TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0048.6
         (1124 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8897 similar to UP|PHYA_PEA (P15001) Phytochrome A, partial (30%)   599  e-175
TC13239 homologue to UP|PHYB_SOYBN (P42499) Phytochrome B, parti...   201  7e-52
AV769574                                                              167  2e-47
AV410786                                                              175  3e-44
AU088958                                                              169  2e-42
AV427846                                                               83  3e-16
BP055499                                                               60  3e-09
BP063585                                                               49  6e-06
AV780756                                                               35  0.051
BP047893                                                               28  8.1

>TC8897 similar to UP|PHYA_PEA (P15001) Phytochrome A, partial (30%)
          Length = 1250

 Score =  599 bits (1544), Expect(2) = e-175
 Identities = 313/316 (99%), Positives = 314/316 (99%)
 Frame = +2

Query: 792  VMDKMLLGEVFGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECL 851
            VMDKMLLGEVFGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECL
Sbjct: 2    VMDKMLLGEVFGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECL 181

Query: 852  LSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLS 911
            LSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQ LSEQTALKRLKALTYMKRQIRNPLS
Sbjct: 182  LSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKRQIRNPLS 361

Query: 912  GIVFSRKTLEGTDLGIEQKRLVHTSAQCQRQLSKILDDSDLDSIMDGYLDLEMAEFTLQD 971
            GIVFSRKTLEGTDLGIEQKRLVHTSAQCQRQLSKILDDSDLDSIMDGYLDLEMAEFTLQD
Sbjct: 362  GIVFSRKTLEGTDLGIEQKRLVHTSAQCQRQLSKILDDSDLDSIMDGYLDLEMAEFTLQD 541

Query: 972  VLITSLSQIMARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPNGGQ 1031
            VLITSLSQIMARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPNGGQ
Sbjct: 542  VLITSLSQIMARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPNGGQ 721

Query: 1032 VVVAASLTKEQLGKSVHLANLELSITHGGSGVPEALLNQMFGNDGLESEEGISLLISRKL 1091
            VVVAASLTKEQLGKSVHLANLELSITHGGSGVPEALLNQMFG DGLESEEGISLLISRKL
Sbjct: 722  VVVAASLTKEQLGKSVHLANLELSITHGGSGVPEALLNQMFGYDGLESEEGISLLISRKL 901

Query: 1092 LKLMSGDVRYLREAGK 1107
            LKLMSGDVRYLREAG+
Sbjct: 902  LKLMSGDVRYLREAGQ 949



 Score = 36.2 bits (82), Expect(2) = e-175
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +3

Query: 1107 KSSFILSVELAAAHKLKA 1124
            KSSFILSVELAAAHKLKA
Sbjct: 948  KSSFILSVELAAAHKLKA 1001


>TC13239 homologue to UP|PHYB_SOYBN (P42499) Phytochrome B, partial (12%)
          Length = 441

 Score =  201 bits (510), Expect = 7e-52
 Identities = 98/147 (66%), Positives = 115/147 (77%)
 Frame = +3

Query: 303 DEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDNDEDGDGSDSVQPQKRK 362
           DE L   L L GSTLRAPH CH QYMANM SIASLVMAV++N ND+D  G   V  +   
Sbjct: 6   DEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDDAVG---VGGRSSM 176

Query: 363 RLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDM 422
           RLWGLVVCH+TS R +PFPLRYACEFL Q F + +N E+++  Q LEK +LRTQTLLCDM
Sbjct: 177 RLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQMAAQSLEKRVLRTQTLLCDM 356

Query: 423 LMRDAPLGILTQSPNLMDLVKCDGAAL 449
           L+RD+P GI+TQSP++MDLVKCDGAAL
Sbjct: 357 LLRDSPAGIVTQSPSIMDLVKCDGAAL 437


>AV769574 
          Length = 540

 Score =  167 bits (424), Expect(2) = 2e-47
 Identities = 85/89 (95%), Positives = 85/89 (95%)
 Frame = +1

Query: 1   MSSSRPSQSSNNSGRSRHSARVIAQTTVDAKIHANFEESGSSFDYSSSVRASGTADADHQ 60
           MSSSRPSQSSNNSGRSRHSARVIAQTTVDAKIHANFEESGSSFDYSSSVRASGTADADHQ
Sbjct: 241 MSSSRPSQSSNNSGRSRHSARVIAQTTVDAKIHANFEESGSSFDYSSSVRASGTADADHQ 420

Query: 61  PKSNKVTTAYLHHIQRGKLIQPFGCLLAL 89
           PKSNKVTTAYLHHIQRGKLIQPF  L  L
Sbjct: 421 PKSNKVTTAYLHHIQRGKLIQPFWLLAGL 507



 Score = 39.7 bits (91), Expect(2) = 2e-47
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +2

Query: 83  FGCLLALDEKTCKVIAY 99
           FGCLLALDEKTCKVIAY
Sbjct: 488 FGCLLALDEKTCKVIAY 538


>AV410786 
          Length = 255

 Score =  175 bits (444), Expect = 3e-44
 Identities = 84/84 (100%), Positives = 84/84 (100%)
 Frame = +2

Query: 224 DTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFM 283
           DTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFM
Sbjct: 2   DTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFM 181

Query: 284 KNKVRMIVDCHAKQVKVLIDEKLP 307
           KNKVRMIVDCHAKQVKVLIDEKLP
Sbjct: 182 KNKVRMIVDCHAKQVKVLIDEKLP 253


>AU088958 
          Length = 606

 Score =  169 bits (428), Expect = 2e-42
 Identities = 81/150 (54%), Positives = 104/150 (69%)
 Frame = +3

Query: 713 NACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFG 772
           NAC SRD    +VGVCFV QDIT +K V+DKF ++EGDYKAI+Q+ NPLIPPIF +DE  
Sbjct: 6   NACTSRDYTNAIVGVCFVGQDITHEKVVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENA 185

Query: 773 WCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTHMAACRLKNQEAFVNFGIVLNKAMTGSE 832
            C EWN AM KLTGWKREEV+ K+L GE+FG     C+LK Q+   NF I+L   ++G +
Sbjct: 186 CCSEWNAAMEKLTGWKREEVIGKLLPGEIFGNF---CQLKGQDTLTNFMILLYXGLSGQD 356

Query: 833 TEKVGFGFFARSGKYVECLLSVSKKLDVEG 862
           + K+ FGFF  +GK+V   ++ S K    G
Sbjct: 357 SXKLPFGFFDXNGKFVXVYITASXKNXAAG 446



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 16/52 (30%), Positives = 25/52 (47%)
 Frame = +3

Query: 613 ELEAVTSEMVRLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGEAIGKHL 664
           +LE     +++ +     PI A D +   + WN  + +LTG    E IGK L
Sbjct: 105 KLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKREEVIGKLL 260


>AV427846 
          Length = 403

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 1004 LYGDSLRLQQVLADFLLISINCTPN-GGQVVVAASLTKEQLGKSVHLANLELSITHGGSG 1062
            +YGD LR+QQVLADFL   +   P+  G V +      +Q+   + L + E  +   G G
Sbjct: 16   VYGDQLRIQQVLADFLSNVVRYAPSPDGWVEIHVYPKIKQISDGLTLLHAEFRLVCPGEG 195

Query: 1063 VPEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGKSSFILSVELAAAHK 1121
            +P  L+  MF N    ++EG+ L +SRK+LKLM+G+V+Y+REA +  F + +EL    +
Sbjct: 196  LPSELVQDMFHNSRWVTQEGLGLCMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRR 372


>BP055499 
          Length = 534

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 28/67 (41%), Positives = 46/67 (67%), Gaps = 1/67 (1%)
 Frame = -3

Query: 1051 NLELSITHGGSGVPEALLNQMF-GNDGLESEEGISLLISRKLLKLMSGDVRYLREAGKSS 1109
            +L+  +TH G G+P A+L+ MF G +   ++EG+ L +SRK+L  M+G V+Y+RE  K  
Sbjct: 481  HLKFRMTHSGQGLPSAVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVQYVREQNKCY 302

Query: 1110 FILSVEL 1116
            F++ +EL
Sbjct: 301  FLIDLEL 281


>BP063585 
          Length = 382

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 33/48 (68%), Positives = 35/48 (72%), Gaps = 4/48 (8%)
 Frame = -3

Query: 1081 EGISLLISRKLLKLMSGDVRYLREAGKSSFIL----SVELAAAHKLKA 1124
            EGIS LI RKLLKLMSGDV   R+A  S  I+    SVELAAAHKLKA
Sbjct: 380  EGISRLIRRKLLKLMSGDV---RDAKGSRPIMR*S*SVELAAAHKLKA 246


>AV780756 
          Length = 511

 Score = 35.4 bits (80), Expect = 0.051
 Identities = 18/37 (48%), Positives = 26/37 (69%), Gaps = 1/37 (2%)
 Frame = -3

Query: 1082 GISLLISRKLLKLMSGDVRYL-REAGKSSFILSVELA 1117
            G+ L +SRK+LKLM+G+V+Y  RE    SF++   LA
Sbjct: 509  GLGLCMSRKILKLMNGEVQYR*RERNAYSFVIQKRLA 399


>BP047893 
          Length = 514

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 19/64 (29%), Positives = 27/64 (41%), Gaps = 5/64 (7%)
 Frame = +2

Query: 320 PHSCHLQYMANMDSIASLVMAVVVND-----NDEDGDGSDSVQPQKRKRLWGLVVCHNTS 374
           P SCH+  +   DSI + V AVV +      ND  G    +   +   R W   +  N S
Sbjct: 71  PSSCHIIMLRIFDSILARVKAVVTSPSSFHLNDPVGKKGGTNAKEATNRQWSAYMAVNCS 250

Query: 375 PRFV 378
             +V
Sbjct: 251 KPWV 262


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,404,080
Number of Sequences: 28460
Number of extensions: 220736
Number of successful extensions: 1099
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of query: 1124
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1024
effective length of database: 2,051,600
effective search space: 2100838400
effective search space used: 2100838400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)