BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.4
(422 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP067967 59 1e-09
TC12871 similar to UP|Q8H4R9 (Q8H4R9) OJ1457_D07.1 protein, part... 33 0.089
TC10663 similar to UP|Q8VYH1 (Q8VYH1) AT5g65000/MXK3_23, partial... 31 0.44
AV777395 30 0.57
TC20026 28 2.2
AV410037 28 2.8
BP034213 28 2.8
TC10937 similar to PIR|C96522|C96522 F11A17.20 [imported] - Arab... 28 3.7
BP042662 27 4.9
TC18791 27 6.3
TC14677 similar to PIR|T39903|T39903 serine-rich protein - fissi... 27 6.3
BP055557 27 6.3
BP063951 27 6.3
BP040145 27 8.3
TC16944 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, p... 27 8.3
TC16151 similar to UP|Q9ZR53 (Q9ZR53) Annexin-like protein, part... 27 8.3
AU251442 27 8.3
>BP067967
Length = 470
Score = 59.3 bits (142), Expect = 1e-09
Identities = 27/28 (96%), Positives = 28/28 (99%)
Frame = -3
Query: 394 SVPYDLTLIDLDLSDHPEKVPAVDKAGT 421
SVPYDLTLIDLDLSDHPEKVPA+DKAGT
Sbjct: 468 SVPYDLTLIDLDLSDHPEKVPALDKAGT 385
>TC12871 similar to UP|Q8H4R9 (Q8H4R9) OJ1457_D07.1 protein, partial (23%)
Length = 770
Score = 33.1 bits (74), Expect = 0.089
Identities = 15/45 (33%), Positives = 27/45 (59%)
Frame = -3
Query: 41 QRYIVRIVFMVPVYALMSFLSLVLPASSIYFNSIREVYEAWVIYN 85
Q +I ++VF PV ++ + P+ SIY +++Y+ WVI+N
Sbjct: 741 QSFIEKVVFQAPVGHVLIHQQPLDPSFSIYRAESQKLYQIWVIHN 607
>TC10663 similar to UP|Q8VYH1 (Q8VYH1) AT5g65000/MXK3_23, partial (27%)
Length = 584
Score = 30.8 bits (68), Expect = 0.44
Identities = 15/40 (37%), Positives = 20/40 (49%)
Frame = +1
Query: 25 LLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFLSLVL 64
L IYKHLVNY P + + + Y +SF SL +
Sbjct: 346 LSRIYKHLVNYRRPAFFPRVFLFSIELEYYPELSFFSLYM 465
>AV777395
Length = 607
Score = 30.4 bits (67), Expect = 0.57
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 160 YKDGNFSPKQSYLYLTIIYTFSYTMALYALALFYVAC 196
++ ++SP Y Y T+ +F +T L+ L +FY+ C
Sbjct: 27 FRYSSYSP--DYTYPTVCTSFPFTFTLFTLHIFYLGC 131
>TC20026
Length = 466
Score = 28.5 bits (62), Expect = 2.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 107 RVLKPSWFLMTCCLSPIPLDGRFIR---KCKQGGLQFVILK 144
+ L SW+L+ CC S R +R C +GGL+ ILK
Sbjct: 206 KALNCSWYLLLCCKSQ-----RLVRIT*MCLRGGLEVWILK 313
>AV410037
Length = 425
Score = 28.1 bits (61), Expect = 2.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 286 GHALMLNDFYHDTVHQFAPTYHDY 309
GHA + FY D VHQ PT D+
Sbjct: 402 GHACHYHYFYQDAVHQHIPTKVDH 331
>BP034213
Length = 597
Score = 28.1 bits (61), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 344 HMFENKVDDIQLSRFSSSNSSTPSNSGPISDVSH 377
HM+ + +LS F +S + +NSGP+S SH
Sbjct: 14 HMYAGPMGYTKLSHFGTSLGNIGTNSGPLSLPSH 115
>TC10937 similar to PIR|C96522|C96522 F11A17.20 [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (21%)
Length = 551
Score = 27.7 bits (60), Expect = 3.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 155 YVKGKYKDGNFSPKQSYLYLTIIYTFSYTMALYALALFYVAC 196
Y++G N+ QS L L I YT ++T+ Y LAL ++ C
Sbjct: 544 YMRGLTNQKNWGGGQSPLVLDI-YTTNFTVKDYFLALHFLEC 422
>BP042662
Length = 484
Score = 27.3 bits (59), Expect = 4.9
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 8/40 (20%)
Frame = -1
Query: 98 GAVVLSLSGR--------VLKPSWFLMTCCLSPIPLDGRF 129
G ++LS+SGR + WF + CC+ PL+ F
Sbjct: 442 GILILSISGRNS*RKNLMYIHLGWFFLKCCVQDQPLNLHF 323
>TC18791
Length = 412
Score = 26.9 bits (58), Expect = 6.3
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +2
Query: 217 FLTYWQGVLVFLAAKSK 233
F+T W G ++FL+AK K
Sbjct: 83 FITLWNGAVIFLSAKDK 133
>TC14677 similar to PIR|T39903|T39903 serine-rich protein - fission yeast
(Schizosaccharomyces pombe)
{Schizosaccharomyces pombe;}, partial (3%)
Length = 616
Score = 26.9 bits (58), Expect = 6.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 351 DDIQLSRFSSSNSSTPSNSGPISD 374
D++ S F SS SSTP S P+S+
Sbjct: 201 DNVGNSNFGSSGSSTPLRSPPVSN 130
>BP055557
Length = 501
Score = 26.9 bits (58), Expect = 6.3
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +3
Query: 158 GKYKDGNFSPKQSYLYLTIIYTFSYTMALYALALFYV 194
GKYK+ F+ + L + +T T+ YAL LFY+
Sbjct: 282 GKYKEYIFTSSEVILVDSDTFTLLMTLNTYAL*LFYL 392
>BP063951
Length = 501
Score = 26.9 bits (58), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 168 KQSYLYLTIIYTFSYTMALYALALFYVACKDLLHPFN 204
+Q +L+L+I+ + L AL ++C L+H FN
Sbjct: 367 RQDFLFLSILGLSPLLLLLKALKYHMISCLKLIHWFN 477
>BP040145
Length = 530
Score = 26.6 bits (57), Expect = 8.3
Identities = 14/47 (29%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = +1
Query: 73 SIREVYEAWVIYNFLSLCLAW-VGGPGAVVLSLSGRV--LKPSWFLM 116
+IRE Y +W+ N S W +G +++ G V + PSW ++
Sbjct: 325 NIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHML 465
>TC16944 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, partial
(29%)
Length = 1198
Score = 26.6 bits (57), Expect = 8.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -3
Query: 109 LKP-SW----FLMTC-CLSPIPLDGRFIRKCKQGGLQFVIL 143
LKP SW L C CL+P G +RK K GG + ++L
Sbjct: 791 LKPGSW*AQFVLQACACLNPWDKGGGSVRKAKLGGRKLIVL 669
>TC16151 similar to UP|Q9ZR53 (Q9ZR53) Annexin-like protein, partial (31%)
Length = 587
Score = 26.6 bits (57), Expect = 8.3
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = -3
Query: 173 YLTIIYTFSYTMALYALALFYVACKDLLHPFNPVPKFIIIKSVVFLTYWQGV 224
+ +Y F Y+ +Y +++ + L+ + VPK I F Y+ G+
Sbjct: 252 FRVFLYFFKYSALIYCISISVLVTMTLMRVVSLVPKPFIALCNTFAKYFAGL 97
>AU251442
Length = 381
Score = 26.6 bits (57), Expect = 8.3
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +3
Query: 4 HLPIYLYIVAFLCTIGAVSLALLHIYKHLVNYTEPTYQRYIVRIVFMVPVYALMSFLSLV 63
HLPI I+ L + L H KHL+ + + RI P + + LV
Sbjct: 117 HLPIIFPIMPLLLAGTQLRLLPHHTNKHLITASHNRFHFAATRISLSTPGFPSRRIV-LV 293
Query: 64 LPASSIYFNSI 74
PA S N +
Sbjct: 294 PPAKSASINGV 326
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.141 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,910,042
Number of Sequences: 28460
Number of extensions: 124596
Number of successful extensions: 904
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of query: 422
length of database: 4,897,600
effective HSP length: 93
effective length of query: 329
effective length of database: 2,250,820
effective search space: 740519780
effective search space used: 740519780
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0048.4