BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0044a.9
(464 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP030795 70 1e-12
AV409748 47 7e-06
TC16422 similar to PIR|T05653|T05653 amino acid transport protei... 40 6e-04
BF177486 34 0.059
BI418749 32 0.17
BP057409 31 0.38
TC9964 29 1.4
TC16435 UP|Q9UMR7 (Q9UMR7) Dendritic cell immunoreceptor, partia... 28 2.5
TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%) 28 3.2
TC14210 similar to PIR|A84668|A84668 Argonaute (AGO1)-like prote... 28 3.2
TC9745 similar to UP|V727_ARATH (Q9M376) Vesicle-associated memb... 28 4.2
BP063059 27 5.5
TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like... 27 5.5
TC14217 27 5.5
TC17041 homologue to GB|AAL25568.1|16648753|AY058152 AT5g16150/T... 27 7.2
TC19453 weakly similar to UP|O22613 (O22613) Plasma membrane pro... 27 7.2
TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like... 27 9.3
TC15198 similar to UP|IF35_ARATH (O04202) Eukaryotic translation... 27 9.3
TC15744 homologue to UP|Q00508 (Q00508) Ribosomal protein L41 (R... 27 9.3
>BP030795
Length = 492
Score = 69.7 bits (169), Expect = 1e-12
Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = -3
Query: 331 TKIALWATVLTPMTKYALEFAPVAIQLEHKLPSSMSGRTKMILRGIIGSSLLLVILALAL 390
++IA++ T++ P++KY L P+ L+ LP + + I I+ + L++ + +AL
Sbjct: 487 SRIAIYTTLVNPISKYVLMTTPITNALKDLLPRGYNSKVTDI---IVSAILVMSTVIVAL 317
Query: 391 TVPYFEHVLSLTGSLVSVAISLIFPCAFYIKI-CRGQISKPLFVLNISIITFGFLLGVVG 449
VP+F +++SL G+L+SV S++ PC Y+KI C + + + I+ G +G+ G
Sbjct: 316 AVPFFGYLMSLVGALLSVTASILLPCLCYLKISCNYNKFRFETITIVVILLSGIAIGMSG 137
Query: 450 TISSSKLLV 458
T S +V
Sbjct: 136 TYMSLNKIV 110
>AV409748
Length = 417
Score = 47.0 bits (110), Expect = 7e-06
Identities = 37/129 (28%), Positives = 60/129 (45%), Gaps = 4/129 (3%)
Frame = +2
Query: 52 IEESAVARDTNVDAEHDAK----ANSSLAHSVMNMVGMLIGLGQLSTPYAVEQGGWASAI 107
+E + + + D + D K A +S SV N+ +IG G ++ P A++ G A+ I
Sbjct: 20 VESPLLTSNKDDDDDDDEKNLRGAAASFTGSVFNLSTTIIGAGIMALPAAIKVLGVAAGI 199
Query: 108 LLIALGVMCTYTCHLLGKCLKKNPKLRSYVDIGNHAFGAKGRFLAAILIYMDIFMSLVSY 167
I T T + + RSY D+ +AFG GR + I + ++ F LV Y
Sbjct: 200 AAIIFLAFLTETSLDILMRFSRVGNARSYGDVMGYAFGWVGRLVLQISVLINNFGILVVY 379
Query: 168 TISLHDNLT 176
I + D L+
Sbjct: 380 VIIIGDVLS 406
>TC16422 similar to PIR|T05653|T05653 amino acid transport protein homolog
F22I13.20 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (38%)
Length = 685
Score = 40.4 bits (93), Expect = 6e-04
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Frame = +2
Query: 73 SSLAHSVMNMVGMLIGLGQLSTPYAVEQGGWASAILLIALGVMCTYTCHLLGKCLKKN-- 130
SS + N+ ++G G L PY ++ GW + ++++ TY C +L ++
Sbjct: 182 SSKFKTFANIFISIVGAGVLGLPYCFKRTGWLTGLIMLFTVAFLTYHCMMLLVSTRRKLD 361
Query: 131 -----PKLRSYVDIGNHAFGAKGRFLAAILIYMDIFMSLVSYTISLHDNL 175
KL S+ D+G G GR +I + VSY I + L
Sbjct: 362 SLTGYSKLGSFGDLGFAICGPLGRLAVDAMIVLSQAGFCVSYLIFIATTL 511
>BF177486
Length = 333
Score = 33.9 bits (76), Expect = 0.059
Identities = 22/106 (20%), Positives = 43/106 (39%)
Frame = +1
Query: 352 PVAIQLEHKLPSSMSGRTKMILRGIIGSSLLLVILALALTVPYFEHVLSLTGSLVSVAIS 411
PV +E + + + ILR I+ + + + LA+T P+F +L G +
Sbjct: 16 PVFDMIETVMVKKLHFKPTRILRFIVRNLYVAFTMFLAITFPFFGGLLGFFGGFAFAPTT 195
Query: 412 LIFPCAFYIKICRGQISKPLFVLNISIITFGFLLGVVGTISSSKLL 457
PC ++ I + + + N I G L ++ I + +
Sbjct: 196 YFLPCVMWLAIKKPRKYSLSWCTNWICIVLGLCLMILSPIGGLRTI 333
>BI418749
Length = 541
Score = 32.3 bits (72), Expect = 0.17
Identities = 23/86 (26%), Positives = 39/86 (44%), Gaps = 7/86 (8%)
Frame = +2
Query: 67 HDAKANSSLAHSVMNMVGMLIGLGQLSTPYAVEQGGWASAILLIALGVMCTYTCHLLGKC 126
H K ++ +V ++V +IG G LS P+++ Q GW + I + CT L
Sbjct: 281 HPLKRTGTVWTAVAHIVTGVIGSGVLSLPWSIAQLGWLAGPFSILIIASCTLFSAFLLCD 460
Query: 127 LKKNP-------KLRSYVDIGNHAFG 145
++P + SY+D+ N G
Sbjct: 461 TYRSPDPEYGPDRSASYLDVVNLNIG 538
>BP057409
Length = 477
Score = 31.2 bits (69), Expect = 0.38
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 388 LALTVPYFEHVLSLTGSLVSVAISLIFPCAFYIK 421
+A+ +P+F VL + GSL +++ FP YIK
Sbjct: 430 IAMLIPFFNDVLGILGSLNFWPLTVYFPVEMYIK 329
>TC9964
Length = 566
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 418 FYIKICRGQISKPLFVLNISIITFGFLLGVVGTISS 453
F+ + + ++ V +++I+ FGF++ V GTISS
Sbjct: 1 FHCLVFKEELGWRCMVPDVAIVVFGFVVAVTGTISS 108
>TC16435 UP|Q9UMR7 (Q9UMR7) Dendritic cell immunoreceptor, partial (5%)
Length = 765
Score = 28.5 bits (62), Expect = 2.5
Identities = 25/87 (28%), Positives = 35/87 (39%), Gaps = 6/87 (6%)
Frame = +2
Query: 250 FLRLHNIPSISGIYIFSYGGHIVFPNLYKAMKDPSK------FTKVSILSFTTVTALYTI 303
FL N S+ + S FP L++ + P FTK S LSFT +Y
Sbjct: 161 FLSCTNFVSLFLFVLLS*YAISSFPYLFQEIHSPESVLLPGAFTKTSTLSFTYRVPVYFS 340
Query: 304 MGYMGAKMFGPEVNSQVTLSMPSKQIV 330
++ KM + N T SK+ V
Sbjct: 341 ALFVSFKMMICDFNFFFTFCSASKKFV 421
>TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%)
Length = 2554
Score = 28.1 bits (61), Expect = 3.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 199 AVLVALPSL-WLRDLSSISFLSSVGVLMSVVIFVSVAATA 237
+VLV PS+ WLRDL L S+G+L S + + T+
Sbjct: 2080 SVLVCSPSVSWLRDLGKSCALFSLGLLSSASLLILFNTTS 1961
>TC14210 similar to PIR|A84668|A84668 Argonaute (AGO1)-like protein [imported]
- Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (40%)
Length = 1525
Score = 28.1 bits (61), Expect = 3.2
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +3
Query: 355 IQLEHKLPSSMSGRTKMILRGIIGSSLLLVILALALT 391
I L+H+L S S RT +I +G LLLV+L +L+
Sbjct: 1077 ILLQHRLGSL*SSRTSLIRLRAMGGLLLLVLLLSSLS 1187
>TC9745 similar to UP|V727_ARATH (Q9M376) Vesicle-associated membrane
protein 727 (AtVAMP727), partial (70%)
Length = 721
Score = 27.7 bits (60), Expect = 4.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 329 IVTKIALWATVLTPMTKYALEFAPVAIQLEHKLPSSMSGRT 369
I + +A VL T+Y F+ +A+Q KLPS+ S T
Sbjct: 231 IYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYT 353
>BP063059
Length = 480
Score = 27.3 bits (59), Expect = 5.5
Identities = 19/53 (35%), Positives = 32/53 (59%), Gaps = 2/53 (3%)
Frame = +1
Query: 179 LHLKQLHLAKLSAPQILTVGAVLVALPSLW--LRDLSSISFLSSVGVLMSVVI 229
+HL Q+ L +L A I TVG + AL + W L+ L+ + FL S +L+ +++
Sbjct: 178 MHLIQMSLVQLHA*WIQTVGKISNALQN-WEKLQQLAFLHFLVSSPILLLLLL 333
>TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like
arabinogalactan-protein 9 {Arabidopsis thaliana;},
partial (38%)
Length = 942
Score = 27.3 bits (59), Expect = 5.5
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Frame = +1
Query: 170 SLHDNLTTVLHLKQLHLAKLSAPQILT-------VGAVLVALPSLWLRD----LSSISFL 218
SLH L + HLKQL L + AP+ ++V L +W+ D L S ++
Sbjct: 574 SLHLQLHLLSHLKQLPLMRHRAPERRVELRRRRLARRIMVWLGGMWVWDWFLGLDSFAWE 753
Query: 219 SSVGVLMSVVIF 230
S+ ++M ++ F
Sbjct: 754 LSLDLIMRIINF 789
>TC14217
Length = 985
Score = 27.3 bits (59), Expect = 5.5
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Frame = -3
Query: 395 FEHVLSLTGSLVSVAISLIFPCAFYIKI----CRGQISKPLFVLNISII 439
F+ +SLTGSL++V IS F AF + C ++ F L++S++
Sbjct: 314 FDANVSLTGSLMAVEISSTFVSAFSSFLSSTACVSFLTFSTFTLSVSVV 168
>TC17041 homologue to GB|AAL25568.1|16648753|AY058152 AT5g16150/T21H19_70
{Arabidopsis thaliana;} , partial (18%)
Length = 632
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 106 AILLIALGVMCTYTCHLLGK 125
++LLI L +C YTC+LL +
Sbjct: 344 SVLLIELVCLCMYTCYLLSR 403
>TC19453 weakly similar to UP|O22613 (O22613) Plasma membrane proton ATPase,
partial (3%)
Length = 530
Score = 26.9 bits (58), Expect = 7.2
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 108 LLIALGVMCTYTCHLL-GKCLKKNPKLRSYVD 138
+L+ L ++C + HL KCL+ N K++SY++
Sbjct: 208 ILVELYMVCLHFNHLCPSKCLEINTKMKSYMN 113
>TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like protein,
partial (27%)
Length = 713
Score = 26.6 bits (57), Expect = 9.3
Identities = 14/53 (26%), Positives = 25/53 (46%), Gaps = 1/53 (1%)
Frame = +1
Query: 77 HSVMNMVGMLIGLGQLSTPYAVEQGGWA-SAILLIALGVMCTYTCHLLGKCLK 128
H+ ++ ++G L+ PYA GW + L +G + Y L+ K L+
Sbjct: 187 HAGFHLTTAIVGPTILTLPYAFRGLGWVLGFVCLTVMGAVTFYAYFLMSKVLE 345
>TC15198 similar to UP|IF35_ARATH (O04202) Eukaryotic translation initiation
factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit)
(eIF3f), partial (35%)
Length = 668
Score = 26.6 bits (57), Expect = 9.3
Identities = 12/47 (25%), Positives = 25/47 (52%)
Frame = -1
Query: 1 MLKKSLILQQNCLQHENQVDSGHGANLGVQLANCNSCVEESQLCKCD 47
M +K +++NCL + + +S + L++C +++LC CD
Sbjct: 374 MTRKETSIRKNCLCSQTEEESQN-------LSSCVQFFSQAKLCSCD 255
>TC15744 homologue to UP|Q00508 (Q00508) Ribosomal protein L41 (Ribosomal
protein L44), complete
Length = 575
Score = 26.6 bits (57), Expect = 9.3
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Frame = +1
Query: 360 KLPSSMSGRTKMILRG---IIGSSLLLVI 385
+LPS+ RT ++LRG +IGS+L++V+
Sbjct: 151 RLPSTRRVRTALLLRGSVVMIGSNLVMVV 237
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,977,875
Number of Sequences: 28460
Number of extensions: 112853
Number of successful extensions: 796
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of query: 464
length of database: 4,897,600
effective HSP length: 93
effective length of query: 371
effective length of database: 2,250,820
effective search space: 835054220
effective search space used: 835054220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0044a.9