BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.13
(342 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP056414 95 1e-20
BP080173 86 1e-17
BP036240 83 6e-17
TC13560 69 1e-12
TC19596 69 1e-12
AV411435 62 1e-10
BP069214 60 7e-10
AV407204 57 3e-09
BP043532 57 4e-09
BP053073 57 4e-09
TC18883 55 2e-08
BI418523 53 6e-08
BP068806 45 1e-05
BP066140 44 3e-05
TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%) 44 4e-05
AV428268 44 4e-05
BP052213 40 7e-05
TC11323 43 9e-05
AV412895 43 9e-05
BP076564 43 9e-05
>BP056414
Length = 606
Score = 95.1 bits (235), Expect = 1e-20
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 4/174 (2%)
Frame = -3
Query: 164 RRASYHTVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGT-- 221
R +SYH W+ PP W K N DG++ G A+CGGV RD+ G W GF R+LG
Sbjct: 580 RASSYH-----WTRPPEGWFKVNVDGALSGDLQ-ASCGGVVRDAAGSWSKGFARSLGVLR 419
Query: 222 -SNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLI-NEGSDVLHPYGGMISQIRQ 279
+ EL + + + +P++++ESDS V+L+ N + H YG + I+Q
Sbjct: 418 WHXAFFVELMAVQTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQYGEIAWDIQQ 239
Query: 280 WKDRDWDFQCVHACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVM 333
REAN +AD LA + L FG H D P +LL D+M
Sbjct: 238 KISVHGSIVITSTPREANFLADYLAKVGLSLPFGTHSFDAPFGECHSLLQKDLM 77
>BP080173
Length = 382
Score = 85.5 bits (210), Expect = 1e-17
Identities = 45/109 (41%), Positives = 60/109 (54%)
Frame = -2
Query: 170 TVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAEL 229
T V W P W+K N DGS +SN AACGGV D G ++ G LG + AEL
Sbjct: 360 TTFVRWPVPMEGWIKINIDGSFAPSSNCAACGGVMWDHEGTFITGASVRLGCYFINHAEL 181
Query: 230 WGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIR 278
WGIF ++A RG +++VESDSS V L+N+G P ++ I+
Sbjct: 180 WGIFHGAKIAQARGFKKILVESDSSFVVSLVNQGCSPSKPATPLVKDIK 34
>BP036240
Length = 567
Score = 83.2 bits (204), Expect = 6e-17
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = -3
Query: 175 WSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGT---SNVLWAELWG 231
W+ P W K + DG++ LA+CGGV RDS W+ GFCRN+G NV EL
Sbjct: 562 WTAPDEGWTKFDVDGAL-SRDLLASCGGVLRDSRRHWIKGFCRNMGDLTYHNVFLVELSA 386
Query: 232 IFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVH 291
I S +++A + ++VESD+ A+ L++ + HP+G + + I + + H
Sbjct: 385 IQSAVEIALSMDLQHVIVESDALEAIHLLSSENVHAHPFGSLAASILRMQRDHGSIVFQH 206
Query: 292 ACREANSV 299
REANS+
Sbjct: 205 TPREANSL 182
>TC13560
Length = 571
Score = 68.9 bits (167), Expect = 1e-12
Identities = 46/144 (31%), Positives = 66/144 (44%), Gaps = 3/144 (2%)
Frame = +2
Query: 175 WSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGT---SNVLWAELWG 231
W P WVK N DG+V A+C GV R++ G WL GF N GT +NV EL
Sbjct: 146 WIKPDAGWVKINVDGAVSNCLQ-ASCRGVLRNADGSWLKGFRWNFGTFSSANVFLTELMA 322
Query: 232 IFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVH 291
+ + ++ A + R++VESDS V ++ H Y + I + +
Sbjct: 323 VKTAVEAAMSLDLARVIVESDSLEVVDFLHSTDLGSHRYSQIALDILHLQREHGALVFQY 502
Query: 292 ACREANSVADELANMAHDLDFGIH 315
A R NS+ D +A L +G H
Sbjct: 503 ALR-GNSIVDYIAKFGLSLPYGEH 571
>TC19596
Length = 499
Score = 68.9 bits (167), Expect = 1e-12
Identities = 41/150 (27%), Positives = 68/150 (45%)
Frame = +1
Query: 184 KCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRG 243
+ ++DG+ + + GG+ RD++G W+ GF + L AE+ + + L W+
Sbjct: 4 RMDSDGAFKHDDDRMGMGGIVRDAHGAWISGFYAGSLGGDALRAEIAALKHGLTLLWNAH 183
Query: 244 VPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADEL 303
V R E D V+ + H + IR DRDW + REAN+ AD L
Sbjct: 184 VRRATCEVDCLDIVEALENDRYQFHALASELLDIRLLLDRDWTVTLAYVPREANAAADCL 363
Query: 304 ANMAHDLDFGIHILDYPPPRVSNLLLFDVM 333
A + L + L+ PP + +L D++
Sbjct: 364 AGLGASLLCPLTCLESPPQELQPILARDLL 453
>AV411435
Length = 426
Score = 62.0 bits (149), Expect = 1e-10
Identities = 29/66 (43%), Positives = 33/66 (49%)
Frame = +3
Query: 7 WHHIWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCA 66
WH IW P KV +FLWR NN I V R M D CP+CN+ E I H L C
Sbjct: 168 WHTIWGAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACE 347
Query: 67 CVRPLW 72
R +W
Sbjct: 348 WTRAVW 365
>BP069214
Length = 545
Score = 59.7 bits (143), Expect = 7e-10
Identities = 33/104 (31%), Positives = 52/104 (49%)
Frame = -2
Query: 228 ELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDF 287
EL ++ + L WDRG +++ +SDS+ A+ L+ H Y +I I+ R+W+
Sbjct: 394 ELLAMWHGLDLVWDRGFRQVICQSDSTEALALVLGVPPPRHRYAALIWSIKDLLSREWEV 215
Query: 288 QCVHACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFD 331
H RE NS AD LA D + + P P ++ LL +D
Sbjct: 214 SMTHMLREGNSCADFLAKYGAMQDEPLVLPQEPLPGMTQLLFWD 83
>AV407204
Length = 432
Score = 57.4 bits (137), Expect = 3e-09
Identities = 41/131 (31%), Positives = 59/131 (44%), Gaps = 4/131 (3%)
Frame = -2
Query: 210 RWLFGFCRNL--GTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDV- 266
+W+ GF S AE + ++LAWD G +LV SD + I + S
Sbjct: 431 KWVNGFISQYLEAASCSFLAEALALRDGLRLAWDNGTRKLVCNSDCKELIDAIADPSRAS 252
Query: 267 LHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAHDLDF-GIHILDYPPPRVS 325
H +G ++ +I R+W + CR+ N VAD LA L G L P P +
Sbjct: 251 FHAHGWVLREIHALMTRNWRVELFWCCRDVNMVADCLAKRGSLLPVAGYSALATPSPELE 72
Query: 326 NLLLFDVMGGS 336
LLL D++G S
Sbjct: 71 VLLLKDIIGFS 39
>BP043532
Length = 465
Score = 57.0 bits (136), Expect = 4e-09
Identities = 26/86 (30%), Positives = 48/86 (55%)
Frame = -2
Query: 219 LGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIR 278
+G ++L AELWG+ ++ A RG ++++E+DS+ ++ +N+G V+HP ++ +
Sbjct: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
Query: 279 QWKDRDWDFQCVHACREANSVADELA 304
++ H RE N VAD A
Sbjct: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
>BP053073
Length = 456
Score = 57.0 bits (136), Expect = 4e-09
Identities = 36/116 (31%), Positives = 53/116 (45%)
Frame = -2
Query: 219 LGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIR 278
+G S +L EL + +QL W +GV R++V +DS +A+ L+ G D H Y ++ I
Sbjct: 443 VGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIVGMIH 264
Query: 279 QWKDRDWDFQCVHACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMG 334
DW RE N+V D LA + +L+ P LL D G
Sbjct: 263 DLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCG 96
>TC18883
Length = 821
Score = 54.7 bits (130), Expect = 2e-08
Identities = 35/109 (32%), Positives = 51/109 (46%)
Frame = +1
Query: 201 GGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLI 260
GG+ R+S L F +++G AE+W IF + + +R + L +ESDSS+AV +
Sbjct: 16 GGIFRNSDNEILGFFSKHVGEGFAFEAEVWAIFEALTICVNRQLRNLTIESDSSLAVGWV 195
Query: 261 NEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAHD 309
N S ++QI W H REAN D+LA D
Sbjct: 196 NNRSXRPWKLLNKLNQIDLWVAEVNCLSVKHIFREANGEVDKLAKRGAD 342
>BI418523
Length = 496
Score = 53.1 bits (126), Expect = 6e-08
Identities = 28/86 (32%), Positives = 46/86 (52%)
Frame = +1
Query: 175 WSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFS 234
WSPP ++KCN DG+ +G + GGV RD+ + L F N G A++ I +
Sbjct: 187 WSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRKILGYFSLNSGNGWAYEAKVRSILN 366
Query: 235 VIQLAWDRGVPRLVVESDSSVAVKLI 260
+ + +++ESDS+VAV+ +
Sbjct: 367 ALVFIQKFLLKNILIESDSTVAVEWV 444
>BP068806
Length = 418
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 16 PFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRPLWQQL 75
P K+ ++W ++ I VN R+R +A P C + E I H LRDC R +W +L
Sbjct: 153 PEKIRVWVWFIMQGAIQVNSFRFRCKLATSPAGPRCQHQFEDIWHCLRDCRIARDVWVRL 332
>BP066140
Length = 320
Score = 44.3 bits (103), Expect = 3e-05
Identities = 28/88 (31%), Positives = 42/88 (46%), Gaps = 1/88 (1%)
Frame = -2
Query: 236 IQLAWDRGVPRLVVESDSSVAVK-LINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACR 294
+ LAW+RG+ +L+ SD VK L GS L + +++ R +W+ + R
Sbjct: 313 LSLAWERGIRKLLCISDCEDVVKALTGLGSFHLDSWAAYLAEARSLIHPEWECLLLPHHR 134
Query: 295 EANSVADELANMAHDLDFGIHILDYPPP 322
E N AD LA + L L+ PPP
Sbjct: 133 ERNKPADALAKLGMSLRRDFPALENPPP 50
>TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%)
Length = 596
Score = 43.9 bits (102), Expect = 4e-05
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 175 WSPPPPAWVKCNTDGSVRGTSNLAACGGVC 204
W+PP WVK NTDGS S+L CGG+C
Sbjct: 107 WTPPSVGWVKLNTDGSFTRGSSLMGCGGLC 196
>AV428268
Length = 429
Score = 43.9 bits (102), Expect = 4e-05
Identities = 19/66 (28%), Positives = 32/66 (47%)
Frame = +3
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
+W P W+VL N + R G+ + ++CPLC+ + E+ HLL C V
Sbjct: 78 LWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVISNVCPLCSLDEESTDHLLFSCPIV* 257
Query: 70 PLWQQL 75
+W ++
Sbjct: 258 RIWSKI 275
>BP052213
Length = 375
Score = 40.0 bits (92), Expect(2) = 7e-05
Identities = 16/24 (66%), Positives = 21/24 (86%)
Frame = -3
Query: 297 NSVADELANMAHDLDFGIHILDYP 320
N VADELA++AH L+ GIH+LD+P
Sbjct: 259 NQVADELASIAHGLELGIHVLDHP 188
Score = 22.3 bits (46), Expect(2) = 7e-05
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 322 PRVSNLLLFDVMGGSLPR 339
P S LLLFDV S PR
Sbjct: 185 PGCSKLLLFDVSRVSFPR 132
>TC11323
Length = 657
Score = 42.7 bits (99), Expect = 9e-05
Identities = 26/90 (28%), Positives = 38/90 (41%)
Frame = +2
Query: 175 WSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFS 234
W P K N DGS G A GG+ RD ++FGF L + ++ L I
Sbjct: 5 WLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILE 184
Query: 235 VIQLAWDRGVPRLVVESDSSVAVKLINEGS 264
+ + G + +E DS++ V I S
Sbjct: 185 GLLVCKPLGYDGIGIECDSNIVVSWIRSRS 274
>AV412895
Length = 405
Score = 42.7 bits (99), Expect = 9e-05
Identities = 24/68 (35%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Frame = +1
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVN---YRRWRAGMALDSLCPLCNEESETIIHLLRDCA 66
IW P + F+WRVL I +R ALD++CPLC E+ HLL CA
Sbjct: 82 IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCA 261
Query: 67 CVRPLWQQ 74
+W +
Sbjct: 262 ESMLIWYE 285
>BP076564
Length = 371
Score = 42.7 bits (99), Expect = 9e-05
Identities = 29/99 (29%), Positives = 44/99 (44%)
Frame = +2
Query: 27 LNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRPLWQQLVPGHLFQAFIA 86
L+ + +N RR MA C C+ + I+H L+DC R +W +L F F++
Sbjct: 98 LHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVWNRLGCSS-FGGFLS 274
Query: 87 SDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRS 125
SD WLL ++ V +LW IW R+
Sbjct: 275 SDGWSWLLSIMKQP--------NVEKLIYILWWIWR*RN 367
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.141 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,335,007
Number of Sequences: 28460
Number of extensions: 176132
Number of successful extensions: 1268
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of query: 342
length of database: 4,897,600
effective HSP length: 91
effective length of query: 251
effective length of database: 2,307,740
effective search space: 579242740
effective search space used: 579242740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0045.13