BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0044b.1
(221 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU088929 31 0.15
TC18079 weakly similar to UP|UFO5_MANES (Q40287) Flavonol 3-O-gl... 31 0.15
BI418736 29 0.56
BP055954 29 0.73
TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-... 24 1.4
TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcri... 28 1.6
TC10723 similar to GB|AAB61117.1|2194142|F20P5 ESTs gb|N38288,gb... 27 2.8
BP083927 27 3.6
TC9025 similar to PIR|F86282|F86282 protein F10B6.30 [imported] ... 26 6.2
AV421229 25 8.1
AV418706 25 8.1
TC18782 similar to UP|Q8LCU7 (Q8LCU7) Nuclear receptor binding f... 25 8.1
AV767558 25 8.1
BP041245 25 8.1
TC12797 similar to UP|O80799 (O80799) T8F5.5 protein, partial (5%) 25 8.1
BP050982 25 8.1
>AU088929
Length = 720
Score = 31.2 bits (69), Expect = 0.15
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 170 ANRSSHGSRIPPRHRASPTHSQCVFVWHSEHEVQT 204
+ R SH ++ P H P SQ VF+WH HE +
Sbjct: 375 STRGSHSYKLVPCHGRHP--SQLVFLWHRGHEASS 277
>TC18079 weakly similar to UP|UFO5_MANES (Q40287) Flavonol
3-O-glucosyltransferase 5 (UDP-glucose flavonoid
3-O-glucosyltransferase 5) , partial (33%)
Length = 889
Score = 31.2 bits (69), Expect = 0.15
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Frame = -2
Query: 98 PIATFYCQPPKILPETQVRYATRPIMLWFLSLFVDASVSQLEGVC-SENTHFKGARDTHL 156
P + +PP + P Q T LS + G ++N++ K +++
Sbjct: 537 PYTQLHPRPPSLAPPLQAPPTTCKRSFSALSTRATPPWAHRSGHSPTQNSNHKASQNHLW 358
Query: 157 KDMPRTKNLNL---PPANRSSHGSRIPPRHRASPTHSQCVFVWHS 198
+D PR++ + PP S PP ++P HS+ WHS
Sbjct: 357 QDAPRSQPVGPT*GPPHQTHVSCS*TPPASNSTPFHSRIQKTWHS 223
>BI418736
Length = 544
Score = 29.3 bits (64), Expect = 0.56
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 158 DMPRTKNLNLPPANRSSHGSRIPPRHRASPTHSQCVFV 195
++PR ++L+LPP R H PRHR TH Q F+
Sbjct: 201 NLPR-RHLHLPPPTRPPHNLHRQPRHRT--THPQDPFL 305
>BP055954
Length = 518
Score = 28.9 bits (63), Expect = 0.73
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 57 SSILKERSLRIHVIYRMNQRRKHNGDPANTATP 89
+ +L+ER H + R QRR+H PAN A P
Sbjct: 498 AGVLRERH---HFLQRRRQRRRHRRVPANRARP 409
>TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-like
protein, partial (83%)
Length = 1784
Score = 23.9 bits (50), Expect(2) = 1.4
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Frame = +2
Query: 89 PQPSGVAATPIATFYCQPPKILPE----TQVRYATRP 121
P+ +A P ATF PP P+ T Y T P
Sbjct: 281 PESESSSAPPTATFQISPPIPTPQFSG*TPTSYPTTP 391
Score = 22.3 bits (46), Expect(2) = 1.4
Identities = 11/34 (32%), Positives = 17/34 (49%)
Frame = +3
Query: 159 MPRTKNLNLPPANRSSHGSRIPPRHRASPTHSQC 192
+PR ++ + R +H R PR A P S+C
Sbjct: 384 LPRQQHHSHHRRQRGTHLRRPQPRLAAGPGDSEC 485
>TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcription
factor 49 (WRKY DNA-binding protein 49), partial (28%)
Length = 1009
Score = 27.7 bits (60), Expect = 1.6
Identities = 20/75 (26%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
Frame = +1
Query: 56 RSSILKE--RSLRI---HVIYRMNQRRKHNGDPANTATPQPSGVAATPIATFYCQPPKIL 110
R S LK+ R+LR+ H+ + H AN + P P+ + +P + P+
Sbjct: 430 RRSRLKDPMRTLRLLSSHMKGSTSTLHTHASWWANHSNPSPTHQSRSPSLPLHKSKPRPK 609
Query: 111 PETQVRYATRPIMLW 125
P T +P++LW
Sbjct: 610 PRTS*STKPKPVLLW 654
>TC10723 similar to GB|AAB61117.1|2194142|F20P5 ESTs
gb|N38288,gb|T43486,gb|AA395242 come from this gene.
{Arabidopsis thaliana;}, partial (49%)
Length = 1008
Score = 26.9 bits (58), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 181 PRHRASPTHSQCVFVWHSEHEVQTATVTQFKNAFK 215
P R PTH C W+S+ + +T T + F+
Sbjct: 942 PLQRTQPTHQNCSKTWNSQQIKKCSTFTCKQQEFQ 838
>BP083927
Length = 368
Score = 26.6 bits (57), Expect = 3.6
Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 5/43 (11%)
Frame = +2
Query: 150 GARDTHLKDMPRTKNLNLP---PANRSSH--GSRIPPRHRASP 187
GAR+THL + P LP N S H G + P H A P
Sbjct: 218 GARNTHLSNAPPNMPFPLPGQNMVNNSLHFLGGALRPLHPARP 346
>TC9025 similar to PIR|F86282|F86282 protein F10B6.30 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(55%)
Length = 991
Score = 25.8 bits (55), Expect = 6.2
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 83 PANTATPQPSGVAATPIAT-FYCQPPKILPETQ 114
PA TATP S ATP T Y PP + Q
Sbjct: 104 PAPTATPISSAQVATPHCTQTYATPPSLATPMQ 202
>AV421229
Length = 262
Score = 25.4 bits (54), Expect = 8.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 168 PPANRSSHGSRIPPRHRASPTHS 190
P ANRS G R P H SP+ S
Sbjct: 126 PEANRSIRGPRETPPHSPSPSGS 194
>AV418706
Length = 374
Score = 25.4 bits (54), Expect = 8.1
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Frame = +3
Query: 164 NLNLPPANRSSHGSR--------IPPRHRASPTHSQCVFVW 196
N++LPP HG PPR R+S + +F W
Sbjct: 57 NISLPPTKSQLHGPNRPTYRPRAAPPRRRSSNSCCCTLFCW 179
>TC18782 similar to UP|Q8LCU7 (Q8LCU7) Nuclear receptor binding factor-like
protein, partial (57%)
Length = 832
Score = 25.4 bits (54), Expect = 8.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 189 HSQCVFVWHSEHEVQT 204
HS C WHS+H+ T
Sbjct: 131 HSACKISWHSQHQYYT 178
>AV767558
Length = 312
Score = 25.4 bits (54), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = +3
Query: 163 KNLNLPPANRSSHGSRIPPRHRASPTHS 190
K + PPA+ + H +R P R S TH+
Sbjct: 126 KGMLPPPASSTKHAARPPATCRKSQTHT 209
>BP041245
Length = 516
Score = 25.4 bits (54), Expect = 8.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 154 THLKDMPRTKNLNLPPANRSSHGSRIPPR 182
THL+ +P T++ NLPP +SH PPR
Sbjct: 504 THLR-IPHTRS-NLPPIAMTSHTLLQPPR 424
>TC12797 similar to UP|O80799 (O80799) T8F5.5 protein, partial (5%)
Length = 713
Score = 25.4 bits (54), Expect = 8.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 39 QYVLCFTCSEFNIFLCTRSSILKERSLRIH 68
Q+ CF + F C R K SLRIH
Sbjct: 205 QFSFCFETELRSFFFCDRERRRKPDSLRIH 116
>BP050982
Length = 487
Score = 25.4 bits (54), Expect = 8.1
Identities = 8/36 (22%), Positives = 21/36 (58%)
Frame = -1
Query: 21 VSDAQLNIIPKELQISNRQYVLCFTCSEFNIFLCTR 56
++ + ++PK + NR ++ TC++ + +CT+
Sbjct: 277 IAQPSMFVVPKLIVEVNRSHMSLITCNQDSSLMCTK 170
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,587,695
Number of Sequences: 28460
Number of extensions: 76959
Number of successful extensions: 546
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of query: 221
length of database: 4,897,600
effective HSP length: 87
effective length of query: 134
effective length of database: 2,421,580
effective search space: 324491720
effective search space used: 324491720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0044b.1