TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0043b.5
         (298 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15086 similar to UP|Q8VZF6 (Q8VZF6) AT5g45560/MFC19_23, partia...   212  5e-56
TC14659 similar to UP|Q8W553 (Q8W553) AT5g35180/T25C13_60, parti...   124  3e-29
AU251811                                                              103  4e-23
AV780529                                                               93  6e-20
BP055167                                                               55  1e-08
AI967640                                                               41  2e-04
BP034293                                                               39  8e-04
TC19960 similar to UP|Q9SKN8 (Q9SKN8) At2g28320 protein, partial...    37  0.003
TC18656 similar to UP|Q8W553 (Q8W553) AT5g35180/T25C13_60, parti...    28  1.4
AV776133                                                               27  3.2
TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, pa...    27  5.4
TC15505 gb|M82900.1|TOBCP16SRD Nicotiana plumbaginifolia 16S rRN...    26  9.3

>TC15086 similar to UP|Q8VZF6 (Q8VZF6) AT5g45560/MFC19_23, partial (38%)
          Length = 1542

 Score =  212 bits (540), Expect = 5e-56
 Identities = 109/229 (47%), Positives = 152/229 (65%)
 Frame = +2

Query: 40  GSLRHVDLHTGTNGWASPPGDLFSLRSTNYFTKRQKSPAGNYLLSPAGMDWLKSTAKLEN 99
           G+LR  D     + W    G+ F +RS ++   + K PAG +LL    +DW K + ++++
Sbjct: 335 GNLRRDDRDNARDCWKISDGNNFRVRSKHFCHDKSKVPAGKHLLDLVAVDWFKDSKRMDH 514

Query: 100 VLARADNRVSNALRTRKSFIFAVNLQIPGGKDHHSAVFYFATEEPIQPGSLLDRFVNGDD 159
           V AR +   +     +  F F +NLQ+PG   H+S VFYF T+E + PGSLL RFV+GDD
Sbjct: 515 V-ARRNGCAAQVASEKGFFSFIINLQVPGST-HYSMVFYFVTKELV-PGSLLQRFVDGDD 685

Query: 160 GFRNQRFKLVNRIVKGPWIVKKAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGSSAIAN 219
            FRN RFKL+  + KG WIV+++VG+ + CLLGKA+ CNY RG  YLEIDVDIGSS +AN
Sbjct: 686 EFRNSRFKLIPSVPKGSWIVRQSVGS-TPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVAN 862

Query: 220 AILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRVCQMEMSSATV 268
            +L L +G +T + +DM F+++A   +ELPERLIGAVRV  +E+ SA V
Sbjct: 863 GVLGLVVGVITTLVVDMAFLVQANTPDELPERLIGAVRVSHLELKSAIV 1009


>TC14659 similar to UP|Q8W553 (Q8W553) AT5g35180/T25C13_60, partial (14%)
          Length = 840

 Score =  124 bits (310), Expect = 3e-29
 Identities = 57/112 (50%), Positives = 87/112 (76%)
 Frame = +1

Query: 159 DGFRNQRFKLVNRIVKGPWIVKKAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGSSAIA 218
           D FR+ RFKL+  IV+G W+VK+AVG   ACLLGKA+TC Y +  N+LEIDVDIGSS++A
Sbjct: 4   DVFRDSRFKLIPSIVEGYWLVKRAVGT-KACLLGKAVTCKYFKQDNFLEIDVDIGSSSVA 180

Query: 219 NAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRVCQMEMSSATVVD 270
            ++++L LGYVT + +D+  ++EA+ E+ELPE ++G VR+ ++++ SA  ++
Sbjct: 181 RSVINLVLGYVTNLVVDLAILVEAKDEKELPEYILGTVRLNRLKLESAVPLE 336


>AU251811 
          Length = 287

 Score =  103 bits (257), Expect = 4e-23
 Identities = 44/70 (62%), Positives = 56/70 (79%)
 Frame = +3

Query: 130 KDHHSAVFYFATEEPIQPGSLLDRFVNGDDGFRNQRFKLVNRIVKGPWIVKKAVGNYSAC 189
           KDH+SA+ YF T+EPI  GSL+DRF+ GDD FRN R KL+  IVKGPWIV+KAVG  + C
Sbjct: 78  KDHYSAIAYFTTKEPIAEGSLMDRFLKGDDAFRNSRLKLIANIVKGPWIVRKAVGEQAIC 257

Query: 190 LLGKALTCNY 199
           ++G+AL+C Y
Sbjct: 258 VIGRALSCKY 287


>AV780529 
          Length = 578

 Score = 92.8 bits (229), Expect = 6e-20
 Identities = 44/96 (45%), Positives = 64/96 (65%)
 Frame = -1

Query: 174 KGPWIVKKAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGSSAIANAILHLALGYVTAVT 233
           KG WIV + VG   ACL+G+AL  NY  G +YLE+ +DIGSS +A A++ L LGY+  + 
Sbjct: 578 KGSWIVIQTVGK-KACLIGQALEINYFHGQDYLELGIDIGSSTVARAVVSLVLGYLNHLV 402

Query: 234 IDMGFVIEAQAEEELPERLIGAVRVCQMEMSSATVV 269
           I+M FVI+    EELPE L+G  R+  ++ S + ++
Sbjct: 401 IEMAFVIQGHTREELPEFLLGTCRLHHLDASQSVLL 294


>BP055167 
          Length = 522

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 23/63 (36%), Positives = 41/63 (64%)
 Frame = -3

Query: 207 EIDVDIGSSAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRVCQMEMSSA 266
           ++ +DIGSS +A  ++ L LGY+  + I+M F+I+    EELPE L+G  R+  ++ S +
Sbjct: 415 QLGIDIGSSTVARGVVSLVLGYLNHLVIEMAFLIQGXTREELPEFLLGTCRLNHLDASQS 236

Query: 267 TVV 269
            ++
Sbjct: 235 VLL 227


>AI967640 
          Length = 319

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 40/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 199 YHRGSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVR 257
           + +G NY EID+DI   S I+   L      V    +D+G  I+AQ +EELPE+++  +R
Sbjct: 38  FFKGPNYFEIDLDIHRFSYISRRGLDSLRDRVKHGILDVGLTIQAQKQEELPEQVLCCLR 217

Query: 258 VCQMEM 263
           + ++++
Sbjct: 218 LNKIDL 235


>BP034293 
          Length = 522

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 1/61 (1%)
 Frame = -1

Query: 199 YHRGSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVR 257
           ++ G NY EID+D+   S I+       L  +    +D+G  I+    EELPE+L+  +R
Sbjct: 258 FYSGENYFEIDIDMHRFSYISRKGFEAFLDRLKVCVLDVGLTIQGNQPEELPEQLLCCIR 79

Query: 258 V 258
           +
Sbjct: 78  L 76


>TC19960 similar to UP|Q9SKN8 (Q9SKN8) At2g28320 protein, partial (8%)
          Length = 507

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/42 (40%), Positives = 27/42 (63%)
 Frame = +1

Query: 232 VTIDMGFVIEAQAEEELPERLIGAVRVCQMEMSSATVVDSLY 273
           + ++M F+I+   ++ELPE LIG  R+  M+ S A V+ S Y
Sbjct: 4   LVVEMAFLIQGNTQDELPEVLIGTCRLNHMDASKAFVLKS*Y 129


>TC18656 similar to UP|Q8W553 (Q8W553) AT5g35180/T25C13_60, partial (4%)
          Length = 477

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 14/30 (46%), Positives = 15/30 (49%)
 Frame = +1

Query: 40  GSLRHVDLHTGTNGWASPPGDLFSLRSTNY 69
           GSLR       TN W SP G  F +R  NY
Sbjct: 379 GSLRKGKDDNDTNCWTSPSGKGFMIRGKNY 468


>AV776133 
          Length = 533

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 24/108 (22%), Positives = 39/108 (35%)
 Frame = +3

Query: 8   STVRTLLIMCPQTNTHRSSGETVDWISDAINGGSLRHVDLHTGTNGWASPPGDLFSLRST 67
           ST R + +  P    HR +      +   +  G+    D      GW   PG        
Sbjct: 99  STTRRVSLPDPCLFLHRMNSSQPPKLLRLLGRGNTWQCDEVKPRTGWVRRPGSRMWTWEQ 278

Query: 68  NYFTKRQKSPAGNYLLSPAGMDWLKSTAKLENVLARADNRVSNALRTR 115
           +  TK  ++   N L  PA   W+  +A   ++  R +  V+    TR
Sbjct: 279 HETTKSARAVQCNLLAGPAPGPWMTYSALGGHLRYRRNTPVTQIKPTR 422


>TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, partial (23%)
          Length = 414

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 97  LENVLARADNRVSNALRTRKSFIFAVN--LQIPGGKDHHSAVFYF 139
           +E ++  AD   SN L+  ++ +  +N  L+ P GK  H A F+F
Sbjct: 59  IEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHF 193


>TC15505 gb|M82900.1|TOBCP16SRD Nicotiana plumbaginifolia 16S rRNA gene,
           partial (43%)
          Length = 668

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
 Frame = -1

Query: 24  RSSGETVD-------WIS---DAINGGSLRHVDLHTGTNGWASPPGDLFSLRSTNYFTKR 73
           +S G T+D       W +   + I+GG+++ V++   TNG ++  G     R  +  TK 
Sbjct: 545 KSQGSTLDRWWKLPSWSTVGAEGISGGAVKCVEIGKNTNGESTLLG-----RH*H*ETKA 381

Query: 74  QKSPAGNYLLSPAGMDWLKSTAKLENVLARADNRVSNAL 112
           + +    Y  SP+   W+    +++       N V+NAL
Sbjct: 380 RGANGIRYPSSPSRKRWILGAVRIDPC-----NAVANAL 279


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,923,349
Number of Sequences: 28460
Number of extensions: 62323
Number of successful extensions: 270
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of query: 298
length of database: 4,897,600
effective HSP length: 90
effective length of query: 208
effective length of database: 2,336,200
effective search space: 485929600
effective search space used: 485929600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)