BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0043b.1
(188 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP067296 119 2e-28
TC14090 homologue to UP|ALF_CICAR (O65735) Fructose-bisphosphate... 28 0.75
TC16958 similar to UP|Q9FNG9 (Q9FNG9) Gb|AAF02137.1, partial (20%) 27 1.7
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety... 27 2.2
TC17878 similar to GB|AAK91488.1|15215889|AY050475 AT5g02770/F9G... 27 2.2
BP033484 27 2.2
AV419106 27 2.9
AW164042 27 2.9
TC9153 weakly similar to UP|HS82_YEAST (P02829) Heat shock prote... 27 2.9
AV765408 26 3.7
TC18964 26 3.7
TC16506 homologue to UP|Q8VYH4 (Q8VYH4) AT5g15260/F8M21_150, par... 26 3.7
TC8895 similar to GB|AAD18096.1|4337175|T31J12 ESTs gb|T20589, g... 26 3.7
BP034215 26 4.9
TC13941 26 4.9
BP049555 26 4.9
TC12470 similar to UP|Q9LJH9 (Q9LJH9) Gb|AAD25781.1, partial (5%) 25 6.4
TC15701 similar to UP|Q9FMM3 (Q9FMM3) Gb|AAC80623.1, partial (10%) 25 6.4
>BP067296
Length = 523
Score = 119 bits (299), Expect = 2e-28
Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 6/168 (3%)
Frame = -3
Query: 3 IRKAVCVEGLNEEEELTGGIPRRHMTQLSQVWTSLLLRNIWPSLHVTSLPVTKENLLYSI 62
+RK +C+EGL + ++ GGI R M QL +W + L+ N+ PS HV+ LP+TK L+YSI
Sbjct: 506 VRKKLCIEGL-DTTKMKGGIYRACMKQLPLIWMNFLVTNMLPSSHVSDLPLTKACLVYSI 330
Query: 63 LEGHSVDIAAVMSNAIADAIQRDAPVMILPSIITDLCKFHNVPILSGHQEALKSEIDAWY 122
LE SV+IAAV+S+ +A I MI P++I +LCK HNVP+ + ++ L+ I A Y
Sbjct: 329 LEQDSVNIAAVISDHLAKCIGNGVKSMIFPALIHELCKLHNVPMNADNELPLQYPITAAY 150
Query: 123 VQIFCQEKSKEELLKEIRKK------KEPKHPPAPQGPQPSQMELLMA 164
+Q C+E + E +K ++P+ P PQ SQM+ +++
Sbjct: 149 IQQNCKENDLDTAKAEFARKLHETQPEQPEQVPPTHEPQSSQMDQILS 6
>TC14090 homologue to UP|ALF_CICAR (O65735) Fructose-bisphosphate aldolase,
cytoplasmic isozyme , partial (98%)
Length = 1491
Score = 28.5 bits (62), Expect = 0.75
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +3
Query: 23 PRRHMTQLS-QVWTSLLLRNIWPSLHVTSLPVTK-----ENLLYSILEGH 66
P R + QL Q+W S L+ + L TS+P T+ L S+LEGH
Sbjct: 885 PSRGLCQLQFQLWFSCLVGRVRSKLPSTSMPSTRSRERSHGLSPSLLEGH 1034
>TC16958 similar to UP|Q9FNG9 (Q9FNG9) Gb|AAF02137.1, partial (20%)
Length = 644
Score = 27.3 bits (59), Expect = 1.7
Identities = 22/109 (20%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Frame = +2
Query: 34 WTSLLLRNIWP-SLHVTSLP------VTKENLLYSILEGHSVDIAAVMSNAIADAIQRDA 86
+TSLLL +I+ S + +P + ++L ++L+ H ++A ++ A+
Sbjct: 191 YTSLLLFSIFSISSQSSQIPGSGPGQINSNSILVALLDSHYTELAELVEKAM-------- 346
Query: 87 PVMILPSIITDLCKFHNVPILSGHQEALKSEIDAWYVQIFCQEKSKEEL 135
L + HN+ I + EAL+ ++D + + + ++ L
Sbjct: 347 ----LLQTLEQTVGSHNITIFAPKNEALERDLDPDFKRFLLEPRNLHSL 481
>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1
(HD1), partial (5%)
Length = 636
Score = 26.9 bits (58), Expect = 2.2
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = +3
Query: 128 QEKSKEELLKEIRKKKEPKHPPAPQGPQPSQMELLMASMQRLETTHGEMREENRAQ 183
+E KEE KE KK EPK PQ + + E ++ E E ++E AQ
Sbjct: 39 EEPKKEEPQKEEEKKDEPK-SEEPQKEEAKKEEPKKEEEKKDEKKEEEKKKEQPAQ 203
>TC17878 similar to GB|AAK91488.1|15215889|AY050475 AT5g02770/F9G14_80
{Arabidopsis thaliana;}, partial (17%)
Length = 465
Score = 26.9 bits (58), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 132 KEELLKEIRKKKEPKHPPAPQ-GPQPSQME 160
++ L K KK+PK+PP P P P+Q++
Sbjct: 99 RKTLTKP*NPKKKPKNPPHPNPNPNPNQIQ 188
>BP033484
Length = 540
Score = 26.9 bits (58), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = +2
Query: 83 QRDAPVMILPSIITDLCKFHNVPILSGHQEALKSEIDAWYVQI 125
Q+ +P M+ S+I D C+FH VP G + D +V+I
Sbjct: 356 QQVSPAML--SLILDYCRFHQVP---GRSNKERKSYDEKFVRI 469
>AV419106
Length = 192
Score = 26.6 bits (57), Expect = 2.9
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +2
Query: 137 KEIRKKKEPKHPPA--PQGPQPSQM 159
K+++KK +PKH P P PQP+++
Sbjct: 113 KKLKKKHKPKHSPRTNPVQPQPNRI 187
>AW164042
Length = 404
Score = 26.6 bits (57), Expect = 2.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 114 LKSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAP-QGPQPSQMELLMA 164
LKS I ++ C ++ E ++ +RKKK PP P Q PS +++L+A
Sbjct: 47 LKSLITTS*IKKHCMQRILEAVMTYLRKKK--LLPPEPTQDQTPSLLDVLLA 196
>TC9153 weakly similar to UP|HS82_YEAST (P02829) Heat shock protein HSP82,
partial (4%)
Length = 760
Score = 26.6 bits (57), Expect = 2.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 129 EKSKEELLKEIRKKKEPKHPPAPQGPQPSQMELLMASMQRLETTHGEMREENRAQY 184
EK KEE K + KKK+PK E + ++ E + +MR+ N Y
Sbjct: 344 EKKKEEGKKPVEKKKDPK-------------EEMAEIVRAYENYYSQMRQPNPYYY 472
>AV765408
Length = 507
Score = 26.2 bits (56), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 135 LLKEIRKKKEPKHPPAPQGPQ 155
LL + + + +PK PP PQ PQ
Sbjct: 128 LLHQHQHQHQPKAPPVPQSPQ 190
>TC18964
Length = 397
Score = 26.2 bits (56), Expect = 3.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 10 EGLNEEEELTGGIPRRHMTQLSQVWTSLLLRNIW 43
EGL E +E G +PR H+ +L + L L ++W
Sbjct: 126 EGLLERQESLGDVPRFHLCRLGEEEGGLCL-SLW 28
>TC16506 homologue to UP|Q8VYH4 (Q8VYH4) AT5g15260/F8M21_150, partial (28%)
Length = 652
Score = 26.2 bits (56), Expect = 3.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 15 EEELTGGIPRRHMTQLSQVWTSLLLRNIWPS-LHVTSLPVTKENLLYSIL 63
E + + I RRH+ QLS + ++ R + L++T++ + +L++IL
Sbjct: 166 ENKHSSSIRRRHLLQLSFKFPMMITRQFKETLLNITTILAQRRRILHTIL 17
>TC8895 similar to GB|AAD18096.1|4337175|T31J12 ESTs gb|T20589, gb|T04648,
gb|AA597906, gb|T04111, gb|R84180, gb|R65428, gb|T44439,
gb|T76570, gb|R90004, gb|T45020, gb|T42457, gb|T20921,
gb|AA042762 and gb|AA720210 come from this gene.
{Arabidopsis thaliana;}, partial (63%)
Length = 1089
Score = 26.2 bits (56), Expect = 3.7
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 115 KSEIDAWYVQIFCQEKSKEELLKEI 139
KSEI ++ + CQEKSK ELLKEI
Sbjct: 98 KSEI--YHGDLLCQEKSK-ELLKEI 163
>BP034215
Length = 524
Score = 25.8 bits (55), Expect = 4.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 66 HSVDIAAVMSNAIADAIQRDAPVMILPSIITDLCKFHNVPILSGHQEALKSEIDAWYVQI 125
+SVD + + D I P +++P+ + C+F +S H+E L+ D W +
Sbjct: 314 NSVDCGYYVMKFMKDIITH--PPLVIPTKYFEDCQF-----VSYHEEPLREVKDEWAAYV 156
Query: 126 F 126
F
Sbjct: 155 F 153
>TC13941
Length = 550
Score = 25.8 bits (55), Expect = 4.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 131 SKEELLKEIRKKKEPKHPPAPQG 153
+K L+ + PKHPP PQG
Sbjct: 430 NKPTLILGLYHHSPPKHPPCPQG 498
>BP049555
Length = 555
Score = 25.8 bits (55), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 129 EKSKEELLKEIRKKKEPKHPPAP 151
E+ KEE E KK+E PPAP
Sbjct: 326 EEKKEEEKPEEEKKEEEPKPPAP 394
>TC12470 similar to UP|Q9LJH9 (Q9LJH9) Gb|AAD25781.1, partial (5%)
Length = 825
Score = 25.4 bits (54), Expect = 6.4
Identities = 12/38 (31%), Positives = 21/38 (54%)
Frame = -3
Query: 115 KSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAPQ 152
K+++ + +QI +K+E L+ K +HPP PQ
Sbjct: 130 KTQLHSIIIQISFSSAAKQEFLQ----KNPTQHPPGPQ 29
>TC15701 similar to UP|Q9FMM3 (Q9FMM3) Gb|AAC80623.1, partial (10%)
Length = 1030
Score = 25.4 bits (54), Expect = 6.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 125 IFCQEKSKEELLKEIRKKKEPKH 147
+ C + K+++LKE+ K +PKH
Sbjct: 891 LLC*KNKKQKILKELIYKLQPKH 823
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,542,902
Number of Sequences: 28460
Number of extensions: 51901
Number of successful extensions: 470
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of query: 188
length of database: 4,897,600
effective HSP length: 85
effective length of query: 103
effective length of database: 2,478,500
effective search space: 255285500
effective search space used: 255285500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0043b.1