Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0042.13
         (250 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14816                                                               496  e-141
TC13044 similar to UP|FKB7_WHEAT (Q43207) 70 kDa peptidylprolyl ...    48  1e-06
TC16034 homologue to UP|FKB2_VICFA (Q41649) FK506-binding protei...    40  3e-04
CB828787                                                               39  0.001
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k...    38  0.001
BP036216                                                               38  0.002
BP055278                                                               36  0.005
BP072816                                                               36  0.005
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]...    36  0.005
TC14175 similar to UP|Q9SII5 (Q9SII5) At2g17230 protein (At2g172...    36  0.007
TC18264 similar to UP|Q9SP93 (Q9SP93) Thiol protease, partial (4%)     35  0.009
TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1...    35  0.012
AU251819                                                               35  0.012
TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported]...    35  0.012
BP033767                                                               35  0.012
BP044070                                                               35  0.016
CB828813                                                               34  0.021
AV420351                                                               34  0.021
TC11455 similar to UP|Q9ZUS8 (Q9ZUS8) At2g37380 protein, partial...    34  0.021
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate...    34  0.021

>TC14816 
          Length = 952

 Score =  496 bits (1276), Expect = e-141
 Identities = 249/250 (99%), Positives = 249/250 (99%)
 Frame = +2

Query: 1   MATFFGSPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPI 60
           MATFFGSPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPI
Sbjct: 29  MATFFGSPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPI 208

Query: 61  KPVTSSTKVDSTDWIATSLTRRFGLGAGLAWVGFLAFGVVSEQIKTRLEVSQQEANTRDV 120
           KPVTSSTKVDSTDWIATSLTRRFGLGAGLAWVGFLAFGVVSEQIKTRLEVSQQEANTRDV
Sbjct: 209 KPVTSSTKVDSTDWIATSLTRRFGLGAGLAWVGFLAFGVVSEQIKTRLEVSQQEANTRDV 388

Query: 121 EKEEEVTLPNGIRYCELKVGGGASPRPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALV 180
           EKEEEVTLPNGIRYCELKVGGGASPRPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALV
Sbjct: 389 EKEEEVTLPNGIRYCELKVGGGASPRPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALV 568

Query: 181 MGSRPYSKGVCEGIEYVLKTMKAGGKRKVIVPPQLGFRENGADLGSGVQIPPLATLEYIV 240
           MGSRPY KGVCEGIEYVLKTMKAGGKRKVIVPPQLGFRENGADLGSGVQIPPLATLEYIV
Sbjct: 569 MGSRPYRKGVCEGIEYVLKTMKAGGKRKVIVPPQLGFRENGADLGSGVQIPPLATLEYIV 748

Query: 241 EVDKVSIAPA 250
           EVDKVSIAPA
Sbjct: 749 EVDKVSIAPA 778


>TC13044 similar to UP|FKB7_WHEAT (Q43207) 70 kDa peptidylprolyl isomerase
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) , partial (26%)
          Length = 531

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
 Frame = +2

Query: 118 RDVEKEEEVTLPNGIRYCELKVGGG-ASPRPGDLVVIDIMGKVESTGEVFVNTFEGDKKP 176
           +D   EE     +G+R   LK G G  +P  GD V +   G +   G  F ++ + D  P
Sbjct: 86  KDKVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLD-GSKFDSSRDRDA-P 259

Query: 177 LALVMGSRPYSKGVCEGIEYVLKTMKAGGKRKVIVPPQLGFRENGADLGSGVQIPPLATL 236
            +  +G     KG  EGI    KTMK G      +PP+L + E+    GS   IPP ATL
Sbjct: 260 FSFTLGQGQVIKGWDEGI----KTMKKGENALFTIPPELAYGES----GSPPTIPPNATL 415

Query: 237 EYIVEV 242
           ++ VE+
Sbjct: 416 QFDVEL 433


>TC16034 homologue to UP|FKB2_VICFA (Q41649) FK506-binding protein 2
           precursor  (Peptidyl-prolyl cis-trans isomerase)
           (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15) , partial
           (91%)
          Length = 592

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
 Frame = +3

Query: 121 EKEEEVT-LPNGIRY----CELKVGGGASPRPGDLVVIDIMGKVESTGEVFVNTFEGDKK 175
           +K  +VT L  G++Y    CE++         GD V +   GK+ + G VF ++FE +  
Sbjct: 90  KKTADVTELQIGVKYKPTSCEVQA------HKGDKVKVHYRGKL-TDGTVFDSSFERNS- 245

Query: 176 PLALVMGSRPYSKGVCEGIEYVLKTMKAGGKRKVIVPPQLGFRENGADLGSGVQIPPLAT 235
           P+   +GS    KG  +G    L  M  G KRK+ +P +LG+ E     GS   IP  AT
Sbjct: 246 PIDFELGSGQVIKGWDQG----LLGMCLGEKRKLKIPAKLGYGEQ----GSPPTIPGGAT 401

Query: 236 LEYIVEV 242
           L +  E+
Sbjct: 402 LVFDTEL 422


>CB828787 
          Length = 343

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 19/49 (38%), Positives = 32/49 (64%)
 Frame = +1

Query: 197 VLKTMKAGGKRKVIVPPQLGFRENGADLGSGVQIPPLATLEYIVEVDKV 245
           +++ M+ GGKR V+VPP+ G+ + G +     +IPP AT E  +E+ +V
Sbjct: 202 IVEGMRVGGKRTVLVPPENGYGKRGMN-----EIPPGATFEMNIELLQV 333


>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
           partial (16%)
          Length = 486

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 24/73 (32%), Positives = 32/73 (42%), Gaps = 2/73 (2%)
 Frame = +1

Query: 7   SPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQ--GTAKAQPQNPIKPVT 64
           SPP  S   T+   H  +S P  P   P  ++ PTA +S S       K+ P  P  P  
Sbjct: 232 SPPNPSTSTTQQPKHSPTSPPASPSPSPPSTKPPTAMASPSTSPLSATKSHPTPPAAPSA 411

Query: 65  SSTKVDSTDWIAT 77
           SST   +T  + T
Sbjct: 412 SSTPPPTTTSLKT 450



 Score = 33.5 bits (75), Expect = 0.036
 Identities = 21/66 (31%), Positives = 36/66 (53%), Gaps = 2/66 (3%)
 Frame = +1

Query: 5   FGSPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQS-PTASSSQSVQGTAKAQPQ-NPIKP 62
           +  PP  S   T +     +S+ TPPP P + +++ PTA S+ +   T+ A  + +P  P
Sbjct: 67  YSPPPPPSQQPTHSPSTSPTSTTTPPPSPTKVTENPPTAPSTSTKSPTSSASEEPSPPNP 246

Query: 63  VTSSTK 68
            TS+T+
Sbjct: 247 STSTTQ 264



 Score = 30.0 bits (66), Expect = 0.39
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +1

Query: 21 HIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQP------QNPIKPVTSSTK 68
          H +SSS +    PP  SQ PT S S S   T    P      +NP    ++STK
Sbjct: 40 HTSSSSSSSYSPPPPPSQQPTHSPSTSPTSTTTPPPSPTKVTENPPTAPSTSTK 201



 Score = 26.2 bits (56), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 20 HHIASSSPTPPPIPP 34
          HH+  SS  PPP PP
Sbjct: 20 HHVGCSSTLPPPPPP 64


>BP036216 
          Length = 574

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 38/123 (30%), Positives = 55/123 (43%), Gaps = 1/123 (0%)
 Frame = +1

Query: 121 EKEEEVTLPNGIRYCELKVGGGA-SPRPGDLVVIDIMGKVESTGEVFVNTFEGDKKPLAL 179
           EKE  +    G++   +K G G  +P  GD V +   G +    +   +   G   P   
Sbjct: 175 EKEXGI---QGLKKKLIKEGEGXDTPDAGDEVHVHYTGTLLDGTKFDSSRDRGT--PFNF 339

Query: 180 VMGSRPYSKGVCEGIEYVLKTMKAGGKRKVIVPPQLGFRENGADLGSGVQIPPLATLEYI 239
            +G     KG  EGI    KTMK G      +P +L + E+G    S   IPP ATL++ 
Sbjct: 340 TLGQGQVIKGWDEGI----KTMKKGENALFTIPAELAYGESG----SPPTIPPNATLQFD 495

Query: 240 VEV 242
           VE+
Sbjct: 496 VEL 504


>BP055278 
          Length = 449

 Score = 36.2 bits (82), Expect = 0.005
 Identities = 13/31 (41%), Positives = 23/31 (73%)
 Frame = -2

Query: 193 GIEYVLKTMKAGGKRKVIVPPQLGFRENGAD 223
           GI++ +++MK GG R+VI+PP LG++    +
Sbjct: 445 GIDFHVRSMKVGGIRRVIIPPSLGYQNTSQE 353


>BP072816 
          Length = 492

 Score = 36.2 bits (82), Expect = 0.005
 Identities = 22/72 (30%), Positives = 34/72 (46%)
 Frame = +1

Query: 7   SPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPIKPVTSS 66
           +PP+   P   +S   +SSS +P P PP    +P+ S S +   TA   P  P     +S
Sbjct: 82  NPPLSHQPC--HSPSSSSSSSSPLPSPPTTLHAPSTSPSSAPSATAAPPPSTPTPAANTS 255

Query: 67  TKVDSTDWIATS 78
           +K  ++    TS
Sbjct: 256 SKPSTSSKPTTS 291



 Score = 26.2 bits (56), Expect = 5.7
 Identities = 22/82 (26%), Positives = 33/82 (39%), Gaps = 14/82 (17%)
 Frame = +1

Query: 13  LPLTRNSHHIASSSPT--------PPPIPPQQSQSPTASSSQSVQGTAKAQP------QN 58
           LP    + H  S+SP+        PPP  P  + + ++  S S + T  A P        
Sbjct: 145 LPSPPTTLHAPSTSPSSAPSATAAPPPSTPTPAANTSSKPSTSSKPTTSAAPPASSLLST 324

Query: 59  PIKPVTSSTKVDSTDWIATSLT 80
           P KP    +   ST+  A + T
Sbjct: 325 PPKPAGPPSNPSSTNSPAPAST 390


>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (10%)
          Length = 498

 Score = 36.2 bits (82), Expect = 0.005
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
 Frame = +2

Query: 18  NSHHIASS----SPTPPPIPPQQSQSPTASSSQSVQG----------TAKAQPQNPIKPV 63
           +SHH  S+    SP PPP PP++S  P    + S+ G          T K    NP+ P+
Sbjct: 212 HSHHSTSTAALASPPPPPPPPKKSHPPPPPPTNSIPGPNGSPSSTA*TPKVTSPNPVLPM 391

Query: 64  TSSTKVDST 72
              T   ++
Sbjct: 392 ALFTSTSTS 418


>TC14175 similar to UP|Q9SII5 (Q9SII5) At2g17230 protein
           (At2g17230/T23A1.9), partial (82%)
          Length = 1447

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 16/42 (38%), Positives = 21/42 (49%)
 Frame = +2

Query: 18  NSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNP 59
           N HH+ ++ P PPP PP    +    S+   Q   K QPQ P
Sbjct: 68  NHHHVTATQPPPPPPPPLLRHN*WRGSNTEPQPPFKIQPQAP 193



 Score = 32.0 bits (71), Expect = 0.10
 Identities = 22/78 (28%), Positives = 36/78 (45%), Gaps = 8/78 (10%)
 Frame = +1

Query: 21  HIASSSPTPPPIPPQ---QSQSPTASSSQSVQGTAKAQPQNPIKPVTSS-----TKVDST 72
           H  SSSP+    PPQ   + +  T+++ Q+   ++ + P  P  P   S     +   ST
Sbjct: 88  HSTSSSPSSSSSPPQLMERFKH*TSTTLQNSTPSSHSHPSEPSPPQNGSKAPQTSLSSST 267

Query: 73  DWIATSLTRRFGLGAGLA 90
            W+ +SL R     +G A
Sbjct: 268 TWVLSSLPRSTSTSSGTA 321


>TC18264 similar to UP|Q9SP93 (Q9SP93) Thiol protease, partial (4%)
          Length = 570

 Score = 35.4 bits (80), Expect = 0.009
 Identities = 26/67 (38%), Positives = 29/67 (42%), Gaps = 10/67 (14%)
 Frame = -1

Query: 27  PTPPPIPPQQSQSPTASSSQSVQGTAKAQP---------QNPIKPVTSSTKVDSTDWIAT 77
           P PPP PP     P +  SQ V G   + P         +NP K  TS TK      I T
Sbjct: 510 PPPPPPPPPPPSPPHSPPSQIVSGPGSSPPMKPPKAPFLKNPKKSRTSITKSSKR*LINT 331

Query: 78  S-LTRRF 83
           S  TRRF
Sbjct: 330 SRATRRF 310


>TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1A
           (Forkhead-related protein FKHL2) (Transcription factor
           BF-2) (Brain factor 2) (BF2) (HFK2), partial (6%)
          Length = 1032

 Score = 35.0 bits (79), Expect = 0.012
 Identities = 21/47 (44%), Positives = 27/47 (56%), Gaps = 1/47 (2%)
 Frame = +2

Query: 27  PTPPPIPPQQSQSPTASSSQSVQGTAKAQPQN-PIKPVTSSTKVDST 72
           P PPP PP   +SPTAS + S   T+KA+     + P T S+K  ST
Sbjct: 146 PPPPPPPPPPRRSPTASCA-SPPSTSKARSTT*LVSPATPSSKPSST 283


>AU251819 
          Length = 368

 Score = 35.0 bits (79), Expect = 0.012
 Identities = 29/72 (40%), Positives = 39/72 (53%), Gaps = 5/72 (6%)
 Frame = +1

Query: 7   SPPVFSLPLTRNSHHI--ASSSPTPPPIPPQQSQSPTASSS--QSVQGTAK-AQPQNPIK 61
           SPP  SL + ++SH I  + SS + PP P   S S + SSS   SV G+ K  Q + P+ 
Sbjct: 106 SPP--SLKINKDSHSIKKSPSSSSSPPPPSLSSSSSSISSSLVNSVAGSNKPPQQRQPVI 279

Query: 62  PVTSSTKVDSTD 73
             T S +V  TD
Sbjct: 280 IYTHSPRVIHTD 315


>TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (29%)
          Length = 727

 Score = 35.0 bits (79), Expect = 0.012
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -1

Query: 7   SPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGT 51
           S P  +LP    +    ++SP  PP PP++S S TA SS+ V+ T
Sbjct: 271 SAPHLALPAPTQTTP*ETNSPDAPPAPPRRSHSSTAPSSRRVKPT 137


>BP033767 
          Length = 541

 Score = 35.0 bits (79), Expect = 0.012
 Identities = 22/59 (37%), Positives = 26/59 (43%)
 Frame = +1

Query: 8   PPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPIKPVTSS 66
           PP  S P T   HH+      PPP PP    SP +SS          +P NP  P +SS
Sbjct: 280 PPHLSSPHTHLHHHLL----LPPPSPPSPPTSPPSSS---------LKPPNPNPPTSSS 417



 Score = 25.8 bits (55), Expect = 7.4
 Identities = 18/71 (25%), Positives = 27/71 (37%)
 Frame = +3

Query: 7   SPPVFSLPLTRNSHHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPIKPVTSS 66
           S P+ +  +        S  P+ PP PP  S SP+              P NP  P +S+
Sbjct: 117 SEPIINRRILHQPFTQGSLPPSQPPNPPPPSPSPS--------------PPNPKYPFSST 254

Query: 67  TKVDSTDWIAT 77
               +T   +T
Sbjct: 255 PTTTTTQNAST 287


>BP044070 
          Length = 289

 Score = 34.7 bits (78), Expect = 0.016
 Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +3

Query: 2   ATFFGSPPVFSLPLTRNSHHIASSSPTPPPI---PPQQSQSPTASSS---QSVQGTAKAQ 55
           AT   SPP        NS   A SSP PPP     P  S  PT S S    S + T  A 
Sbjct: 66  ATSAPSPP-------SNSPPTAVSSPPPPPTRPSAPMASPPPTVSPSPRCSSTRATTXAS 224

Query: 56  PQNPIKPVTSSTKVDST 72
           P +P  P  +S+    T
Sbjct: 225 PTSPSPPTPASSSPPPT 275


>CB828813 
          Length = 465

 Score = 34.3 bits (77), Expect = 0.021
 Identities = 21/57 (36%), Positives = 27/57 (46%), Gaps = 5/57 (8%)
 Frame = +1

Query: 8   PPVFSLPLTRNSHHIASSSP-----TPPPIPPQQSQSPTASSSQSVQGTAKAQPQNP 59
           PP  + P+    H I S++P     TPPP PP    +PT +SS S        P NP
Sbjct: 154 PPNLTPPILTKPHPIGSTTPFSALTTPPPPPP--PPTPTRTSSTSKPPIPTPPPPNP 318


>AV420351 
          Length = 188

 Score = 34.3 bits (77), Expect = 0.021
 Identities = 15/44 (34%), Positives = 22/44 (49%)
 Frame = +3

Query: 20 HHIASSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPIKPV 63
          H I    P PPP PPQ   +P++  ++S   T    P  P+ P+
Sbjct: 54 HFIPPPPPPPPPQPPQPYSAPSSPLNRSTTRTLLPSPLLPLNPL 185


>TC11455 similar to UP|Q9ZUS8 (Q9ZUS8) At2g37380 protein, partial (10%)
          Length = 575

 Score = 34.3 bits (77), Expect = 0.021
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +2

Query: 24  SSSPTPPPIPPQQS-----QSPTASSSQSVQGTAKAQPQNPIKPVTSSTKVDSTDWIATS 78
           SSSP PPP PP        ++P A++  S   +  +    P  P  S     S+D+ +T+
Sbjct: 284 SSSPPPPPHPPPHPPPPPLETPLAAAHPSTATSPSSPTATPPAPAPSQRTTSSSDFTSTT 463

Query: 79  LT 80
            T
Sbjct: 464 AT 469



 Score = 26.9 bits (58), Expect = 3.3
 Identities = 17/63 (26%), Positives = 24/63 (37%), Gaps = 3/63 (4%)
 Frame = +2

Query: 8   PPVFSLPLTRNSHHIASSSPTP---PPIPPQQSQSPTASSSQSVQGTAKAQPQNPIKPVT 64
           PP    PL       A+S  +P   PP P    ++ ++S   S   T      NP     
Sbjct: 329 PPPLETPLAAAHPSTATSPSSPTATPPAPAPSQRTTSSSDFTSTTATTTTHYSNPTSRKL 508

Query: 65  SST 67
           +ST
Sbjct: 509 TST 517


>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
           dioxygenase  (4HPPD) (HPD) (HPPDase) , partial (29%)
          Length = 576

 Score = 34.3 bits (77), Expect = 0.021
 Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 9/70 (12%)
 Frame = +1

Query: 7   SPPVFSLPLTRNSH---HIASSSPTPPPIP------PQQSQSPTASSSQSVQGTAKAQPQ 57
           +PP  S P T  S    H    SP+PPP P      P  S SP  ++S S    +K+   
Sbjct: 367 TPPTSSAPATSASSSPPHTLPKSPSPPPPPSPLSPPPPASPSPPPTASPSAPSPSKSPTP 546

Query: 58  NPIKPVTSST 67
           +   P  S+T
Sbjct: 547 SKPSPPQSTT 576



 Score = 29.3 bits (64), Expect = 0.67
 Identities = 22/68 (32%), Positives = 28/68 (40%), Gaps = 8/68 (11%)
 Frame = +1

Query: 7   SPPVFSLPLTRNSHHIASSSPTPP--------PIPPQQSQSPTASSSQSVQGTAKAQPQN 58
           SPP  +L    +S    S+S +PP        P PP    SP   +S S   TA     +
Sbjct: 346 SPPETTLTPPTSSAPATSASSSPPHTLPKSPSPPPPPSPLSPPPPASPSPPPTASPSAPS 525

Query: 59  PIKPVTSS 66
           P K  T S
Sbjct: 526 PSKSPTPS 549



 Score = 26.6 bits (57), Expect = 4.3
 Identities = 18/48 (37%), Positives = 24/48 (49%)
 Frame = +1

Query: 24  SSSPTPPPIPPQQSQSPTASSSQSVQGTAKAQPQNPIKPVTSSTKVDS 71
           SSS  P P P   + SP AS+ +S Q    + P+  + P TSS    S
Sbjct: 262 SSSGAPTP-PTPHAASPGASACRSSQNQT-SPPETTLTPPTSSAPATS 399


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,202,746
Number of Sequences: 28460
Number of extensions: 72095
Number of successful extensions: 2452
Number of sequences better than 10.0: 497
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of query: 250
length of database: 4,897,600
effective HSP length: 88
effective length of query: 162
effective length of database: 2,393,120
effective search space: 387685440
effective search space used: 387685440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)


Lotus: description of TM0042.13