TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0048.5
         (117 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065897                                                               29  0.24
TC14616                                                                28  0.31
TC9190 similar to UP|Q9FQD3 (Q9FQD3) Glutathione S-transferase G...    27  0.69
BP032642                                                               27  0.69
TC17052 similar to PIR|E86320|E86320 F6A14.21 protein - Arabidop...    27  1.2
AV777511                                                               25  3.4
TC9962 similar to UP|Q8L7Z6 (Q8L7Z6) AT3g54680/T5N23_40, partial...    25  3.4
AV766655                                                               25  3.4
BP040784                                                               25  3.4
TC15862 homologue to UP|O22339 (O22339) Aquaporin-like transmemb...    25  4.4
BI418710                                                               25  4.4
TC18472                                                                25  4.4
TC11875 similar to UP|Q94BV0 (Q94BV0) At1g79600/F20B17_3, partia...    25  4.4
TC8999 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored p...    25  4.4
TC11906 similar to UP|O82058 (O82058) Glucose-6-phosphate isomer...    25  4.4
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li...    25  4.4
TC13341                                                                25  4.4
AV424427                                                               24  5.8
TC13830 similar to UP|Q94B40 (Q94B40) Zinc finger-like protein, ...    24  5.8
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k...    24  5.8

>BP065897 
          Length = 499

 Score = 28.9 bits (63), Expect = 0.24
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 1   MASVTVNPSLFRSESLGHYYDYNYY 25
           M   T  PSL+   +L HYY+Y YY
Sbjct: 494 MKMTTKKPSLWTEAALLHYYNYYYY 420


>TC14616 
          Length = 1353

 Score = 28.5 bits (62), Expect = 0.31
 Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
 Frame = -3

Query: 13  SESLGHYYDYNYYPD--QNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIRAKKVLW 67
           +++L H YDY  Y D  +NY +  ++ L      +  K+SF          AK +LW
Sbjct: 913 AKTLNHIYDYQKYTDLSENYFVYRRQTL-----PYASKESFFLHSASVEDSAKNILW 758


>TC9190 similar to UP|Q9FQD3 (Q9FQD3) Glutathione S-transferase GST 25  ,
           partial (44%)
          Length = 540

 Score = 27.3 bits (59), Expect = 0.69
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = -3

Query: 1   MASVTVNPSLFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLI 60
           M S     +L  + S+ H Y +N+  +Q Y+ ++  QL +RS+ F  K         SL+
Sbjct: 448 MQSNVAGGNLMAT*SILH*YKFNHTVNQ-YSQLQFLQLNMRSH-FSPK---------SLV 302

Query: 61  RAKKVLWLRLWSS 73
           +    +WL LW S
Sbjct: 301 QLACCIWLVLWQS 263


>BP032642 
          Length = 562

 Score = 27.3 bits (59), Expect = 0.69
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 88  RCTFYYRRRRFSRLLNRHHRSKTESSSCFW 117
           RCT+++R +RF ++    H +  ++S   W
Sbjct: 513 RCTYWWRSKRFQKVXYEGHLA*MDTSHLLW 424


>TC17052 similar to PIR|E86320|E86320 F6A14.21 protein - Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (20%)
          Length = 748

 Score = 26.6 bits (57), Expect = 1.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 54  RIKGSLIRAKKVLWLRLWSSSAGGFRKLVFFPRFR-CTFYYRRRRF 98
           R+    +  KK+ W++   +     R   FF  FR C  Y  RRR+
Sbjct: 144 RMVRCFVWVKKIAWMKSLLNGLSAARLAFFFASFRLCCCYSGRRRY 7


>AV777511 
          Length = 394

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 10/24 (41%), Positives = 13/24 (53%)
 Frame = +1

Query: 92  YYRRRRFSRLLNRHHRSKTESSSC 115
           YY++R  S L  + H    ESS C
Sbjct: 85  YYKKREASTLKKKLHMDSVESSHC 156


>TC9962 similar to UP|Q8L7Z6 (Q8L7Z6) AT3g54680/T5N23_40, partial (21%)
          Length = 585

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 55  IKGSLIRAKKVLWLRLWSSSAGGFR 79
           I+G+L RA    WL LW    GG R
Sbjct: 359 IRGTLDRAGLGRWLWLWRCRRGGVR 285


>AV766655 
          Length = 507

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 12/31 (38%), Positives = 16/31 (50%)
 Frame = -1

Query: 55  IKGSLIRAKKVLWLRLWSSSAGGFRKLVFFP 85
           IK SL+ A  +LW+ LWS  +      V  P
Sbjct: 387 IKISLLFAAGLLWIELWSRRSAAATATVSIP 295


>BP040784 
          Length = 521

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 10/34 (29%), Positives = 17/34 (49%)
 Frame = -2

Query: 60  IRAKKVLWLRLWSSSAGGFRKLVFFPRFRCTFYY 93
           I+     W  L  ++ G +RK +F   F C F++
Sbjct: 250 IKTMSTCWDMLRGTAKGLYRKTIFDAVFHCLFFW 149


>TC15862 homologue to UP|O22339 (O22339) Aquaporin-like transmembrane
           channel protein, partial (61%)
          Length = 576

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 88  RCTFYYRRRRFSRLLNRHHRSKTE 111
           R T  +RRRR S  L+ HH   TE
Sbjct: 139 RTTRSHRRRRSSSRLSSHHGRSTE 210


>BI418710 
          Length = 605

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 67  WLRLWSS--SAGGFRKLVFFPRFRCTFYYRRR 96
           WL+ W       GF KL+    F C FY + +
Sbjct: 217 WLKGWIMLMQEAGFGKLLLLGIFHCVFYLKEQ 312


>TC18472 
          Length = 642

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = +3

Query: 55  IKGSLIRAKKVLWLRLWSSSAGGFRKLVFFPRFRCTFY 92
           +KGS++      W   W  S  GFR +V    F C+F+
Sbjct: 282 MKGSIVCCTL*FW-GCWYMSPKGFR*IVLPTAFLCSFF 392


>TC11875 similar to UP|Q94BV0 (Q94BV0) At1g79600/F20B17_3, partial (5%)
          Length = 526

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 19  YYD-YNYYPDQNYTMMEKR--QLFLRSYQFCQKK 49
           YYD Y+Y+ D+  TMM K   QLF  +++   KK
Sbjct: 426 YYDLYSYHDDKASTMMSKSYIQLFGPNWKIQTKK 325


>TC8999 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored protein
           {Arabidopsis thaliana;} , partial (34%)
          Length = 862

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +3

Query: 78  FRKLVFFP------RFRCTFYYRRRRFSRLLNRH 105
           F  L+F P      R    F+YRRRR + +L+ H
Sbjct: 309 FSTLIFTPTGESPFRGLTAFFYRRRRMTVILHAH 410


>TC11906 similar to UP|O82058 (O82058) Glucose-6-phosphate isomerase
           precursor  (GPI) (Phosphoglucose isomerase) (PGI)
           (Phosphohexose isomerase) (PHI) , partial (9%)
          Length = 432

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (59%)
 Frame = -1

Query: 36  RQLFLRSYQFCQKKSFTERIKGSLIRAKKV 65
           R+ F+ + +       TER++GSL+R  KV
Sbjct: 306 RRCFVTAERSAGASRATERVRGSLVRVGKV 217


>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
           2 precursor (Phytocyanin-like protein), partial (31%)
          Length = 1482

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 95  RRRFSRLLNRHH 106
           RRRF R+L RHH
Sbjct: 943 RRRFRRILRRHH 978


>TC13341 
          Length = 616

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 105 HHRSKTESSSCFW 117
           H RSKT  S CFW
Sbjct: 119 HSRSKTNGS*CFW 157


>AV424427 
          Length = 281

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 76  GGFRKLVFFPRFRCTFY-YRRRRFSRLLNRHHRSK 109
           G F   + F   R +FY YRR R   ++ RH R +
Sbjct: 88  GTFSS*IIFSDRRISFYHYRRIRCCAIVRRHRREE 192


>TC13830 similar to UP|Q94B40 (Q94B40) Zinc finger-like protein, partial
           (37%)
          Length = 648

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 94  RRRRFSRLLNRHHRSK 109
           RRRR  R L  HHRS+
Sbjct: 95  RRRRSRRRLGNHHRSR 48


>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
           partial (16%)
          Length = 486

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 10/21 (47%), Positives = 12/21 (56%)
 Frame = +2

Query: 95  RRRFSRLLNRHHRSKTESSSC 115
           RRR  R L RHH+ +  S  C
Sbjct: 392 RRRHLRPLQRHHQQQPPSKPC 454


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.329    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,795,891
Number of Sequences: 28460
Number of extensions: 42628
Number of successful extensions: 351
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of query: 117
length of database: 4,897,600
effective HSP length: 78
effective length of query: 39
effective length of database: 2,677,720
effective search space: 104431080
effective search space used: 104431080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)