BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.8
(1555 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427422 201 7e-52
BP054462 166 2e-41
BP055130 133 2e-31
BP046863 127 1e-29
BF177840 101 8e-22
AU089582 75 1e-19
BG662087 94 2e-19
BP063723 84 2e-16
BP055633 82 5e-16
AV410603 73 3e-13
TC13302 72 5e-13
AV426985 64 2e-10
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 59 8e-09
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 48 1e-05
BP063336 41 0.002
TC18698 40 0.002
AV410570 38 0.014
BP085845 37 0.024
TC15704 similar to UP|O22265 (O22265) Expressed protein (At2g474... 35 0.091
AV777492 35 0.091
>AV427422
Length = 417
Score = 201 bits (511), Expect = 7e-52
Identities = 84/137 (61%), Positives = 111/137 (80%)
Frame = +1
Query: 1179 GLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDR 1238
GLPK+ G + +LVVVDR +K++HF+ L HPY AK +A++F++E+V+LHG P SIVSDRD
Sbjct: 7 GLPKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDP 186
Query: 1239 VFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSW 1298
+F+S+FW ELFK+ GTKLK S+AYHP++DGQTEVVNRC+ETYLRC +PK W W+ W
Sbjct: 187 LFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPW 366
Query: 1299 AEFWYNTNYHSAIKTTP 1315
AE+WYNT+YH + TP
Sbjct: 367 AEYWYNTSYHVSTGQTP 417
>BP054462
Length = 422
Score = 166 bits (421), Expect = 2e-41
Identities = 76/140 (54%), Positives = 107/140 (76%)
Frame = +1
Query: 1304 NTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQN 1363
N+NY+ + K +PFQALYGREPPV+++GT + + V + R+ L L+ NL K+Q+
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1364 RMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAY 1423
M+ ANK RRD+ ++GD V+LK+QPY+ +SLA++ N+KLSPR+YGPYP++ KI AVAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1424 KLQLPEGSQVHPVFHVSLLK 1443
+L+LP S+VHPVFHVSLLK
Sbjct: 361 RLELPAHSRVHPVFHVSLLK 420
>BP055130
Length = 567
Score = 133 bits (334), Expect = 2e-31
Identities = 61/112 (54%), Positives = 75/112 (66%)
Frame = +2
Query: 1185 GKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSF 1244
G I+VVVDR +KY HF Y + +VAE F+ IVKLHG P +IVSDRD+ F S+F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 1245 WSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWL 1296
W FKL GT L SS+YHPQTDGQTE +N+C+E YLRC P+ W +L
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
>BP046863
Length = 580
Score = 127 bits (319), Expect = 1e-29
Identities = 63/109 (57%), Positives = 84/109 (76%)
Frame = +1
Query: 1336 SVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKS 1395
SV V + ER+ L L+ NL KAQ++M+ QANKHRR + +VG+ V+LK+QPYKL++
Sbjct: 253 SVEAVNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQN 432
Query: 1396 LARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKK 1444
LA+RKNQKLSPRFYGP+ V+E++ VAY L L S+VHPVFH+SLL+K
Sbjct: 433 LAQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSESRVHPVFHLSLLEK 579
>BF177840
Length = 410
Score = 101 bits (252), Expect = 8e-22
Identities = 50/95 (52%), Positives = 59/95 (61%)
Frame = +2
Query: 1230 TSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKP 1289
TSIVSDRD F+S FW L+ GTKL +S+ HPQTDGQTEVVN+ + T LR V
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 1290 KQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREP 1324
K W WL EF YN HS K +PF+ +YG P
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNP 295
>AU089582
Length = 383
Score = 75.1 bits (183), Expect(2) = 1e-19
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +2
Query: 1211 AKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQT 1270
A + A++++ EIV LHG P SI+SDR F S FW GT+LK S+A+HPQTDGQ+
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1271 EVVNRCVETYLR-CV 1284
E + +E LR CV
Sbjct: 191 ERTIQILEDMLRACV 235
Score = 40.0 bits (92), Expect(2) = 1e-19
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 1292 WPKWLSWAEFWYNTNYHSAIKTTPFQALYGR 1322
W ++LS EF YN +Y S+I PF+ALYGR
Sbjct: 255 WDQYLSLMEFAYNNSYRSSI*MAPFEALYGR 347
>BG662087
Length = 373
Score = 94.0 bits (232), Expect = 2e-19
Identities = 47/113 (41%), Positives = 68/113 (59%)
Frame = +1
Query: 669 GGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPK 728
G WR VDY LNK D +P+P ID+L+D E+ S +D SGYHQI+M D K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 729 TAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYS 781
TAF T +Y Y +PFGL NA +T+Q LM++V + + + V+ ++++ S
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKS 354
>BP063723
Length = 479
Score = 84.0 bits (206), Expect = 2e-16
Identities = 34/58 (58%), Positives = 46/58 (78%)
Frame = -3
Query: 1487 VKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRDDTDPLVRPRFGKVYTRKPK 1544
++WK++P FE+SWED+ +LL+ FP H LED++ LQGGRD +P RPRFG VY R+PK
Sbjct: 477 IRWKDLPTFEDSWEDFCKLLDPFPNHQLEDQLNLQGGRDVANPSSRPRFGDVYARRPK 304
>BP055633
Length = 528
Score = 82.4 bits (202), Expect = 5e-16
Identities = 41/99 (41%), Positives = 62/99 (62%)
Frame = -2
Query: 160 VRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKG 219
V W FK+A++ +FQ +PF LL+ KQ+GSV E+ FE A ++ D E
Sbjct: 527 VTTWTKFKEAMLEQFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMD 348
Query: 220 VFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAM 258
+F+NGL EEI AE+KLY + L ++ +AL++E+KN A+
Sbjct: 347 IFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAV 231
>AV410603
Length = 162
Score = 73.2 bits (178), Expect = 3e-13
Identities = 32/53 (60%), Positives = 41/53 (76%)
Frame = +1
Query: 684 TIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEG 736
T+ D FP+P +DELLDE+ ++ FSKLDL+SGYHQI ++ ED KT FRTH G
Sbjct: 4 TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>TC13302
Length = 533
Score = 72.4 bits (176), Expect = 5e-13
Identities = 57/148 (38%), Positives = 72/148 (48%), Gaps = 31/148 (20%)
Frame = -2
Query: 1308 HSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMT------------AERNLFLDTLK 1355
H AIKT PF+ALY R ++IKG SLASV++V + E + + K
Sbjct: 520 HLAIKTNPFKALYERNTLMVIKGGVSLASVDDVITLNRVVEKPCIDYRYGENSPYKG*SK 341
Query: 1356 -------------------ENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSL 1396
E KA N+M+QQ +HRRDIQL VGDMV P
Sbjct: 340 PHPLS*LLR*S*A*PKF**EQ*AKATNQMRQQV-RHRRDIQLHVGDMV*SN-NPTL*TRA 167
Query: 1397 ARRKNQKLSPRFYGPYPVIEKINAVAYK 1424
+R N KL PRFYG + ++EKIN V K
Sbjct: 166 YQRVNHKLCPRFYGTHEMVEKINPVV*K 83
>AV426985
Length = 422
Score = 63.5 bits (153), Expect = 2e-10
Identities = 35/135 (25%), Positives = 67/135 (48%), Gaps = 3/135 (2%)
Frame = +1
Query: 341 LTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEGEDEEEE---EEVFEEAEDGE 397
++ E+Q R + LC+ C EK+ H C K ++ + E++ ++ ++V D
Sbjct: 16 ISPAEMQLRREKNLCYWCDEKFSFNHKCPNKYLMMLQLTDENDSDDTSNQQVTTTISDDS 195
Query: 398 FVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIPV 457
V + SLN+ G T + + G+IG + +LVD G++ F+ + L++P+
Sbjct: 196 PVEDH---HFSLNAMRGFTGVGTIRFTGQIGNISVQVLVDGGSSDCFLQPHIAKFLQLPI 366
Query: 458 VATSEYVVEVGNGAR 472
+ + V VGNG +
Sbjct: 367 ESKPNFKVLVGNGQK 411
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 58.5 bits (140), Expect = 8e-09
Identities = 27/46 (58%), Positives = 37/46 (79%), Gaps = 1/46 (2%)
Frame = +3
Query: 1400 KNQKLSPRFYGPYPVIEKINAVAYKLQL-PEGSQVHPVFHVSLLKK 1444
K KLSPRF GP+ V+E++ +V+Y+L L P+ S VHPVFHVS+L+K
Sbjct: 39 KKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRK 176
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/71 (36%), Positives = 38/71 (52%)
Frame = +2
Query: 1253 GTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIK 1312
G +++FSS HPQT+GQTE N+ + ++ +W L + YNT S+IK
Sbjct: 62 GIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIVLWSYNTMPQSSIK 241
Query: 1313 TTPFQALYGRE 1323
TPF YG +
Sbjct: 242 ETPF*LTYGAD 274
>BP063336
Length = 539
Score = 40.8 bits (94), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = -1
Query: 1517 KVILQGGRDDT--DPLVRPRFGKVYTRKPKQVQAVPDE 1552
K +L G DT +P RPRFG+VY R+PKQV A P +
Sbjct: 362 KALLGSGVQDTVANPNTRPRFGRVYERRPKQVLAAPGD 249
>TC18698
Length = 808
Score = 40.4 bits (93), Expect = 0.002
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = -2
Query: 728 KTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLH 787
KT + + +Y Y V+P GL N +T+Q LM+++ + K V V+ D+++ S+ H
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FH 622
Query: 788 KEHL 791
+ L
Sbjct: 621 RGDL 610
>AV410570
Length = 412
Score = 37.7 bits (86), Expect = 0.014
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 339 QRLTQTELQERSRRGLCFKCGEKWGREHICAKKNFQL 375
+R++ E+Q R +GLCF C EK+ H C K L
Sbjct: 83 KRISPAEMQLRREKGLCFTCDEKYSWNHKCPNKQLML 193
>BP085845
Length = 464
Score = 37.0 bits (84), Expect = 0.024
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Frame = -2
Query: 1400 KNQKLSPRFYGPYPVIEKINAVAY----KLQLPEGSQVHPVFHVSLL-KKAPNEGVNSQP 1454
K +K + GP+ ++E + +AY L L H V HV+LL + ++ N
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYL---LAAHIVLHVTLLWRNLYDQSQNICH 251
Query: 1455 LPVYMTEEWELKVEPESIIDSRA---GDKGTVEVLVKWKNMPEFENSWEDYTEL 1505
V + E W P ++D + K +V V W+ + E SWE T +
Sbjct: 250 EGVXLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWEYVTSI 89
>TC15704 similar to UP|O22265 (O22265) Expressed protein
(At2g47450/T30B22.25), partial (25%)
Length = 664
Score = 35.0 bits (79), Expect = 0.091
Identities = 18/57 (31%), Positives = 35/57 (60%), Gaps = 3/57 (5%)
Frame = +1
Query: 1447 NEGVNSQPLPVYMTEEWELKVE---PESIIDSRAGDKGTVEVLVKWKNMPEFENSWE 1500
NE VN++ + + ++E +E E+++ R GD+G +E+LVKW ++ + +WE
Sbjct: 181 NEWVNARFVAEDLVRDYEAGLEYAVAEAVVGRRVGDEGKLELLVKWVDLE--QPTWE 345
>AV777492
Length = 472
Score = 35.0 bits (79), Expect = 0.091
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +1
Query: 1273 VNRCVETYLRCVTGAKPKQ 1291
+NRC+E Y RC+TGA+PK+
Sbjct: 403 LNRCLEVYFRCLTGARPKK 459
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,060,437
Number of Sequences: 28460
Number of extensions: 369303
Number of successful extensions: 2540
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2432
length of query: 1555
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1453
effective length of database: 1,994,680
effective search space: 2898270040
effective search space used: 2898270040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0045.8