BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0044b.3
(242 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP037461 350 2e-97
TC9164 weakly similar to UP|Q84MJ0 (Q84MJ0) MADS4 (Fragment), pa... 156 3e-39
TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, part... 154 1e-38
TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%) 106 1e-34
TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, pa... 105 7e-24
AU251498 89 7e-19
AU252010 86 6e-18
TC17763 similar to UP|Q7Y1U9 (Q7Y1U9) SVP-like floral repressor,... 84 3e-17
AV421179 79 9e-16
BP064158 74 2e-14
TC11647 similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62, pa... 71 2e-13
BP045263 68 2e-12
TC13748 similar to UP|Q39401 (Q39401) MADS5 protein, partial (28%) 45 9e-06
AU089354 45 9e-06
TC19566 similar to UP|O82084 (O82084) MADS-box protein 1, partia... 36 0.005
TC12138 similar to GB|AAP81806.1|32441262|BT009688 At5g46840 {Ar... 29 0.64
AV774621 27 3.2
TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like... 27 4.1
BP081294 27 4.1
TC9275 similar to UP|Q9M4A9 (Q9M4A9) Beta-1,3 glucanase precurso... 26 7.0
>BP037461
Length = 551
Score = 350 bits (897), Expect = 2e-97
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +2
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 8 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 187
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP
Sbjct: 188 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 367
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNS 180
LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNS
Sbjct: 368 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNS 547
Query: 181 L 181
L
Sbjct: 548 L 550
>TC9164 weakly similar to UP|Q84MJ0 (Q84MJ0) MADS4 (Fragment), partial
(42%)
Length = 596
Score = 156 bits (395), Expect = 3e-39
Identities = 70/72 (97%), Positives = 72/72 (99%)
Frame = +1
Query: 171 QRLEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGP 230
++LEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGP
Sbjct: 1 RQLEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGP 180
Query: 231 SMNNNYMAGWLP 242
SMNNNYMAGWLP
Sbjct: 181 SMNNNYMAGWLP 216
>TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, partial (45%)
Length = 970
Score = 154 bits (389), Expect = 1e-38
Identities = 76/86 (88%), Positives = 80/86 (92%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS RGKLYEFCSS
Sbjct: 276 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSS 455
Query: 61 SSMLKTLERYQKCNYGAPEANVSTRE 86
SSM+KTLERYQKC+YGA E N +E
Sbjct: 456 SSMVKTLERYQKCSYGAVEVNKPAKE 533
Score = 34.3 bits (77), Expect = 0.020
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 91 SSQQEYLKLKARYEALQRSQR 111
SS +EYLKLK R+E+LQR+QR
Sbjct: 658 SSYREYLKLKGRFESLQRTQR 720
>TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%)
Length = 1060
Score = 106 bits (264), Expect(2) = 1e-34
Identities = 68/209 (32%), Positives = 116/209 (54%), Gaps = 9/209 (4%)
Frame = +3
Query: 39 CDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLK 98
CDAEVALI+FS+RG+LYE+ +++S+ T++RY+K + A S EA QQE K
Sbjct: 93 CDAEVALIVFSSRGRLYEY-ANNSVKATIDRYKKACSDSSGAG-SASEANAQFYQQEADK 266
Query: 99 LKARYEALQRSQRNLMGEDLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRK 158
L+ + LQ + R +MGE LG +N+KEL++LE +L+ + +IRS + + + ++ +Q++
Sbjct: 267 LRVQISNLQNNNRQMMGESLGSMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKR 446
Query: 159 EHMLSEANRSLRQRLEGYQLNSLQLN------PGVEDMGYGRHPAQTHGDA--FYHPIEC 210
E L N+ LR ++ + N L+ E M + Q D+ ++
Sbjct: 447 EIDLHNNNQLLRAKIAESERNHPNLSILAGSTSNYESMQSQQQQQQQQFDSRGYFQVTGL 626
Query: 211 EPTLQIGY-QPDPVSVVTAGPSMNNNYMA 238
+PT Y +PDP+S+ P ++M+
Sbjct: 627 QPTTHTPYSRPDPISLPPRSPYARQDHMS 713
Score = 55.8 bits (133), Expect(2) = 1e-34
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 8 LKRIENKINRQVTFAKRRNGLLKKAYELSVL 38
+KRIEN NRQVTF KRRNGLLKKAYELSVL
Sbjct: 1 IKRIENTTNRQVTFCKRRNGLLKKAYELSVL 93
>TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, partial
(58%)
Length = 1100
Score = 105 bits (262), Expect = 7e-24
Identities = 67/177 (37%), Positives = 104/177 (57%), Gaps = 3/177 (1%)
Frame = +2
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRG++E+K IEN NRQVT++KRRNG+ KKA+ELSVLCDA+V+LI+FS K++E+ S
Sbjct: 137 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISP 316
Query: 61 SSMLK-TLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGE--D 117
K +++YQK G + S E + + KLK L+R R+ +GE D
Sbjct: 317 GLTTKRIIDQYQK-TLGDIDLWRSHYEKM----LENLKKLKEINNKLRRQIRHRLGEGLD 481
Query: 118 LGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLE 174
+ L+ ++L LE + SS+ +IR + + + ++K L + N +L L+
Sbjct: 482 MDDLSFQQLRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELK 652
>AU251498
Length = 342
Score = 89.0 bits (219), Expect = 7e-19
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSN 50
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+
Sbjct: 45 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSS 194
>AU252010
Length = 328
Score = 85.9 bits (211), Expect = 6e-18
Identities = 48/115 (41%), Positives = 74/115 (63%), Gaps = 1/115 (0%)
Frame = +1
Query: 12 ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERY 70
EN NRQVT++KR+NG+LKKA E++VLCDA+V+LIIF+ GK++++ S S++++ LERY
Sbjct: 1 ENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLVDMLERY 180
Query: 71 QKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLNSKE 125
K + +A + E +LK + +Q R+L G+D+ LN KE
Sbjct: 181 HK------TSGKRLWDAKHENLNGEIERLKKENDGMQIELRHLKGDDINSLNYKE 327
>TC17763 similar to UP|Q7Y1U9 (Q7Y1U9) SVP-like floral repressor, partial
(35%)
Length = 737
Score = 83.6 bits (205), Expect = 3e-17
Identities = 41/70 (58%), Positives = 57/70 (80%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
M R ++++K+I+N RQVTF+KRR GL KKA ELSVLCDA+VAL++FS+ GKL+E+ S+
Sbjct: 501 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALVVFSSTGKLFEY-SN 677
Query: 61 SSMLKTLERY 70
SM + LER+
Sbjct: 678 LSMKEILERH 707
>AV421179
Length = 207
Score = 78.6 bits (192), Expect = 9e-16
Identities = 37/61 (60%), Positives = 49/61 (79%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
M R R+++K+I+N +RQVTF+KRR GL KKA ELS LCDA++ALI+FS KL+E+ SS
Sbjct: 6 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATNKLFEYASS 185
Query: 61 S 61
S
Sbjct: 186S 188
>BP064158
Length = 394
Score = 73.9 bits (180), Expect = 2e-14
Identities = 36/67 (53%), Positives = 50/67 (73%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGR +++ +++EN NRQVTF+KRRNGL+KKAYELSVLC +VALI+FS G+ F +
Sbjct: 165 MGRVKLQNQKVENTTNRQVTFSKRRNGLIKKAYELSVLCXFDVALIMFSPSGRACLFSGN 344
Query: 61 SSMLKTL 67
++ L
Sbjct: 345 RRLIGEL 365
>TC11647 similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62, partial (25%)
Length = 843
Score = 70.9 bits (172), Expect = 2e-13
Identities = 44/125 (35%), Positives = 70/125 (55%), Gaps = 3/125 (2%)
Frame = +1
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
+GR ++E+K++ N+ N QVTF+KRR+GL KKA EL +LCD E+AL++FS K++ F
Sbjct: 85 LGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCILCDVEIALVVFSPGEKVFSF-GH 261
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQR---SQRNLMGED 117
S+ ++RY AP T + +E + +L + + RN GE+
Sbjct: 262 PSVEAVIKRYFS---QAPPQTSDTMQYIEAQRNSKVHELNVELSQINNLLDTVRN-HGEE 429
Query: 118 LGPLN 122
L L+
Sbjct: 430 LNRLH 444
>BP045263
Length = 535
Score = 67.8 bits (164), Expect = 2e-12
Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Frame = -1
Query: 147 FMLDQLSDLQRKEHMLSEANRSLRQRLEG------YQLNSLQLNPGVEDMGYGRHPAQTH 200
FMLDQLSDLQ KE ML EANRSL +L+ Y+L+ Q G M YG P H
Sbjct: 535 FMLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRLSWDQ--AGDPSMQYGGSP-NAH 365
Query: 201 GDAFYHPIECEPTLQI-------GYQPDPVSVVTAGPSMNNNYMAGWL 241
F+ P+EC PTLQI G D ++ T + N ++ GW+
Sbjct: 364 SQGFFQPLECNPTLQIGSDYRYHGVASDQMAATTQAQPV-NGFIPGWM 224
>TC13748 similar to UP|Q39401 (Q39401) MADS5 protein, partial (28%)
Length = 624
Score = 45.4 bits (106), Expect = 9e-06
Identities = 20/47 (42%), Positives = 34/47 (71%)
Frame = +1
Query: 128 SLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLE 174
+LE+QLDS+LK IRS + Q + + +S+LQ+K+ L E N L ++++
Sbjct: 1 NLEQQLDSALKHIRSRKNQALFESISELQKKDKALQEQNNLLTKKIK 141
>AU089354
Length = 178
Score = 45.4 bits (106), Expect = 9e-06
Identities = 22/47 (46%), Positives = 35/47 (73%), Gaps = 1/47 (2%)
Frame = +3
Query: 27 GLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQK 72
G+LKKA E++VLC A+V+LI F+ GK++++ S + ++ LERY K
Sbjct: 3 GILKKAIEITVLCXAQVSLIXFAASGKMHDYIRPSITXVEMLERYXK 143
>TC19566 similar to UP|O82084 (O82084) MADS-box protein 1, partial (17%)
Length = 531
Score = 36.2 bits (82), Expect = 0.005
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 186 GVEDMGYGRHPAQTHGDAFYHPIECEPTLQIG 217
G M YG P H F+ P+EC PTLQIG
Sbjct: 29 GDRSMQYGGSP-NAHSQGFFQPLECNPTLQIG 121
>TC12138 similar to GB|AAP81806.1|32441262|BT009688 At5g46840 {Arabidopsis
thaliana;}, partial (45%)
Length = 874
Score = 29.3 bits (64), Expect = 0.64
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +2
Query: 53 KLYE-FCSSSSMLKTLE-----RYQKCNYGAPEANV--STREALELSSQQEYLKLKARYE 104
+LY+ FC ++ ++E R N G A V TREA + ++ YLKL+ R
Sbjct: 473 ELYQLFCGIHNLSSSIEAVRVVRDPHLNVGKGIAYVLFKTREAANFAVKRRYLKLRDREL 652
Query: 105 ALQRSQRNLMGEDLGPLNSKELESLERQLDSSLKQIRST 143
L ++ + SK LE+ ++ +SS Q ST
Sbjct: 653 RLSHAKADATPSKRLNTPSKRLETPSKRPNSSPAQAPST 769
>AV774621
Length = 356
Score = 26.9 bits (58), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = -3
Query: 220 PDPVSVVTAGPSMNNNYMAGWL 241
PDP V A P+++N + GW+
Sbjct: 270 PDPEPVTIADPNISNGFELGWI 205
>TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(52%)
Length = 765
Score = 26.6 bits (57), Expect = 4.1
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -3
Query: 2 GRGRVELKRIENKINR--QVTFAKR 24
GRGRVE RI +NR QVTF R
Sbjct: 454 GRGRVERNRICQALNRLLQVTFRNR 380
>BP081294
Length = 388
Score = 26.6 bits (57), Expect = 4.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 37 VLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYG 76
VLC E +FS G + F + S+ +T + CN G
Sbjct: 385 VLCVCEYITAVFSGGGGVSRFNAPRSLTQTRKLIMSCNRG 266
>TC9275 similar to UP|Q9M4A9 (Q9M4A9) Beta-1,3 glucanase precursor ,
partial (39%)
Length = 545
Score = 25.8 bits (55), Expect = 7.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 198 QTHGDAFYHPIECEPTLQIGY 218
Q HG +YHP E EP Q GY
Sbjct: 373 QGHGSCWYHPNE-EPRYQQGY 314
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,546,364
Number of Sequences: 28460
Number of extensions: 42550
Number of successful extensions: 182
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of query: 242
length of database: 4,897,600
effective HSP length: 88
effective length of query: 154
effective length of database: 2,393,120
effective search space: 368540480
effective search space used: 368540480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0044b.3