TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0041.7
         (1610 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                              115  4e-26
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi...    72  9e-13
AV427422                                                               61  1e-09
BI417841                                                               59  8e-09
BF177840                                                               54  2e-07
TC18698                                                                51  2e-06
AU089582                                                               35  7e-05
TC13259                                                                39  0.006
BP065719                                                               35  0.093
AV410371                                                               31  1.8
AV406689                                                               30  3.0
BP046302                                                               30  3.0
TC8082 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-...    30  3.0
TC14153 weakly similar to UP|P93333 (P93333) PR10-1 protein (Cla...    28  8.7

>BG662087 
          Length = 373

 Score =  115 bits (289), Expect = 4e-26
 Identities = 58/122 (47%), Positives = 81/122 (65%)
 Frame = +1

Query: 645 NGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAKEDVS 704
           +GK R+ +D+ DLN A PKD Y +P  + +VD A+ +E LSL+D YSGY+QI +   D  
Sbjct: 13  SGKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDED 192

Query: 705 KTAFRCSGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRD 764
           KTAF    A   Y +  +PFGLKNAGATYQ +M+ +F D +   M+VY+D+++VKS  R 
Sbjct: 193 KTAFMT--ARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRA 366

Query: 765 EH 766
            H
Sbjct: 367 NH 372


>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
            (Fragment), partial (10%)
          Length = 572

 Score = 71.6 bits (174), Expect = 9e-13
 Identities = 33/96 (34%), Positives = 52/96 (53%)
 Frame = +2

Query: 1384 DQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISLIKKHVGRKPKSWHE 1443
            + G  F  ++   F +  GI++  S   + Q NGQ EAANK+++  IK+ +      W +
Sbjct: 8    ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187

Query: 1444 SLSQVLWAYRNSPREATGTTPFRLAYGQEAVLPAEV 1479
             L  VLW+Y   P+ +   TPF L YG + +LP E+
Sbjct: 188  ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295


>AV427422 
          Length = 417

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 33/133 (24%), Positives = 66/133 (48%), Gaps = 1/133 (0%)
 Frame = +1

Query: 1333 SRQHKYIIVAIDYFIKWVEAIPLQS-VTQETVIEFIQNHIVYRFGLPESLTTDQGTMFVG 1391
            S+ ++ ++V +D   K+   +PL+   T + + +     +V   G+P S+ +D+  +F+ 
Sbjct: 19   SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198

Query: 1392 RKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISLIKKHVGRKPKSWHESLSQVLWA 1451
                   +  G KL  S  Y+ +++GQ E  N+ L + ++  +  +PKSW   +    + 
Sbjct: 199  NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378

Query: 1452 YRNSPREATGTTP 1464
            Y  S   +TG TP
Sbjct: 379  YNTSYHVSTGQTP 417


>BI417841 
          Length = 617

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 29/85 (34%), Positives = 50/85 (58%)
 Frame = +1

Query: 1071 SNNESEYEALVSGLEILLALGAKNVEVKGDSELVVKQLTKEYKCISKNLAKYYVKAMSLL 1130
            +NN++EY  L+ GL+     G +++ VKGDS+LV KQ+   +K  + N+A    +A  L 
Sbjct: 253  TNNQAEYRGLILGLKHAHEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELK 432

Query: 1131 ANFDQAGVSYIPRVSNQEANELAQI 1155
            + F    ++++PR  N EA+  A +
Sbjct: 433  SKFQSFDINHVPRQYNSEADVQANL 507


>BF177840 
          Length = 410

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/100 (29%), Positives = 46/100 (46%)
 Frame = +2

Query: 1380 SLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILISLIKKHVGRKPK 1439
            S+ +D+ T F+           G KLL S   + Q +GQ E  NK L +L++  + R  K
Sbjct: 14   SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193

Query: 1440 SWHESLSQVLWAYRNSPREATGTTPFRLAYGQEAVLPAEV 1479
             W   L  + +AY       T  +PF + YG   + P ++
Sbjct: 194  MWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313


>TC18698 
          Length = 808

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 25/56 (44%), Positives = 35/56 (61%)
 Frame = -2

Query: 717 YEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDLVVKSPSRDEHLSHLRK 772
           Y + VMP GLKN   TYQR+M+ IFH  I   ++VY++D++VKS     H   L +
Sbjct: 771 YYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FHRGDLSR 604


>AU089582 
          Length = 383

 Score = 35.4 bits (80), Expect(2) = 7e-05
 Identities = 18/63 (28%), Positives = 33/63 (51%)
 Frame = +2

Query: 1369 NHIVYRFGLPESLTTDQGTMFVGRKVAAFAESWGIKLLTSIPYYAQANGQVEAANKILIS 1428
            + IV   G+P S+ +D+G  F      +F  + G +L  S  ++ Q +GQ E   +IL  
Sbjct: 38   DEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTIQILED 217

Query: 1429 LIK 1431
            +++
Sbjct: 218  MLR 226



 Score = 29.3 bits (64), Expect(2) = 7e-05
 Identities = 14/37 (37%), Positives = 19/37 (50%)
 Frame = +3

Query: 1440 SWHESLSQVLWAYRNSPREATGTTPFRLAYGQEAVLP 1476
            SW + LS + +AY NS R +    PF   YG+    P
Sbjct: 252  SWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSP 362


>TC13259 
          Length = 506

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 29/82 (35%), Positives = 44/82 (53%)
 Frame = +1

Query: 1075 SEYEALVSGLEILLALGAKNVEVKGDSELVVKQLTKEYKCISKNLAKYYVKAMSLLANFD 1134
            SE  AL  GL++ L LG   VEV+ D+++VV       K +S  LA      + +   F 
Sbjct: 109  SEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKKHVSY-LANVIADVVRISQCFR 285

Query: 1135 QAGVSYIPRVSNQEANELAQIA 1156
               ++Y+PR+S+  A+ LAQ A
Sbjct: 286  FFSLAYVPRLSHLAADYLAQFA 351


>BP065719 
          Length = 567

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 25/49 (51%), Positives = 27/49 (55%)
 Frame = +1

Query: 1   *V*RIWLASKERMPNLLMTT*IDSGC*NLDPLLMSQNMNWLFWPQVV*S 49
           *V R WL SKE   +LLM T*   GC NLD   M  N + L    VV*S
Sbjct: 421 *VXRTWLVSKESQQSLLMIT*TGLGCLNLDASPMCLNTS*LS*XLVV*S 567


>AV410371 
          Length = 347

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 321 NPTQEKVKVAARDEDEDMLEDFDESDGEDLNI---ICIDDKAIFQRPSEHM 368
           NP       + +D+DEDM+ED D+   ED      +  DD+ IF+    +M
Sbjct: 195 NPNGSNFDNSCQDDDEDMVEDDDDDADEDPGYDTDLYYDDEDIFEDDYSNM 347


>AV406689 
          Length = 418

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +3

Query: 110 STRTTRSPPKS---TLMTSIWLSSSQETLMCARH*S 142
           S+RTTRSPP+S      T++W S+S  T   A +*S
Sbjct: 180 SSRTTRSPPRS*FNLFPTALWFSASPPTSTAA*N*S 287


>BP046302 
          Length = 435

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/80 (17%), Positives = 35/80 (43%)
 Frame = +3

Query: 194 LNRRKAKNTVSITTFLATGPHNVFVSGTLFKEHWILVGSSTAKRLKAKQRSTQIHSRKRS 253
           +  + + + V++   +  G H +   G+ ++ HW  +G      ++    +  +H    S
Sbjct: 150 VTNQASNSDVNLCKRVTYGTHQLTDIGSTYRSHWRAIGGIECPGVRWSSNAIFLHPMVES 329

Query: 254 TPKLEKLLSSSYLEAKMEKR 273
            P  E ++    +E +M+ R
Sbjct: 330 LPMKELVVVVGRMEVRMKVR 389


>TC8082 similar to UP|Q8H9E8 (Q8H9E8) Resistant specific protein-3, partial
            (54%)
          Length = 1913

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 9/46 (19%)
 Frame = +1

Query: 1492 IPSEVYWNMMLD---------ELVNLDEERVLALDVLTRQKDRIAK 1528
            +P E+YW MML          EL+  D      +D  T+ KD+I+K
Sbjct: 97   LPPEIYWKMMLPSTPMPKAVIELLRGDVSIETCVDTYTQSKDKISK 234


>TC14153 weakly similar to UP|P93333 (P93333) PR10-1 protein (Class 10 PR
           protein), partial (97%)
          Length = 754

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 369 KSHLKPLFVWAKVEDKGVNKI 389
           KSHL+P+++W ++ED+  N I
Sbjct: 387 KSHLRPIWLWVQMEDQLQNTI 449


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,689,942
Number of Sequences: 28460
Number of extensions: 361690
Number of successful extensions: 2149
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2146
length of query: 1610
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1507
effective length of database: 1,966,220
effective search space: 2963093540
effective search space used: 2963093540
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)