BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0047b.8
(171 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10669 similar to UP|Q9ZWN0 (Q9ZWN0) GPI-anchored protein, part... 347 5e-97
AV768204 49 6e-07
TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase ki... 27 1.4
TC10615 similar to UP|Q9LEC9 (Q9LEC9) Alpha-glucosidase , parti... 27 1.4
TC8228 similar to UP|GPX4_CITSI (Q06652) Probable phospholipid h... 27 2.4
BU494147 27 2.4
TC8895 similar to GB|AAD18096.1|4337175|T31J12 ESTs gb|T20589, g... 26 3.2
AV771263 26 3.2
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete 26 3.2
AV772733 26 3.2
AV425920 26 3.2
AV406695 26 3.2
TC13300 similar to GB|AAP13387.1|30023708|BT006279 At3g52220 {Ar... 26 3.2
BP071335 26 4.2
BI417283 26 4.2
TC14228 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (67%) 25 5.4
TC14993 similar to UP|O04237 (O04237) Transcription factor, part... 25 5.4
TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase , co... 25 5.4
AV424050 25 5.4
TC14872 UP|Q40208 (Q40208) RAB2A, complete 25 7.1
>TC10669 similar to UP|Q9ZWN0 (Q9ZWN0) GPI-anchored protein, partial (87%)
Length = 1031
Score = 347 bits (891), Expect = 5e-97
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +1
Query: 1 MAFSLNQRFLLSSSLLLLILALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGCSVNF 60
MAFSLNQRFLLSSSLLLLILALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGCSVNF
Sbjct: 265 MAFSLNQRFLLSSSLLLLILALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGCSVNF 444
Query: 61 EFLNYTIITSKCKGPSYPPKDCCGAFKEFACPYVDVLNDLTNDCASTMFSYINLYGKYPP 120
EFLNYTIITSKCKGPSYPPKDCCGAFKEFACPYVDVLNDLTNDCASTMFSYINLYGKYPP
Sbjct: 445 EFLNYTIITSKCKGPSYPPKDCCGAFKEFACPYVDVLNDLTNDCASTMFSYINLYGKYPP 624
Query: 121 GLFAHECREGKEGLACPALPPSALADDTSSQVVHFPSLVLVLTACFLILLF 171
GLFAHECREGKEGLACPALPPSALADDTSSQVVHFPSLVLVLTACFLILLF
Sbjct: 625 GLFAHECREGKEGLACPALPPSALADDTSSQVVHFPSLVLVLTACFLILLF 777
>AV768204
Length = 268
Score = 48.5 bits (114), Expect = 6e-07
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3
Query: 139 LPPSALADDTSSQVVHFPSLVLVLTACFLI 168
LPPSALAD+TSSQV HFPSL L LTA FLI
Sbjct: 266 LPPSALADNTSSQVGHFPSLELGLTASFLI 177
>TC16554 homologue to UP|AAN71719 (AAN71719) Glycogen synthase kinase 3
beta protein kinase DWARF12 , partial (71%)
Length = 927
Score = 27.3 bits (59), Expect = 1.4
Identities = 17/31 (54%), Positives = 21/31 (66%)
Frame = +3
Query: 10 LLSSSLLLLILALSVSSSSSSSTFLSDAVFG 40
L SLLLL+L S++SSSSSS LS + G
Sbjct: 33 LFLHSLLLLLLHPSLASSSSSSLSLSLVLHG 125
>TC10615 similar to UP|Q9LEC9 (Q9LEC9) Alpha-glucosidase , partial (13%)
Length = 548
Score = 27.3 bits (59), Expect = 1.4
Identities = 21/68 (30%), Positives = 33/68 (47%)
Frame = +2
Query: 11 LSSSLLLLILALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGCSVNFEFLNYTIITS 70
LSS LL L L +V++SSSSS+ S + ++ G +L+ ++ L +
Sbjct: 50 LSSLLLTLFLCAAVATSSSSSSSSSSSSNATKIGQGYSLISIEETPDGGLIGLLQVKKKT 229
Query: 71 KCKGPSYP 78
K GP P
Sbjct: 230 KTYGPDIP 253
>TC8228 similar to UP|GPX4_CITSI (Q06652) Probable phospholipid
hydroperoxide glutathione peroxidase (PHGPx)
(Salt-associated protein) , partial (95%)
Length = 883
Score = 26.6 bits (57), Expect = 2.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 148 TSSQVVHFPSLVLVLTACFLILLF 171
+SSQ++ PS VL+ C L+L+F
Sbjct: 39 SSSQILPSPSRVLITLLCLLLLVF 110
>BU494147
Length = 471
Score = 26.6 bits (57), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -1
Query: 12 SSSLLLLILALSVSSSSSSSTFLSDAVFGSQA 43
S +LLLLIL S ++ SSTF + F S +
Sbjct: 384 SEALLLLILPFSSEDNAPSSTFFISSRFASNS 289
>TC8895 similar to GB|AAD18096.1|4337175|T31J12 ESTs gb|T20589, gb|T04648,
gb|AA597906, gb|T04111, gb|R84180, gb|R65428, gb|T44439,
gb|T76570, gb|R90004, gb|T45020, gb|T42457, gb|T20921,
gb|AA042762 and gb|AA720210 come from this gene.
{Arabidopsis thaliana;}, partial (63%)
Length = 1089
Score = 26.2 bits (56), Expect = 3.2
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = -3
Query: 10 LLSSSLLLLILALSVS-------SSSSSSTFLSDAVFGSQAHTGRNLL 50
++++SL+ LIL + +S +SSS+++FL +F H G LL
Sbjct: 634 IITTSLIRLILMIHISDLFNLNSTSSSTNSFLHMFIFFLLNHPGNRLL 491
>AV771263
Length = 345
Score = 26.2 bits (56), Expect = 3.2
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = -1
Query: 141 PSALADDTSSQVVHFPSLVLVLTACFLILLF 171
PSALA + HF +LVL F++L F
Sbjct: 144 PSALARSG*YSIKHFEALVLFFVFIFIVLTF 52
>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
Length = 1064
Score = 26.2 bits (56), Expect = 3.2
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = -2
Query: 23 SVSSSSSSSTFLSDAVFGSQAHTGRNLLQA 52
SVSSSSSSS+ LS ++ S + + + L+A
Sbjct: 553 SVSSSSSSSSSLSSSLLTSTSESSASTLRA 464
>AV772733
Length = 674
Score = 26.2 bits (56), Expect = 3.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 76 SYPPKDCCGAFKEFACPYVDVLNDLTNDCAS 106
+YP C GA++ P V VLN L CAS
Sbjct: 543 TYPAMHCRGAYRHRXAPKVCVLNSLY--CAS 457
>AV425920
Length = 386
Score = 26.2 bits (56), Expect = 3.2
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Frame = +2
Query: 20 LALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGCSVNFEFLNYTI-------ITSKC 72
+A S S +S S ++++ FG Q+ TG + ++ ++ + L I + S
Sbjct: 38 VAPSNSGENSISKSMAESQFGFQS-TGTTMAESNPSATLIIKHLPEAIPHDTLSRLLSHY 214
Query: 73 KGPSYPPKDCCGAFKEFACPYVDVLNDLTNDCASTMFSYINLYGK 117
S P C A + C +VD ND+ A + + GK
Sbjct: 215 NASSVRP---CSAARLRNCAFVDFKNDMLASQAQRQLNGLRFLGK 340
>AV406695
Length = 421
Score = 26.2 bits (56), Expect = 3.2
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 2 AFSLNQRFLLSSSLLLLILALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGC 56
A SL + +L++ + +++ ++ + F+SD+V ++ HTG + GC
Sbjct: 159 AHSLRKSKVLTAVAIGILIGCILAFLFPNGFFISDSVTPNRPHTGSKTQENSAGC 323
>TC13300 similar to GB|AAP13387.1|30023708|BT006279 At3g52220 {Arabidopsis
thaliana;}, partial (13%)
Length = 488
Score = 26.2 bits (56), Expect = 3.2
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -3
Query: 13 SSLLLLILALSVSSSSSSSTFLSD 36
SS L +L L +SSS +SS FLSD
Sbjct: 72 SSFLSSLLFLLLSSSEASSAFLSD 1
>BP071335
Length = 306
Score = 25.8 bits (55), Expect = 4.2
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Frame = +2
Query: 111 YINLYGKYPPGLFAHECREGKEGLACPALPPSALADD-------TSSQVVHFPSLVLVLT 163
+I Y + L H C E + CP + PS A + PSL LVL
Sbjct: 14 WIAWYESFHQYLQTHPCILYIESIICPQIAPSLTATPDVIACFRMVMNSIDHPSLFLVLA 193
Query: 164 AC 165
+C
Sbjct: 194 SC 199
>BI417283
Length = 557
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = +3
Query: 9 FLLSSSLLLLILALSVSSSSSSST 32
FLL LL L+L ++ SSSSSSS+
Sbjct: 54 FLLLPLLLFLLLLVAPSSSSSSSS 125
>TC14228 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (67%)
Length = 1268
Score = 25.4 bits (54), Expect = 5.4
Identities = 17/57 (29%), Positives = 27/57 (46%)
Frame = +2
Query: 111 YINLYGKYPPGLFAHECREGKEGLACPALPPSALADDTSSQVVHFPSLVLVLTACFL 167
++NL GK+ + G+A PS+LAD ++ LV +L+AC L
Sbjct: 572 FVNLLGKWKDSEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACAL 742
>TC14993 similar to UP|O04237 (O04237) Transcription factor, partial (31%)
Length = 846
Score = 25.4 bits (54), Expect = 5.4
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 2/56 (3%)
Frame = -2
Query: 4 SLNQRFLLS--SSLLLLILALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGCS 57
SL FL S S+ + + S S SSS LS F S + TG +L + CS
Sbjct: 194 SLASTFLTSVLSACRAFLFSSSTFSYSSSVISLSSGSFSSFSLTGLSLFPSAASCS 27
>TC14124 UP|Q8H945 (Q8H945) Phosphoenolpyruvate carboxylase , complete
Length = 3367
Score = 25.4 bits (54), Expect = 5.4
Identities = 15/27 (55%), Positives = 19/27 (69%)
Frame = +2
Query: 12 SSSLLLLILALSVSSSSSSSTFLSDAV 38
S S++ L L+ SVSSSSSSS+ L V
Sbjct: 8 SISIVFLSLSSSVSSSSSSSSSLIQLV 88
>AV424050
Length = 274
Score = 25.4 bits (54), Expect = 5.4
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = +3
Query: 8 RFLLSSSLLLLILALSVSSSSSSSTF 33
RFLL LLLL+L LS + S SS +F
Sbjct: 42 RFLLLLLLLLLLLLLSNAPSFSSFSF 119
>TC14872 UP|Q40208 (Q40208) RAB2A, complete
Length = 1125
Score = 25.0 bits (53), Expect = 7.1
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = +3
Query: 15 LLLLILALSVSSSSSSSTFLSDAVFGSQAHT 45
LL L +L SSSSSS+ FL SQ H+
Sbjct: 114 LLTLFSSLLFSSSSSSTFFLCSEFERSQLHS 206
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,012,389
Number of Sequences: 28460
Number of extensions: 69555
Number of successful extensions: 533
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of query: 171
length of database: 4,897,600
effective HSP length: 84
effective length of query: 87
effective length of database: 2,506,960
effective search space: 218105520
effective search space used: 218105520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0047b.8