemoprotein b5/b5R-like, partial
           (41%)
          Length = 635

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 28/89 (31%), Positives = 49/89 (54%)
 Frame = +1

Query: 2   AERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAV 61
           + RR+ +   V +H++    W V+ GRV +++ ++  HPGG D+L++  GKD T  F+  
Sbjct: 31  SNRRLISKDDVKKHQTEGHMWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKY 210

Query: 62  GHSKEAQNLVLKYQVGILQGATVQEIDVV 90
                A+ L+ K  VGIL     ++I  +
Sbjct: 211 HAWVNAEFLLEKCLVGILDEGQ*RKISFI 297


>TC8566 similar to UP|Q8LB96 (Q8LB96) Delta-8 sphingolipid desaturase,
           partial (63%)
          Length = 1081

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 25/74 (33%), Positives = 41/74 (54%)
 Frame = +2

Query: 4   RRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGH 63
           +R  +  ++ +H    D W+ I G+V +V+ +  +HPGG+  LL +AG+DVT  F A  H
Sbjct: 233 KRYISSEELKEHNKQGDLWISIQGKVYNVSDWAKDHPGGEVPLLNLAGQDVTDAFIAY-H 409

Query: 64  SKEAQNLVLKYQVG 77
              A   + K+  G
Sbjct: 410 PGSAWQYLDKFFTG 451


>TC16719 similar to UP|Q9ZTY9 (Q9ZTY9) Desaturase/cytochrome b5 protein,
           partial (20%)
          Length = 452

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 25/74 (33%), Positives = 41/74 (54%)
 Frame = +1

Query: 4   RRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGH 63
           +R  +  ++ +H    D W+ I G+V +V+ +  +HPGG+  LL +AG+DVT  F A  H
Sbjct: 178 KRYISSEELKEHNKQGDLWISIQGKVYNVSDWAKDHPGGEVPLLNLAGQDVTDAFIAY-H 354

Query: 64  SKEAQNLVLKYQVG 77
              A   + K+  G
Sbjct: 355 PGSAWQYLDKFFTG 396


>BP052360 
          Length = 519

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 10  SQVAQHKSNKDCWVVING 27
           S+    K NK CWV++NG
Sbjct: 140 SKKKHEKENKGCWVLLNG 87


>TC16859 weakly similar to UP|Q8W3M4 (Q8W3M4) Extensin-like protein, partial
           (13%)
          Length = 745

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 7   FTLSQVAQHKSNKDCWVVINGRVLDVTK 34
           F+LS     +   +CW +I  +VLDV+K
Sbjct: 89  FSLSDNYFTEVGPECWKLIKSKVLDVSK 172


>TC9497 
          Length = 859

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 112 KSVALFEFFVPLVVATLYFGY 132
           K + LF+FFVPLV   L + +
Sbjct: 711 KVICLFKFFVPLVTFPLIYAF 773


>TC13475 
          Length = 505

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 92  KEPNSKQEMSAFVIKEDAESKSVALFEFFVPLVVATLYFG 131
           +EP SK + +A ++ +D   KSV     F  L+V  L  G
Sbjct: 236 QEPKSKFDPAAVMLLQDFPLKSVGFHPTFQMLMVLLLLAG 117


>BP057998 
          Length = 566

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 20/85 (23%), Positives = 36/85 (41%)
 Frame = +2

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           + F LSQ+    SN+DCW V           L    G + + LE  G ++ K+   +  +
Sbjct: 125 QTFNLSQL----SNEDCWSVFANHAC-----LFPGLGENTIALEKIGLEIVKKCKGLPLA 277

Query: 65  KEAQNLVLKYQVGILQGATVQEIDV 89
            ++   +L+ +  I     V   D+
Sbjct: 278 AQSLGGLLRRKHNIKDWNNVLNCDI 352


>TC16123 similar to UP|PGC2_HUMAN (O15173) Membrane associated progesterone
           receptor component 2 (Progesterone membrane binding
           protein) (Steroid receptor protein DG6), partial (15%)
          Length = 604

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
 Frame = +1

Query: 9   LSQVAQHKSNKDCWVVINGRVLDVTKFLIEH-PGGDDVLLEVAGKDVTKEFDAVGHSKE 66
           LSQ      +K  +V + GRV DVT     + PGG   +   AG+D ++    +  ++E
Sbjct: 109 LSQYNGTDPSKPIYVSVKGRVFDVTTGKSFYGPGGAYAMF--AGRDASRALAKMSKNEE 279


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,908,574
Number of Sequences: 28460
Number of extensions: 17789
Number of successful extensions: 111
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of query: 143
length of database: 4,897,600
effective HSP length: 82
effective length of query: 61
effective length of database: 2,563,880
effective search space: 156396680
effective search space used: 156396680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)