BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.9
(1366 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 183 1e-46
BP053577 141 6e-34
CB826728 104 7e-32
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 122 3e-28
AV780705 115 4e-26
AV767121 105 5e-23
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 101 7e-22
BP080049 95 9e-20
AU251850 92 4e-19
AV426428 88 1e-17
AV411435 86 3e-17
CB827358 68 6e-17
BP075797 85 7e-17
BP060613 83 3e-16
AV780221 81 1e-15
AV779667 79 4e-15
CN825238 78 8e-15
TC10764 76 4e-14
TC17368 48 6e-14
BP032481 61 1e-11
>TC18710
Length = 843
Score = 183 bits (465), Expect = 1e-46
Identities = 99/227 (43%), Positives = 131/227 (57%)
Frame = +2
Query: 451 FQMHPTKAPGLDGFPALFYQKFWPIVGDDISEFCLQVLQGDISPGMVNQTLIVLIPKVKK 510
F + ++ G+DG LFYQK +V D ++ L L+ P +N+TL+ LIPKV
Sbjct: 161 FLLETSQPRGMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPH 340
Query: 511 AVFANQYRPISLCNVIFKIISKTIANRMKLILHDLISEAQSAFVPGRLITDNALIAFECF 570
NQ+RPIS C ++K+ISK R+K + DLIS QS F+ GR I DN LI E F
Sbjct: 341 PESINQFRPISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAF 520
Query: 571 HYMKKRISGRSGMMALKLDMSKAYDRVEWPFLRSVLTHMGFPVHWVNLVMNCVTTVNFAV 630
H + + + +KLDM+KAYDRVEW FL S L GF +WV ++M V+ V++
Sbjct: 521 HAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNY 700
Query: 631 MLNGNPQPTFAPHRGLRQGDPLSPYLFILCGEAFSALIQKSISTSAL 677
+NG P P RGLRQGDP SPYLF+ E S LIQ S + L
Sbjct: 701 KINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMGNL 841
>BP053577
Length = 463
Score = 141 bits (356), Expect = 6e-34
Identities = 71/135 (52%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +3
Query: 1233 AGFGLVARDHAGEVLAAAAKYPIMVLSPTVAEALSLRWAMDLAIQLGFRRVQFETDCLLL 1292
AG G+VAR+ GEV+A+A P+ + SP +AEAL LRW M LA LGFRR+ ETDCL L
Sbjct: 12 AGLGMVARNCDGEVMASACSSPVSISSPLLAEALGLRWTMQLATDLGFRRITLETDCLQL 191
Query: 1293 QQAWK-KVSGNSYLFSIIKDCHKLVVFFDHVDLTFVRREGNSCADYLARNASSYPDSVWI 1351
W+ + G SYL SII DC L+ FD+V ++FVRR GN+ AD+LARN+ +Y + VW+
Sbjct: 192 FNTWRSQEEGRSYLSSIISDCRILISAFDYVSVSFVRRTGNTVADFLARNSDTYANMVWV 371
Query: 1352 EEGPPGLSSLLRDDV 1366
EE P + SL+ DV
Sbjct: 372 EEVPLTVVSLIDADV 416
>CB826728
Length = 509
Score = 104 bits (259), Expect(2) = 7e-32
Identities = 48/99 (48%), Positives = 64/99 (64%)
Frame = +1
Query: 1017 FWLGTADGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPRVREVSWRV 1076
FW G++DG YS K+GYEF++ PS+S + + +WK W A S+PR +EV WR
Sbjct: 211 FWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMWRA 390
Query: 1077 CTGALPVRTKLRQRGVDVDSSCPLCGLEDETVDHLFLGC 1115
C G LPVR+ L++RG+DVD S P GLEDE H+ L C
Sbjct: 391 CAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507
Score = 51.6 bits (122), Expect(2) = 7e-32
Identities = 28/71 (39%), Positives = 40/71 (55%)
Frame = +3
Query: 947 IWEDNWLANGPPVNFRQDVVDELGLTKVADLMLSGNRGWNVPLIEWTFCPATASRIMSVP 1006
I D WL N P+ + +D+ +L L KVADL+ +G WN L+ F P+T + ++V
Sbjct: 6 ILHDAWLPNSAPLVYCEDLFVDLQLKKVADLIENGR--WNENLVSMVFSPSTTAVFLAVS 179
Query: 1007 LPRQPESDQLF 1017
LP Q D LF
Sbjct: 180 LPLQSYEDCLF 212
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 122 bits (307), Expect = 3e-28
Identities = 70/190 (36%), Positives = 104/190 (53%)
Frame = -3
Query: 358 LKHGDRNTKFFHSKATQRRKRNLIEEIQDDNGRKFVRDADIARVLTSYFQEIFSTCNPTG 417
LK GD NT+FFH+ QRR N I +I+D +G + +YF +I+S+
Sbjct: 578 LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQY 399
Query: 418 IEEVATLVDGRVTDAHRRILSTPFTREDVEEALFQMHPTKAPGLDGFPALFYQKFWPIVG 477
+ E + VTD L + ++++EA+F M KAPG+DG LFYQ+ IV
Sbjct: 398 LRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVK 219
Query: 478 DDISEFCLQVLQGDISPGMVNQTLIVLIPKVKKAVFANQYRPISLCNVIFKIISKTIANR 537
+D++ L P +N+TL+ LIPK+ A Q+RPIS C+ I+K+ISK I R
Sbjct: 218 NDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVAR 39
Query: 538 MKLILHDLIS 547
+K + +LIS
Sbjct: 38 LKPDMVNLIS 9
>AV780705
Length = 524
Score = 115 bits (289), Expect = 4e-26
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Frame = -2
Query: 751 LLGVKAVDSYDKYLGLPTIIGKSKTQIFRFVKERVWKKLKGWKEQTLSRAGREVLIKSVA 810
LL + D YLGLP I G++K+ +++E+V +KL+GWKE L++AG+EVLIK++
Sbjct: 520 LLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAII 341
Query: 811 QAIPSYVMSCFVLPDGLCNEIESMISRFYW--GGDASKRGIHWVKWKTMCQPKHVGGLGF 868
QAIPSY M+ P CN + ++++ F+W G+ + V K K GG+GF
Sbjct: 340 QAIPSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLS-KEKGGVGF 164
Query: 869 RDFKSFNLALVAKNWWRIYNYPDSLLGKVFKSVYF 903
RD ++ NLA +A+ WR+ P++L +V KS+YF
Sbjct: 163 RDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYF 59
>AV767121
Length = 525
Score = 105 bits (262), Expect = 5e-23
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = +2
Query: 789 LKGWKEQTLSRAGREVLIKSVAQAIPSYVMSCFVLPDGLCNEIESMISRFYWGGDASKRG 848
L WK++T+S GR LI+SV A+P + +S F LP G+ ++ F WGG ++
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 849 IHWVKWKTMCQPKHVGGLGFRDFKSFNLALVAKNWWRIYNYPDSLLGKVFKSV--YFSSG 906
I VKW +C+PK +GGLG +D +FN AL+ K WR PDSL +V ++ ++S G
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYSCG 361
Query: 907 RMECAKKGYRPSYAWSRILK-----TSAMIQKGSCWRIGEGSRVRIWEDNWLANG 956
S W+ IL G +GEG + + W ++WL +G
Sbjct: 362 -----------SSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSG 493
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 101 bits (252), Expect = 7e-22
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 7/167 (4%)
Frame = -3
Query: 266 ECAEIISEGWSNTNLSILSRI-NLVGRS------LDSWGREKYGELPKRIKEARAFLQRL 318
EC E I + W NT+ + S NL G++ L W + + K I E + L+ L
Sbjct: 528 ECKETIKKAWDNTSETASSHCSNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEHL 349
Query: 319 QEEVQTEQVVRATREAEKNLDVLLKQEEIVWSQRSRANWLKHGDRNTKFFHSKATQRRKR 378
Q + + + ++ + L L +QEE+ WSQRSR WLK GD+NTKFFH+ QRR+R
Sbjct: 348 QNYSNSGEDWQEIKQRKMRLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRER 169
Query: 379 NLIEEIQDDNGRKFVRDADIARVLTSYFQEIFSTCNPTGIEEVATLV 425
N IE I+D G I R + ++ +I+ + N I E V
Sbjct: 168 NRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITECLNAV 28
>BP080049
Length = 356
Score = 94.7 bits (234), Expect = 9e-20
Identities = 49/101 (48%), Positives = 64/101 (62%)
Frame = -1
Query: 1266 LSLRWAMDLAIQLGFRRVQFETDCLLLQQAWKKVSGNSYLFSIIKDCHKLVVFFDHVDLT 1325
LSLRWA+ LA +LGFR + FETDCL L +AWK+ G S L ++I DC L+ +FD L+
Sbjct: 356 LSLRWALGLASELGFR*IVFETDCLHLYEAWKRRGGCSVLDTLILDCRNLLSYFDVFQLS 177
Query: 1326 FVRREGNSCADYLARNASSYPDSVWIEEGPPGLSSLLRDDV 1366
FVRR N D LA+ + VW+EE P L L++ DV
Sbjct: 176 FVRRTSNCVVDALAKLCFQLGNVVWVEELPHELYGLVQSDV 54
>AU251850
Length = 343
Score = 92.4 bits (228), Expect = 4e-19
Identities = 47/103 (45%), Positives = 66/103 (63%), Gaps = 3/103 (2%)
Frame = +2
Query: 3 PTSMRLLSWNCRGLGNLEAVRALRGLIHSQAPDIVFLMETKLFSFEMQRHRGMGGLSNIF 62
PT+M+LLSWNCRGLG+ AV AL+ L+ + P +VFLMETKL FE ++ GLSN
Sbjct: 29 PTAMKLLSWNCRGLGSPRAVEALQRLVRKEIPQLVFLMETKLKKFETEKISLGFGLSNCL 208
Query: 63 PVQC---GRNRAGGLCLLWRSEVEVTIINASLHHILFTVVHSD 102
V C + R GGL + W + V+V++++ S +HI+ V D
Sbjct: 209 IVDCVGDEKERKGGLAMWWNASVDVSLVSFSGNHIVVACVEDD 337
>AV426428
Length = 413
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/128 (35%), Positives = 64/128 (49%)
Frame = +3
Query: 1045 SSSLSRGLDQTLWKRFWKAPSMPRVREVSWRVCTGALPVRTKLRQRGVDVDSSCPLCGLE 1104
SSS L ++ WKA ++PR E WR C G LPV+ L RG+ D CP C
Sbjct: 9 SSSQVPSLPSVD*RKLWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCLAA 188
Query: 1105 DETVDHLFLGCNITRGCWFASPMGVRVDPSLKMVDFLTMVIRDMDLEVVACVQRFLFAIW 1164
+T DH L C WFAS +G R++ KM +F+ ++ D + L+AIW
Sbjct: 189 PKTADHAVLFCP*VHPIWFASSLGFRLNQECKMHEFVADFMQVAD*DTCGEFLTILYAIW 368
Query: 1165 EARNKHIF 1172
A+N+ F
Sbjct: 369 TAQNELCF 392
>AV411435
Length = 426
Score = 86.3 bits (212), Expect = 3e-17
Identities = 43/126 (34%), Positives = 58/126 (45%)
Frame = +3
Query: 1002 IMSVPLPRQPESDQLFWLGTADGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFW 1061
IM P D+LFW G YSVK+GY ++ S +S S LW W
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIW 182
Query: 1062 KAPSMPRVREVSWRVCTGALPVRTKLRQRGVDVDSSCPLCGLEDETVDHLFLGCNITRGC 1121
A +VR WR A+PV+ L++R + D CP+C E ++H L C TR
Sbjct: 183 GAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362
Query: 1122 WFASPM 1127
WF P+
Sbjct: 363 WFGCPL 380
>CB827358
Length = 453
Score = 68.2 bits (165), Expect(2) = 6e-17
Identities = 42/110 (38%), Positives = 58/110 (52%)
Frame = +2
Query: 1140 FLTMVIRDMDLEVVACVQRFLFAIWEARNKHIFEEKLFCIAGVLDRAASLVSQSTLPFTL 1199
FL + + D +VVA Q A+WEA NK IF+E F + RA S+ SQ +
Sbjct: 125 FLLQFLVEADSDVVASCQMASCALWEAHNKLIFQEVPFRCEAAIQRATSM-SQVDVSTVD 301
Query: 1200 AASQEKDNLKRWRRPAENVVKVNVDAAVGQDRFAGFGLVARDHAGEVLAA 1249
++ + WRRP V KVN D + D +G G+VAR+H G +LAA
Sbjct: 302 PSANGPVHDAIWRRPPRGVFKVNFDGSWKSDSVSGIGMVARNHDGLILAA 451
Score = 37.4 bits (85), Expect(2) = 6e-17
Identities = 18/44 (40%), Positives = 28/44 (62%)
Frame = +3
Query: 1065 SMPRVREVSWRVCTGALPVRTKLRQRGVDVDSSCPLCGLEDETV 1108
++PR ++++W VC R L ++GV+ D SCPLCG E T+
Sbjct: 9 ALPRCKDLAWCVCC-----R*SLWRKGVNSDPSCPLCGNEF*TI 125
>BP075797
Length = 504
Score = 85.1 bits (209), Expect = 7e-17
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = -2
Query: 1241 DHAGEVLAAAAKYPIMVLSPTVAEALSLRWAMDLAIQLGFRRVQFETDCLLLQQAW-KKV 1299
+H G+ + A++ + ++ P +AEALSLR + L FR ++ E+DCL L AW + V
Sbjct: 464 NHEGKAIIASSFHLLVAYEPAIAEALSLRRTITLPQDENFRIIELESDCLQLVHAWDRSV 285
Query: 1300 SGNSYLFSIIKDCHKLVVFFDHVDLTFVRREGNSCADYLARNASSYPDSVWIEEGPPGLS 1359
YL SI++DC L F D L R+ N AD+LA+ A Y D W+ PP S
Sbjct: 284 PHPHYLASIVQDCKDLSSFSDSCSLKHSSRKINEVADHLAKLAFVYQDHFWVGIDPPATS 105
Query: 1360 SLLRDD 1365
LL+ D
Sbjct: 104 LLLQPD 87
>BP060613
Length = 378
Score = 82.8 bits (203), Expect = 3e-16
Identities = 39/107 (36%), Positives = 58/107 (53%)
Frame = +1
Query: 840 WGGDASKRGIHWVKWKTMCQPKHVGGLGFRDFKSFNLALVAKNWWRIYNYPDSLLGKVFK 899
W RG+HW KW + + K GGLGF+DF+ N AL+AK WRI + PD+L ++ K
Sbjct: 46 WWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK 225
Query: 900 SVYFSSGRMECAKKGYRPSYAWSRILKTSAMIQKGSCWRIGEGSRVR 946
++YF K S+ WS +L ++ K W++G G V+
Sbjct: 226 ALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETVQ 366
>AV780221
Length = 461
Score = 81.3 bits (199), Expect = 1e-15
Identities = 49/150 (32%), Positives = 75/150 (49%), Gaps = 1/150 (0%)
Frame = +3
Query: 805 LIKSVAQAIPSYVMSCFVLPDG-LCNEIESMISRFYWGGDASKRGIHWVKWKTMCQPKHV 863
LI+SV A+P + + F LP G + + F+ + I WVKW T+C+PK
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188
Query: 864 GGLGFRDFKSFNLALVAKNWWRIYNYPDSLLGKVFKSVYFSSGRMECAKKGYRPSYAWSR 923
GGLG ++ FN AL+ K WR+ D L KV + + + + A + ++
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVL-LIKYKNAIPQSASSWWNDLHSTCF 365
Query: 924 ILKTSAMIQKGSCWRIGEGSRVRIWEDNWL 953
+Q+G C RIGEG+ V+ W +NWL
Sbjct: 366 EDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>AV779667
Length = 455
Score = 79.3 bits (194), Expect = 4e-15
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = -3
Query: 1329 REGNSCADYLARNASSYPDSVWIEEGPPGLSSLLRDDV 1366
REGNSCADYLARNASSYPDSVWI EGPPGLSSLLRDDV
Sbjct: 159 REGNSCADYLARNASSYPDSVWI*EGPPGLSSLLRDDV 46
>CN825238
Length = 692
Score = 78.2 bits (191), Expect = 8e-15
Identities = 42/138 (30%), Positives = 72/138 (51%), Gaps = 1/138 (0%)
Frame = +3
Query: 975 ADLMLSGNRGWNVPLIEWTFCPATASRIMSVPLPRQPESDQLFWLGTADGLYSVKTGYEF 1034
A L++ R WNV LI+ F TA+ I S+PL + + W + +G +SV++ Y
Sbjct: 291 AILLIPNARRWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYN 470
Query: 1035 LQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPRVREVSWRVCTGALPVRTKLRQRGVDV 1094
+Q + SS+ S WK+ W+ P +++ ++RV +P R L++RG+ V
Sbjct: 471 IQVAKEMQTSSSAAS----SFPWKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAV 638
Query: 1095 DSSCPLCGLE-DETVDHL 1111
+ CP C + E++ HL
Sbjct: 639 QNECPTCNHQIPESMSHL 692
>TC10764
Length = 555
Score = 75.9 bits (185), Expect = 4e-14
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Frame = +1
Query: 1224 DAAVGQDRFAGFGLVARDHAGEVLAAAAKYPIMVLSPTVAEALSLRWAMDLAIQLGFRRV 1283
D +V + GFGL+A DH GEVLAA + +P+ VL P +AEA WA+ + F
Sbjct: 79 DVSVVEHLDVGFGLLAGDHEGEVLAATSAFPLSVLPPLIAEAFC--WALSSDMTSCFGSF 252
Query: 1284 QFETDCLLLQQAWKKV-SGNSYLFSIIKDCHKLVVFFDHVDLTFVRREGNS 1333
FE L L + W K G+SY+ +++ DC L +FD ++ +FV +S
Sbjct: 253 CFEIGYLQLYETWMKT*PGSSYVCTLVNDCRLLACYFDFIEPSFVCTSSHS 405
>TC17368
Length = 563
Score = 48.1 bits (113), Expect(2) = 6e-14
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 1269 RWAMDLAIQLGFRRVQFETDCLLLQQAW-KKVSGNSYLFSIIKDCHKLVVFFDHVDLTFV 1327
RWA++L + LGF V FE DC +L AW K++ YL I++D L F+ +V
Sbjct: 231 RWAIELTMDLGFSGVIFENDC*VLHCAWISKLNSPPYLSFIVQDYWFLSFGFNSCSFVYV 410
Query: 1328 RREGNSCA 1335
+R+ N+ A
Sbjct: 411 KRQCNAVA 434
Score = 47.4 bits (111), Expect(2) = 6e-14
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 1211 WRRPAENVVKVNVDAAVGQDRFAGFGLVARDHAGEVLAAAAKYPIMVLSPTVAEA 1265
W+ PA+ + VN A+ AGFGL+AR+ +G+VLA A + V SP VA+A
Sbjct: 55 WKPPAQGSINVNFGASFKAGVGAGFGLIARNGSGQVLAIATNLIVDVSSPVVAQA 219
>BP032481
Length = 447
Score = 60.8 bits (146), Expect(2) = 1e-11
Identities = 33/65 (50%), Positives = 42/65 (63%), Gaps = 1/65 (1%)
Frame = -1
Query: 1292 LQQAWK-KVSGNSYLFSIIKDCHKLVVFFDHVDLTFVRREGNSCADYLARNASSYPDSVW 1350
L ++WK K SYL SI++DC L FD V L+FVRR GN+ A + ARNA +Y + VW
Sbjct: 258 LFKSWKAKEVE*SYLSSILQDCRLLFTAFDVVSLSFVRRTGNTVAGFFARNAETYANLVW 79
Query: 1351 IEEGP 1355
EE P
Sbjct: 78 PEEVP 64
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/61 (42%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Frame = -2
Query: 1260 PTVAEALSLRWAMDLAIQLGFRRVQFETDCLLLQQAWKKVSGNSYL---FSIIKDCHKLV 1316
P +AEA+S+RW M LAI LGFRR+ ETDCL K + ++ F I C+ L+
Sbjct: 353 PLLAEAMSMRWIMQLAIDLGFRRICLETDCLTFSSLGKXRRSSDHI*APFFRIVVCYLLL 174
Query: 1317 V 1317
+
Sbjct: 173 L 171
Score = 26.9 bits (58), Expect(2) = 1e-11
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -3
Query: 1234 GFGLVARDHAGEVLAAAAKYPI 1255
G G+VAR+ G+V+A +PI
Sbjct: 430 GMGMVARNSEGDVMATTCSFPI 365
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,481,631
Number of Sequences: 28460
Number of extensions: 391520
Number of successful extensions: 1926
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of query: 1366
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1265
effective length of database: 2,023,140
effective search space: 2559272100
effective search space used: 2559272100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0048.9