TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0042.1
         (635 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding ...   180  6e-67
BP066856                                                              233  5e-62
BP066148                                                              184  4e-47
BP058107                                                              179  2e-45
TC19261 similar to UP|BAD06577 (BAD06577) Cell wall protein Awa1...    93  1e-19
AV769506                                                               91  7e-19
BP071119                                                               85  4e-17
BP042402                                                               79  2e-15
BP053409                                                               68  5e-12
BP085151                                                               64  6e-11
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (...    50  8e-07
TC9801 homologue to UP|Q8LAC6 (Q8LAC6) Glycine rich protein-like...    46  2e-05
AV780545                                                               45  4e-05
TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 ho...    45  5e-05
TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%)      44  8e-05
TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, ...    43  1e-04
BI420016                                                               43  1e-04
TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Ara...    43  1e-04
BP067482                                                               42  3e-04
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein...    42  4e-04

>TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding protein A,
           partial (9%)
          Length = 562

 Score =  180 bits (456), Expect(2) = 6e-67
 Identities = 90/94 (95%), Positives = 91/94 (96%)
 Frame = +3

Query: 495 YPGEAVEDYMRWYNAVSHRFIIPDDRREEFSAVTVMRRAVDLLEQSLEVSDAPAEGTHSR 554
           YPGEAVEDYMRWY+AVSHRFIIPDDRREEFSAVTVMRR VDLLEQSLEV DAPAEGTHSR
Sbjct: 3   YPGEAVEDYMRWYSAVSHRFIIPDDRREEFSAVTVMRRVVDLLEQSLEVPDAPAEGTHSR 182

Query: 555 SLTERALDLIRSNAFIGTQGVAFAAVRGARAAGG 588
           SLTERALD IRSNAFIGTQGVAFAAVRGARAAGG
Sbjct: 183 SLTERALDFIRSNAFIGTQGVAFAAVRGARAAGG 284



 Score = 92.0 bits (227), Expect(2) = 6e-67
 Identities = 46/57 (80%), Positives = 47/57 (81%), Gaps = 10/57 (17%)
 Frame = +2

Query: 589 RGRGDRARGGRGRGGRARGEGAPAEGA----------RGGRARGPRGRRGAGRGRGE 635
           RGRGDRARGG+GRGGRARGEGAPAEGA          RGGRARGPRGRRGAGRGRGE
Sbjct: 284 RGRGDRARGGKGRGGRARGEGAPAEGAPAEGARGGRGRGGRARGPRGRRGAGRGRGE 454



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/32 (65%), Positives = 21/32 (65%)
 Frame = +2

Query: 578 AAVRGARAAGGRGRGDRARGGRGRGGRARGEG 609
           A   GAR  GGRGRG RARG RGR G  RG G
Sbjct: 362 APAEGAR--GGRGRGGRARGPRGRRGAGRGRG 451



 Score = 34.7 bits (78), Expect = 0.048
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = +2

Query: 573 QGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARGE 608
           +G      RG R  GGR RG R R G GRG   RGE
Sbjct: 356 EGAPAEGARGGRGRGGRARGPRGRRGAGRG---RGE 454


>BP066856 
          Length = 485

 Score =  233 bits (595), Expect = 5e-62
 Identities = 121/160 (75%), Positives = 131/160 (81%)
 Frame = -2

Query: 476 DAAFAEFAPHLRPQGIPATYPGEAVEDYMRWYNAVSHRFIIPDDRREEFSAVTVMRRAVD 535
           DAA+A+F PHLRP+GIPATY GE VEDYMRWY+ VSHRFIIPDDRREE SAVTV+RRAVD
Sbjct: 484 DAAYADFVPHLRPRGIPATYSGEXVEDYMRWYSGVSHRFIIPDDRREELSAVTVVRRAVD 305

Query: 536 LLEQSLEVSDAPAEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAGGRGRGDRA 595
           LLEQSLEV DA A GTH+RSL +RALDLIRS++FIGTQGVAFAAVRGA A GGRGRG RA
Sbjct: 304 LLEQSLEVLDALAVGTHARSLIKRALDLIRSSSFIGTQGVAFAAVRGAGAPGGRGRGGRA 125

Query: 596 RGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
           RG               +GARGGRA GPRGRRGAGRGR E
Sbjct: 124 RG---------------DGARGGRAHGPRGRRGAGRGRVE 50


>BP066148 
          Length = 477

 Score =  184 bits (467), Expect = 4e-47
 Identities = 96/102 (94%), Positives = 96/102 (94%)
 Frame = -2

Query: 534 VDLLEQSLEVSDAPAEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAGGRGRGD 593
           VDLLEQSLEVSDAPAEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAG RGRGD
Sbjct: 476 VDLLEQSLEVSDAPAEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAGXRGRGD 297

Query: 594 RARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
           RARGGRG     RGEGAPAEGARGGRARGPRGRRGAGRGRGE
Sbjct: 296 RARGGRG-----RGEGAPAEGARGGRARGPRGRRGAGRGRGE 186


>BP058107 
          Length = 496

 Score =  179 bits (453), Expect = 2e-45
 Identities = 93/128 (72%), Positives = 102/128 (79%), Gaps = 5/128 (3%)
 Frame = -3

Query: 510 VSHRFIIPDDRREEFSAVTVMRRAVDLLEQSLEVSDAPAEGTHSRSLTERALDLIRSNAF 569
           VSH FIIP+DRREE SAV+ +RR V+LLEQSLEV  A A GT  R LTERALDL R ++F
Sbjct: 491 VSHVFIIPEDRREELSAVSAIRRGVELLEQSLEVPGAYAPGTQPRILTERALDLFRRSSF 312

Query: 570 IGTQGVAFAAVRGARAAGGRGRGDRARGGR-----GRGGRARGEGAPAEGARGGRARGPR 624
           +GTQGVAF+A+RGA AAGGR RG RARGGR      RGGRARGEG P EG RGGRARGPR
Sbjct: 311 VGTQGVAFSAIRGAAAAGGRARGGRARGGRPRGGGARGGRARGEGDPGEGVRGGRARGPR 132

Query: 625 GRRGAGRG 632
           GRRG GRG
Sbjct: 131 GRRGQGRG 108


>TC19261 similar to UP|BAD06577 (BAD06577) Cell wall protein Awa1p, partial
           (3%)
          Length = 495

 Score = 92.8 bits (229), Expect = 1e-19
 Identities = 44/58 (75%), Positives = 47/58 (80%)
 Frame = -2

Query: 575 VAFAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRG 632
           +AF+A+RGA AAGGR RG R RGG  RGGRARGEG P EG RGGRAR PRGRRG GRG
Sbjct: 263 LAFSAIRGAAAAGGRARGGRPRGGGARGGRARGEGDPGEGVRGGRARVPRGRRGRGRG 90



 Score = 85.1 bits (209), Expect = 3e-17
 Identities = 44/69 (63%), Positives = 51/69 (73%)
 Frame = -1

Query: 227 GERDECAALCAQLMGGSVGIYEAEFDTNRSQTIRFGVLQTRYEAALAEHRYEDAARIWLV 286
           GERDE AALCAQL+GGSV  Y AEF++   QT+RF  L+T   +A+   RYEDAARIWLV
Sbjct: 495 GERDEVAALCAQLLGGSVAAYLAEFESAGGQTLRFLTLKTMSTSAMDGGRYEDAARIWLV 316

Query: 287 NQLGATLFA 295
           N L ATL A
Sbjct: 315 NPLAATLVA 289



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 17/37 (45%), Positives = 19/37 (50%)
 Frame = +1

Query: 589 RGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRG 625
           R R  R RG R R  R    G+P+  AR  RA  PRG
Sbjct: 94  RPRPRRPRGTRARPPRTPSPGSPSPRARPPRAPPPRG 204


>AV769506 
          Length = 345

 Score = 90.5 bits (223), Expect = 7e-19
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -3

Query: 126 YVDRRQLKVATAGGKVWNLACDGDSDSHRRVRELIEQTGLHQ 167
           YVDRRQLKVATAGGKVWNLACDGDSDSHRRVRELIEQTGLHQ
Sbjct: 343 YVDRRQLKVATAGGKVWNLACDGDSDSHRRVRELIEQTGLHQ 218


>BP071119 
          Length = 412

 Score = 84.7 bits (208), Expect = 4e-17
 Identities = 49/118 (41%), Positives = 63/118 (52%)
 Frame = +2

Query: 94  FPGGPVELSLLTHYADHKAPWAWHALLRTDERYVDRRQLKVATAGGKVWNLACDGDSDSH 153
           + GGP +L LLT Y +H A   W +  R +  Y  R  LK+   G       C       
Sbjct: 80  YEGGPFDLCLLTKYGEHIARDIWRSYKRPN--YETRGVLKIYNHGRM-----CHPVVHHA 238

Query: 154 RRVRELIEQTGLHQLPYCSYPVTDAGLILALVERWHEETSSFHMSFGEMTITLDDVSA 211
           R +R  +   GL  +  C+ P  D  +I A VERWH ETSSFH+ +GEMTITL+DVSA
Sbjct: 239 RYIRGAVHNAGLRWVMKCTSPSVDQSIISAFVERWHPETSSFHLPWGEMTITLEDVSA 412


>BP042402 
          Length = 409

 Score = 79.0 bits (193), Expect = 2e-15
 Identities = 55/100 (55%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
 Frame = -2

Query: 542 EVSDAPAEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAGGR--GRGDRARGGR 599
           EV DA   GT +R+LTERAL +++  A  GTQG+A+AA RG   AGGR  GR     GGR
Sbjct: 408 EVDDALLPGTQARALTERALRILKDLA--GTQGIAYAAGRGGLGAGGRAGGRAGGRAGGR 235

Query: 600 GRGGRARG-EGAPAEGAR-GGRARGPRGRRGAG--RGRGE 635
             GGRA G EG  A G R GGRA    GRRG G  RGRG+
Sbjct: 234 A-GGRAGGREGGRAAGGREGGRAGARGGRRGRGGRRGRGQ 118


>BP053409 
          Length = 441

 Score = 67.8 bits (164), Expect = 5e-12
 Identities = 39/91 (42%), Positives = 51/91 (55%), Gaps = 5/91 (5%)
 Frame = -1

Query: 548 AEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAGGRGRGDRARGG-----RGRG 602
           ++G   R LTERALDL R ++F+GTQGV F+A+RGA AAG R RG RARG      R   
Sbjct: 357 SKGHKPRILTERALDLFRRSSFVGTQGVPFSAIRGAAAAGARARGARARGXKTPWRRSSW 178

Query: 603 GRARGEGAPAEGARGGRARGPRGRRGAGRGR 633
            ++   G    G     +   +  +G G GR
Sbjct: 177 SQSSWRGRSWRGXSWXSSSWTQXSQGPGSGR 85



 Score = 67.8 bits (164), Expect = 5e-12
 Identities = 50/122 (40%), Positives = 59/122 (47%), Gaps = 10/122 (8%)
 Frame = -2

Query: 521 REEFSAVTVMRRAVDLLEQSLEVSDAPAEGTHSRSLTERALDLIRSNAFIGTQGVA---- 576
           REE SAV+ +RR V+LL++SLEV  A A    S   + R     RS +F G   +     
Sbjct: 440 REELSAVSPLRRGVELLDKSLEVQGAYAPRDTSPESSRRG----RSISFDGVPSLVPREF 273

Query: 577 ------FAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAG 630
                    +R            R RGG  RG RARGE  P E  RG RARGPR RRG  
Sbjct: 272 HFLLFEEPQLREPELVEPELVEXRPRGGGARGARARGEVDPGEVVRGXRARGPRXRRGRX 93

Query: 631 RG 632
           RG
Sbjct: 92  RG 87


>BP085151 
          Length = 360

 Score = 64.3 bits (155), Expect = 6e-11
 Identities = 41/80 (51%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = -1

Query: 557 TERALDLIRSNAFIGTQGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGAR 616
           TERAL +++  A  GTQG+A+AA RG   AGGR  G   R G   GGRA G     EG R
Sbjct: 360 TERALRILKDLA--GTQGIAYAAGRGGLGAGGRAGG---RAGVRAGGRAGGRAGGREGGR 196

Query: 617 --GGRARGPRGRRGAGRGRG 634
             GGR  G  G RG  RGRG
Sbjct: 195 AAGGREGGRAGARGVRRGRG 136


>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
           2) (AtFib2), partial (85%)
          Length = 1116

 Score = 50.4 bits (119), Expect = 8e-07
 Identities = 30/55 (54%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
 Frame = +1

Query: 581 RGARAAGG-RGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
           RG    GG RGRGDR RG    GGR  G G P + ARGG   G  GR G G GRG
Sbjct: 46  RGRGGGGGFRGRGDRGRGRGDGGGRGGGRGTPFK-ARGGGRGGGGGRGGRGGGRG 207



 Score = 27.7 bits (60), Expect = 5.9
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
 Frame = +1

Query: 571 GTQGVAFAAVRGARAAGG----RGRGDRARGGRGRGG-RARGEGAPAEG---ARGGR 619
           G +G  F A  G R  GG    RG G   RGG  +GG R   E    EG   A+GG+
Sbjct: 124 GGRGTPFKARGGGRGGGGGRGGRGGGRGGRGGGMKGGSRVVVEPHRHEGIFIAKGGK 294


>TC9801 homologue to UP|Q8LAC6 (Q8LAC6) Glycine rich protein-like, complete
          Length = 981

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 28/54 (51%), Positives = 31/54 (56%), Gaps = 7/54 (12%)
 Frame = +2

Query: 588 GRGRGDRARGGRGRGGRARGEGAPAEGARG--GRARG-----PRGRRGAGRGRG 634
           GRGRG R  G  GR  +  G G   +GA+G  GR RG     P G RGAGRGRG
Sbjct: 386 GRGRGGREEGAGGRPAKGPGRGFD-DGAKGPGGRGRGGLGGKPGGSRGAGRGRG 544


>AV780545 
          Length = 555

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 23/49 (46%), Positives = 30/49 (60%)
 Frame = +1

Query: 158 ELIEQTGLHQLPYCSYPVTDAGLILALVERWHEETSSFHMSFGEMTITL 206
           E +E+ G   L        D  LI ALVERW  ET++FH++ GEMT+TL
Sbjct: 409 E*VERAGFGYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTL 555


>TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 homolog
           (At3g57490), partial (91%)
          Length = 1076

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 29/64 (45%), Positives = 31/64 (48%)
 Frame = +2

Query: 568 AFIGTQGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRR 627
           +F+      F A    R  G RG GDR   GRG GGR RG         G R RG R RR
Sbjct: 26  SFLSAPHSLFTASMAERGGGERGGGDRGGFGRGFGGRGRG---------GDRGRGGR-RR 175

Query: 628 GAGR 631
           GAGR
Sbjct: 176 GAGR 187



 Score = 32.7 bits (73), Expect = 0.18
 Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 584 RAAGGRGRG-DRARGGRGRGGRARGE 608
           R  GGRGRG DR RGGR RG   R E
Sbjct: 119 RGFGGRGRGGDRGRGGRRRGAGRRDE 196


>TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%)
          Length = 562

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 31/77 (40%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +2

Query: 559 RALDLIRSNAFIGTQGVAFAAVRGARAAGGR---GRGDRARGGRGRGGRARGEGAPAEGA 615
           +AL+L  S+    T  V  A  R  + +GGR   GR    RGGR   GR  G G    G 
Sbjct: 59  KALELHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGG 238

Query: 616 RGGRARGPRGRRGAGRG 632
           RGG   G  G  G GRG
Sbjct: 239 RGGDRGGRGGSGGGGRG 289



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 27/54 (50%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 582 GARAAGGR---GRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRG 632
           G R+ GGR   GRG R   GRG GGR R       G RGGR     G RG GRG
Sbjct: 143 GGRSGGGRSGGGRGGRFDSGRG-GGRGRFGSGGRGGDRGGRGGSGGGGRG-GRG 298



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 19/39 (48%), Positives = 19/39 (48%)
 Frame = +2

Query: 581 RGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGR 619
           RG R   GRG G    G  GRGG   G G    G RGGR
Sbjct: 179 RGGRFDSGRGGGRGRFGSGGRGGDRGGRGGSGGGGRGGR 295



 Score = 36.2 bits (82), Expect = 0.016
 Identities = 28/57 (49%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +2

Query: 582 GARAAGGRG-RGDRARGG-RGR---GGRARGEGAPAEGARGGRARGPRGR--RGAGR 631
           G R+ GGRG R D  RGG RGR   GGR    G    G  GG  RG RG   R AG+
Sbjct: 158 GGRSGGGRGGRFDSGRGGGRGRFGSGGRGGDRG--GRGGSGGGGRGGRGTPLRAAGK 322


>TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partial
           (13%)
          Length = 611

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 34/85 (40%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
 Frame = +3

Query: 565 RSNAFIGTQGVAFAAVRGARAAGGRGRGDRARG-GRGRGGRARGEGAPAEGAR------- 616
           R   F    G+ +    G    GGRG G R RG GRGRG   RG G    GA+       
Sbjct: 3   RGRGFYNNGGMEYGG--GDGWDGGRGYGGRGRGFGRGRGRGFRGRGRGGYGAQPVGYYDY 176

Query: 617 -------GGRARGPRGRRGAGRGRG 634
                    R RG RGR G GRGRG
Sbjct: 177 GEYDAPPAPRGRG-RGRGGRGRGRG 248



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 26/58 (44%)
 Frame = +3

Query: 581 RGARAAGGRGRGDRARG--------------------------GRGRGGRARGEGAPA 612
           RG     GRGRG R RG                          GRGRGGR RG G  A
Sbjct: 84  RGRGFGRGRGRGFRGRGRGGYGAQPVGYYDYGEYDAPPAPRGRGRGRGGRGRGRGRNA 257


>BI420016 
          Length = 559

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 28/59 (47%), Positives = 29/59 (48%), Gaps = 6/59 (10%)
 Frame = -1

Query: 581 RGARAAGGRGRGDRARGGRGRGGRA------RGEGAPAEGARGGRARGPRGRRGAGRGR 633
           RG R  GG  R  R R   GRGGR       R   +   G RGGR RG R RRG  RGR
Sbjct: 445 RGQRGGGGGQRRGRCRRASGRGGRIGSRRGRRRRRSRRRGRRGGRERGVRSRRGR-RGR 272



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 30/61 (49%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = -1

Query: 581 RGARAAGGRGRGDRARGGR-----GRGGRARGEGAPAEGARGGRA---RGPRGRRGAGRG 632
           R     GGRGRG R  GGR     G GG+ RG    A G RGGR    RG R RR   RG
Sbjct: 502 RRGGGGGGRGRGRREEGGRRGQRGGGGGQRRGRCRRASG-RGGRIGSRRGRRRRRSRRRG 326

Query: 633 R 633
           R
Sbjct: 325 R 323



 Score = 36.6 bits (83), Expect = 0.013
 Identities = 22/46 (47%), Positives = 24/46 (51%)
 Frame = -1

Query: 587 GGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRG 632
           GG  R     GGRGRG R  G      G  GG+ RG R RR +GRG
Sbjct: 514 GGCCRRGGGGGGRGRGRREEGGRRGQRGGGGGQRRG-RCRRASGRG 380



 Score = 32.7 bits (73), Expect = 0.18
 Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 578 AAVRGARAAGGRGRGDRARGGRG-RGGRARGEGAPAEGARGGRARGPRG-RRGAGRGRG 634
           A+ RG R    RGR  R    RG RGGR RG  +   G RG R+    G  RG+G G G
Sbjct: 394 ASGRGGRIGSRRGRRRRRSRRRGRRGGRERGVRS-RRGRRGRRSESWGGWWRGSGCGNG 221


>TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Arabidopsis
           thaliana;}, partial (55%)
          Length = 1389

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 50/164 (30%), Positives = 65/164 (39%), Gaps = 21/164 (12%)
 Frame = +2

Query: 493 ATYPGE------AVEDYMRWYNAVSHRFIIPDDRREEFSAVTVMRRAVDLLEQSLEVSDA 546
           A +PG       ++E   + Y +     +  DD +E FS V  ++R     ++S   S  
Sbjct: 350 AAFPGHGGGRASSIETGTKLYISNLDYGVSSDDIKELFSEVGDLKRHTVHYDRSGR-SKG 526

Query: 547 PAEGTHSRSLTERALDLIRSNA----------FIGTQGVAFAAVRGARAAGGRGRGDRAR 596
            AE   SR     A     +N            +GT     A    A  A G   G   R
Sbjct: 527 TAEVVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAPAANGAFGNSNGV-PR 703

Query: 597 GGRGRGG-----RARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
            G+GRGG     R  G+G    G R GR RG    RG GRGRGE
Sbjct: 704 SGQGRGGAFGRLRGGGDGGRGRGHRRGRGRG----RGHGRGRGE 823



 Score = 30.4 bits (67), Expect = 0.90
 Identities = 21/47 (44%), Positives = 25/47 (52%), Gaps = 6/47 (12%)
 Frame = +2

Query: 573 QGVAFAAVRGARAAGGRGRGDR-----ARG-GRGRGGRARGEGAPAE 613
           +G AF  +RG    GGRGRG R      RG GRGRG +   E   A+
Sbjct: 716 RGGAFGRLRGG-GDGGRGRGHRRGRGRGRGHGRGRGEKVSAEDLDAD 853


>BP067482 
          Length = 291

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 1/87 (1%)
 Frame = +2

Query: 221 FYTPGRGERDECAALCAQLMGGSVG-IYEAEFDTNRSQTIRFGVLQTRYEAALAEHRYED 279
           F++ G   R+E A   AQL+   +  I   EFD  R  ++RF  LQ   E  +  +    
Sbjct: 23  FFSFGNPTREEAAPAVAQLLDVDIETI**EEFDACRGPSLRFSFLQAIVETHVEANNEVP 202

Query: 280 AARIWLVNQLGATLFASKSGGYHTTVY 306
           A R +++  +G TL   KS  Y   VY
Sbjct: 203 ACRAYMLRWIGMTLVCDKSNTYIGAVY 283


>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
           (66%)
          Length = 481

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 42/142 (29%), Positives = 57/142 (39%), Gaps = 7/142 (4%)
 Frame = +3

Query: 500 VEDYMRWYN-AVSHRFIIPDDRREEFSA--VTVMRRAVDLLEQSLEVSDAPAEGTHSRSL 556
           V   ++W+N      FI PDD  ++       +       L +  +V    A     R+ 
Sbjct: 48  VNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDPDGRA- 224

Query: 557 TERALDLIRSN--AFIGTQ--GVAFAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPA 612
             +A+++   N  A  GT+  G A    RG    GG G G    GG GRGG   G G   
Sbjct: 225 --KAIEVTGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGY 398

Query: 613 EGARGGRARGPRGRRGAGRGRG 634
            G+ G    G  G  G G GRG
Sbjct: 399 GGSGGYGGGGGYGGGGRGGGRG 464



 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 23/53 (43%), Positives = 23/53 (43%)
 Frame = +3

Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
           G    GG G G    GGRG GG   G G    G  GG      G RG GRG G
Sbjct: 312 GGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGRGGG 470


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,485,664
Number of Sequences: 28460
Number of extensions: 153858
Number of successful extensions: 2042
Number of sequences better than 10.0: 188
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of query: 635
length of database: 4,897,600
effective HSP length: 96
effective length of query: 539
effective length of database: 2,165,440
effective search space: 1167172160
effective search space used: 1167172160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)