BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.10
(257 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11802 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, pa... 302 3e-83
TC16718 140 2e-34
AV770004 28 1.2
AV411486 26 1.5
TC10344 28 1.6
BP062373 27 3.5
TC17038 homologue to UP|ACT1_SORBI (P53504) Actin 1, partial (63%) 27 3.5
TC10786 weakly similar to UP|Q9FMM3 (Q9FMM3) Gb|AAC80623.1, part... 27 3.5
TC11078 similar to UP|Q40451 (Q40451) DNA-binding protein, parti... 27 3.5
TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%) 27 4.5
TC15758 similar to UP|O23275 (O23275) Transport protein, partial... 27 4.5
TC15613 similar to UP|Q8S9K2 (Q8S9K2) At1g75460/F1B16_22, partia... 26 5.9
TC9620 similar to UP|Q9ZNX1 (Q9ZNX1) NAD-dependent isocitrate de... 26 5.9
TC11487 weakly similar to UP|Q8LAY3 (Q8LAY3) Inhibitor of apopto... 26 5.9
BP084209 26 5.9
TC13693 similar to PIR|T00933|T00933 RNA-binding protein homolog... 26 7.7
>TC11802 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial (19%)
Length = 515
Score = 302 bits (774), Expect = 3e-83
Identities = 143/143 (100%), Positives = 143/143 (100%)
Frame = +2
Query: 1 MASAFFSKVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHEVTLKMFDDLIQRI 60
MASAFFSKVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHEVTLKMFDDLIQRI
Sbjct: 86 MASAFFSKVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHEVTLKMFDDLIQRI 265
Query: 61 LVKKATPDWLPFLPGYSFWVPPRPSPSSVVHLAHRFNSSDQPQDALNLESHHGWPDPNYF 120
LVKKATPDWLPFLPGYSFWVPPRPSPSSVVHLAHRFNSSDQPQDALNLESHHGWPDPNYF
Sbjct: 266 LVKKATPDWLPFLPGYSFWVPPRPSPSSVVHLAHRFNSSDQPQDALNLESHHGWPDPNYF 445
Query: 121 LQGNAPAHSGESGVELNLPEEGT 143
LQGNAPAHSGESGVELNLPEEGT
Sbjct: 446 LQGNAPAHSGESGVELNLPEEGT 514
>TC16718
Length = 464
Score = 140 bits (353), Expect = 2e-34
Identities = 69/75 (92%), Positives = 71/75 (94%)
Frame = +1
Query: 183 IFMVQPKLMEKSKNTKGKNRGGDREGQFVQMEIPADTALVVVVELTLLTLHGLNFGFSFK 242
IFMV PKLMEKS+N +GKNRGGDREG FV MEIPADTALVVVVELTLLTLHGLNFGFSFK
Sbjct: 40 IFMVPPKLMEKSQNPQGKNRGGDREGPFVPMEIPADTALVVVVELTLLTLHGLNFGFSFK 219
Query: 243 PVYVEYLQRCYVESL 257
PVYVEYLQRCYVESL
Sbjct: 220 PVYVEYLQRCYVESL 264
>AV770004
Length = 248
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 72 FLPGYSFWVPPRPSPSSVVHL 92
F PGY WVPP + S +HL
Sbjct: 120 FCPGY*IWVPPLVNSKSCLHL 58
>AV411486
Length = 419
Score = 25.8 bits (55), Expect(2) = 1.5
Identities = 14/51 (27%), Positives = 23/51 (44%), Gaps = 5/51 (9%)
Frame = +3
Query: 67 PDWLPF-----LPGYSFWVPPRPSPSSVVHLAHRFNSSDQPQDALNLESHH 112
PD PF + G++ +PPRP +++ + + Q Q L HH
Sbjct: 186 PDKNPFTLLSPMEGFTLPLPPRPHTTTLQWMEQQQQQQQQQQQQLVEAKHH 338
Score = 20.8 bits (42), Expect(2) = 1.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 112 HGWPDPNYFLQGNA 125
HGW P+ FLQ +A
Sbjct: 365 HGWWYPSSFLQTHA 406
>TC10344
Length = 616
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +1
Query: 7 SKVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEH------EVTLKMFDDLIQRI 60
S++ PL P+ S ++ + SS+ TKA E+ A+ E LK +D I R
Sbjct: 328 SRLSPLSPEPYESGATIDI--PLDSSKDTKAKEKELQAKESELKRREQELKRREDAIARA 501
Query: 61 LVKKATPDWLPFLP 74
+ +W PF P
Sbjct: 502 GIVIEEKNWPPFFP 543
>BP062373
Length = 384
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -3
Query: 112 HGWPDPNYFLQG 123
HGWP P YF +G
Sbjct: 232 HGWPSPTYFCKG 197
>TC17038 homologue to UP|ACT1_SORBI (P53504) Actin 1, partial (63%)
Length = 761
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Frame = -1
Query: 76 YSFWVPPRPS---PSSVVHLAHRFNSSDQPQDALNLESHH 112
Y FW P P PS +HR + DQ L HH
Sbjct: 248 YLFWTVPHPQHRHPSGPCQPSHRCDEDDQQCWETQLAGHH 129
>TC10786 weakly similar to UP|Q9FMM3 (Q9FMM3) Gb|AAC80623.1, partial (9%)
Length = 756
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/38 (31%), Positives = 18/38 (46%)
Frame = -3
Query: 102 PQDALNLESHHGWPDPNYFLQGNAPAHSGESGVELNLP 139
P + + +PDP G +H GESG+ L+ P
Sbjct: 283 PYGGIEITLFPTFPDPGLLSTGFGRSHCGESGIGLSEP 170
>TC11078 similar to UP|Q40451 (Q40451) DNA-binding protein, partial (16%)
Length = 507
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = +3
Query: 77 SFWVPPRPSPSSVVHLAHRFNSSDQPQDALNLESHHGWPDPNYFLQGNAPAH 128
S WVPP P P + V Q+A+N H PD N + +APA+
Sbjct: 81 SIWVPPPPPPPTAVPFT---------QEAIN----HA-PDSNIPINSSAPAN 194
>TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%)
Length = 591
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 73 LPGYSFWVPPRPSPS 87
+PG+S W PPR +PS
Sbjct: 357 IPGHSCWTPPR*TPS 313
>TC15758 similar to UP|O23275 (O23275) Transport protein, partial (8%)
Length = 797
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 72 FLPGYSFWVPPRPSPSSVVHL 92
F PGY FWVP + S +HL
Sbjct: 556 FCPGY*FWVPHLVNSYSCLHL 618
>TC15613 similar to UP|Q8S9K2 (Q8S9K2) At1g75460/F1B16_22, partial (30%)
Length = 491
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/47 (31%), Positives = 22/47 (45%), Gaps = 3/47 (6%)
Frame = +3
Query: 15 NP-FPSSNSMAVCHRHRSSRATKAT--LTEIDAEHEVTLKMFDDLIQ 58
NP FPSS++ V H HR R T + +H DD+++
Sbjct: 159 NPNFPSSSTTHVLHHHRRRRGGNLTCSASSFSEKHHTDSPRSDDVVE 299
>TC9620 similar to UP|Q9ZNX1 (Q9ZNX1) NAD-dependent isocitrate
dehydrogenase precursor , partial (41%)
Length = 947
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 15 NPFPSSNSMAVCHRHRSSRATKA 37
NP P + CH HR+SR+T A
Sbjct: 374 NPKPPPAPPSSCHGHRTSRSTPA 306
>TC11487 weakly similar to UP|Q8LAY3 (Q8LAY3) Inhibitor of apoptosis-like
protein, partial (13%)
Length = 705
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 81 PPRPSPSSVVHLAHRFNSSDQPQDALNLESHHGW 114
PP PSPSSV R ++S++ ++L H+GW
Sbjct: 501 PPHPSPSSVKTFPFR-STSNKSTSIISL--HNGW 593
>BP084209
Length = 502
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/58 (25%), Positives = 27/58 (45%), Gaps = 8/58 (13%)
Frame = -3
Query: 160 GKRIVNYQLCRSMNYEE--------HKTPKGIFMVQPKLMEKSKNTKGKNRGGDREGQ 209
G R + + S Y+E ++ +G+ V+PK + N +G+ RGG G+
Sbjct: 500 GSRQITFTSRSSARYKEDDDDDEMPNRKRRGVQSVEPKPHRSNFNGRGRGRGGRGRGR 327
>TC13693 similar to PIR|T00933|T00933 RNA-binding protein homolog At2g42240
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(53%)
Length = 662
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 71 PFLPGYSFWVPPRPSPSSVVHLAHRFNSSDQPQDALNLESHHGWPDPNYFLQGNAPAHSG 130
P L YS++ PP P P V PQ + H P N F +P H
Sbjct: 27 PALLNYSYYQPPPPPPIMTVVPPPPGTVFPHPQ---YVPHHQQQPLYNSFALPQSPTHEV 197
Query: 131 ESGVELNLPEE 141
+ LPE+
Sbjct: 198 RTLFVAGLPED 230
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,802,375
Number of Sequences: 28460
Number of extensions: 71189
Number of successful extensions: 503
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of query: 257
length of database: 4,897,600
effective HSP length: 88
effective length of query: 169
effective length of database: 2,393,120
effective search space: 404437280
effective search space used: 404437280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0045.10