BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0046a.3
(160 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV771863 29 0.44
TC14122 similar to UP|Q9FE12 (Q9FE12) Peroxiredoxin precursor, c... 27 2.2
TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, parti... 26 3.7
TC19657 26 3.7
TC11880 25 4.9
TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protei... 25 4.9
TC10285 25 4.9
CB829372 25 4.9
AI967326 25 4.9
TC9547 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pro... 25 6.4
TC7970 similar to UP|ADK2_ARATH (Q9LZG0) Adenosine kinase 2 (AK... 25 6.4
BP081946 25 8.3
>AV771863
Length = 511
Score = 28.9 bits (63), Expect = 0.44
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = -3
Query: 132 KTMEAFLIILSATQLFYIAAIH 153
+ +EAF+IIL+ TQL Y+ IH
Sbjct: 509 RIVEAFIIILTFTQLLYLMLIH 444
>TC14122 similar to UP|Q9FE12 (Q9FE12) Peroxiredoxin precursor, complete
Length = 1107
Score = 26.6 bits (57), Expect = 2.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -2
Query: 52 FSPIFFPMGNASTGFFVTFALIAGVVGAASAISGINH---IRSWTAESL 97
FSP F P G S+GF T+ V+ +S + I + W SL
Sbjct: 815 FSPGFHPAGQTSSGFSCTYCKAWSVLLVSSTLLPIPRLLMVECWITPSL 669
>TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, partial (89%)
Length = 1130
Score = 25.8 bits (55), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = -3
Query: 52 FSPIFFPMGNASTGFFVTFALIAGVVGAASAI 83
FSP F P G S+GF T+ V+ +S +
Sbjct: 789 FSPGFHPAGQTSSGFSCTYCKAWSVLFVSSTL 694
>TC19657
Length = 632
Score = 25.8 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 24 VLGIGGWAMNRAIDQGFIIGPELQL 48
+LGIGG + +D+G + P L+L
Sbjct: 547 LLGIGGGVVGEMLDKGAFVAPMLRL 473
>TC11880
Length = 509
Score = 25.4 bits (54), Expect = 4.9
Identities = 16/45 (35%), Positives = 19/45 (41%)
Frame = +1
Query: 12 LLLGLNFCMYVIVLGIGGWAMNRAIDQGFIIGPELQLPAHFSPIF 56
+LLGL F M + IG +D IIG LP H F
Sbjct: 4 ILLGLKFSMTGNFVKIGSDMYEVTMDDAAIIGGAFGLPLHMDNKF 138
>TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protein, partial
(79%)
Length = 733
Score = 25.4 bits (54), Expect = 4.9
Identities = 16/68 (23%), Positives = 28/68 (40%)
Frame = +3
Query: 52 FSPIFFPMGNASTGFFVTFALIAGVVGAASAISGINHIRSWTAESLPSAASVATMAWTLT 111
+ P F +G F+ F A + A + + + W A S + + ++AW +
Sbjct: 192 YHPFVFNLGFFFAIFYALF--YAALDLKAGSFTAFLTLLCWVASSFVANSLGFSLAWKVV 365
Query: 112 LLAMGFAW 119
L A F W
Sbjct: 366 LAAQIFCW 389
>TC10285
Length = 794
Score = 25.4 bits (54), Expect = 4.9
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Frame = +3
Query: 68 VTFALIAGVVGAASAISGINH--IRSWTAESLPSAASVATMAWTLTLLAMGF 117
++ L+AG+V SAI I I + + VA MAW L ++ +GF
Sbjct: 333 ISSRLLAGIVFVLSAIYTIVVCVILKYGTNLGSDSYFVAAMAWVLLIIVLGF 488
>CB829372
Length = 486
Score = 25.4 bits (54), Expect = 4.9
Identities = 21/67 (31%), Positives = 29/67 (42%)
Frame = +1
Query: 47 QLPAHFSPIFFPMGNASTGFFVTFALIAGVVGAASAISGINHIRSWTAESLPSAASVATM 106
Q+P+ F P FFP G+ G F A G A NH ++ AA A++
Sbjct: 163 QIPSGFFPKFFPPGSFLVGLSSIFWREAWKYG-ERAFRYCNHDVGHAIAAVAMAA--ASL 333
Query: 107 AWTLTLL 113
W + LL
Sbjct: 334 GWEVKLL 354
>AI967326
Length = 472
Score = 25.4 bits (54), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 83 ISGINHIRSWTAESLPSAASVATMAWTLTLLAMGF 117
I+ +N +R W + L + A W L LLA F
Sbjct: 103 ITALNWLRPWHEQLLQAFFVAAKCIWLLHLLAFSF 207
>TC9547 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (22%)
Length = 558
Score = 25.0 bits (53), Expect = 6.4
Identities = 11/19 (57%), Positives = 14/19 (72%), Gaps = 1/19 (5%)
Frame = +1
Query: 39 GFIIG-PELQLPAHFSPIF 56
GF+ G PELQ P FSP++
Sbjct: 352 GFLFGLPELQNPPSFSPLY 408
>TC7970 similar to UP|ADK2_ARATH (Q9LZG0) Adenosine kinase 2 (AK 2)
(Adenosine 5'-phosphotransferase 2) , partial (97%)
Length = 1482
Score = 25.0 bits (53), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 49 PAHFSPIFFPMGNASTGFFVTFALIAGVVGAASAI 83
PA F F +GN+ TG VTF A G+A +
Sbjct: 954 PAPFVSTNFSLGNSITGNNVTFPSSATHTGSAPCV 850
>BP081946
Length = 476
Score = 24.6 bits (52), Expect = 8.3
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = -2
Query: 19 CMYVIVLGIGGWAMNRA 35
CMY++VL + G+ NRA
Sbjct: 289 CMYIVVLSLVGFPGNRA 239
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.328 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,691,755
Number of Sequences: 28460
Number of extensions: 33356
Number of successful extensions: 221
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of query: 160
length of database: 4,897,600
effective HSP length: 83
effective length of query: 77
effective length of database: 2,535,420
effective search space: 195227340
effective search space used: 195227340
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0046a.3