BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0041.4
(266 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14559 weakly similar to UP|Q9SUD4 (Q9SUD4) Senescence-associat... 453 e-128
TC15414 weakly similar to UP|O81655 (O81655) Senescence-associat... 290 2e-79
BP041245 156 4e-39
AV419126 139 6e-34
BP039200 130 2e-31
TC15413 similar to UP|Q9SUD4 (Q9SUD4) Senescence-associated prot... 100 4e-26
TC12216 similar to GB|AAP13420.1|30023774|BT006312 At3g45600 {Ar... 106 4e-24
TC9566 weakly similar to UP|Q9FIQ5 (Q9FIQ5) Senescence-associate... 85 1e-17
TC17580 weakly similar to UP|Q9SUD4 (Q9SUD4) Senescence-associat... 69 1e-12
TC16331 similar to GB|AAN64534.1|24797044|BT001143 At5g12410/At5... 31 0.19
TC19796 30 0.32
TC17711 30 0.55
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos... 29 0.72
TC20146 weakly similar to UP|Q940P5 (Q940P5) At2g20740/F5H14.29,... 29 0.94
TC14001 similar to UP|Q8LGE9 (Q8LGE9) CMP-sialic acid transporte... 28 1.6
TC8648 similar to UP|Q93Y55 (Q93Y55) Delta-1-pyrroline-5-carboxy... 28 2.1
AV777810 27 2.7
BP079234 27 2.7
AV779515 27 4.7
TC18232 similar to UP|Q7PS48 (Q7PS48) ENSANGP00000015589 (Fragme... 27 4.7
>TC14559 weakly similar to UP|Q9SUD4 (Q9SUD4) Senescence-associated
protein-like, partial (92%)
Length = 1125
Score = 453 bits (1165), Expect = e-128
Identities = 204/268 (76%), Positives = 239/268 (89%), Gaps = 2/268 (0%)
Frame = +2
Query: 1 MVRLSNNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFLLLVSLAG 60
MV+ SN++IG+LN LTL+LSIPIL+ GVWLSKQ T+CERWLE+P+IALGVFLL+VSLAG
Sbjct: 119 MVKFSNSVIGILNLLTLVLSIPILIAGVWLSKQANTECERWLEKPVIALGVFLLIVSLAG 298
Query: 61 LVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSN 120
L+GACCRVSWLLWVYLLVMF+LIVL+FAFTIFAF VTNKGAGEALS +GY+EYRLG YS+
Sbjct: 299 LIGACCRVSWLLWVYLLVMFVLIVLLFAFTIFAFVVTNKGAGEALSNKGYKEYRLGGYSD 478
Query: 121 WLQKRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKPSNDCG 180
WLQKRVN+ NWNRIRSCL SGK+CS+F+++F+NDT ++FY ENLSALQSGCCKPS+DC
Sbjct: 479 WLQKRVNNDNNWNRIRSCLQSGKVCSDFKSKFLNDTVDKFYTENLSALQSGCCKPSDDCN 658
Query: 181 FTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVNVI 240
FTY+ P+ W K Y+N DC AW+ND +LCFNCQSCKAGLLQNIKTDWKKVAVVN+I
Sbjct: 659 FTYENPTTWTKPANATYTNTDCDAWNNDQTILCFNCQSCKAGLLQNIKTDWKKVAVVNII 838
Query: 241 FLVFLIIVYSIGCCAFRNNR--NDNWKR 266
FL+FLIIVYS+GCCAFRN+R N NWKR
Sbjct: 839 FLIFLIIVYSVGCCAFRNSRRDNSNWKR 922
>TC15414 weakly similar to UP|O81655 (O81655) Senescence-associated protein
5, partial (47%)
Length = 448
Score = 290 bits (742), Expect = 2e-79
Identities = 137/137 (100%), Positives = 137/137 (100%)
Frame = +1
Query: 56 VSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRL 115
VSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRL
Sbjct: 37 VSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRL 216
Query: 116 GDYSNWLQKRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKP 175
GDYSNWLQKRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKP
Sbjct: 217 GDYSNWLQKRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKP 396
Query: 176 SNDCGFTYQGPSVWNKT 192
SNDCGFTYQGPSVWNKT
Sbjct: 397 SNDCGFTYQGPSVWNKT 447
>BP041245
Length = 516
Score = 156 bits (394), Expect = 4e-39
Identities = 75/147 (51%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Frame = +1
Query: 2 VRLSNNLIGLLNFLTLLLSIPILVTGVWLSKQPG-TDCERWLERPIIALGVFLLLVSLAG 60
+R SN+LIG+LNFLT LLSIPIL G+WLS + TDC ++L+ P+I +GV +++VSLAG
Sbjct: 70 MRTSNHLIGVLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAG 249
Query: 61 LVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSN 120
GAC R ++L+ +YL+VMFL+I ++ F IFA+ VT+KG+G + RGY +Y L DYS
Sbjct: 250 FAGACYRNTFLMRLYLVVMFLVIAVLIGFIIFAYVVTDKGSGRRVLNRGYMDYYLQDYSG 429
Query: 121 WLQKRVNSTGNWNRIRSCLGSGKLCSE 147
WL++RV S W +I SC+ K+C++
Sbjct: 430 WLEERVASHSYWGKIASCVRDSKVCAK 510
>AV419126
Length = 230
Score = 139 bits (349), Expect = 6e-34
Identities = 76/98 (77%), Positives = 76/98 (77%)
Frame = +2
Query: 6 NNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFLLLVSLAGLVGAC 65
NNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFL
Sbjct: 2 NNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFL------------ 145
Query: 66 CRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGE 103
LLVMFLLIVLVFAFTIFAFAVTNKGAGE
Sbjct: 146 ----------LLVMFLLIVLVFAFTIFAFAVTNKGAGE 229
>BP039200
Length = 553
Score = 130 bits (328), Expect = 2e-31
Identities = 57/132 (43%), Positives = 80/132 (60%)
Frame = -1
Query: 132 WNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKPSNDCGFTYQGPSVWNK 191
W+ IRSCL +C+E F A+ F+ L+ +QSGCCKP C +T+ P+ W
Sbjct: 553 WDHIRSCLSQTNMCAELNQSF--RMAQDFFNARLTPMQSGCCKPPTQCAYTFVNPTYWIS 380
Query: 192 TEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSI 251
++ DC W ND LC+ C SCKAGLL N++ +WK+ VV +I LV LI+VY +
Sbjct: 379 PINTA-ADMDCLQWSNDQTQLCYGCDSCKAGLLANLRKEWKRAXVVLIITLVVLIVVYMV 203
Query: 252 GCCAFRNNRNDN 263
GCCAFRN + ++
Sbjct: 202 GCCAFRNAKTED 167
>TC15413 similar to UP|Q9SUD4 (Q9SUD4) Senescence-associated protein-like,
partial (15%)
Length = 564
Score = 99.8 bits (247), Expect(2) = 4e-26
Identities = 46/47 (97%), Positives = 47/47 (99%)
Frame = +3
Query: 220 KAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDNWKR 266
+AGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDNWKR
Sbjct: 48 QAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDNWKR 188
Score = 34.3 bits (77), Expect(2) = 4e-26
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 204 AWDNDPNVLCFNCQS 218
AWDNDP +LCFNC S
Sbjct: 1 AWDNDPMLLCFNCHS 45
>TC12216 similar to GB|AAP13420.1|30023774|BT006312 At3g45600 {Arabidopsis
thaliana;}, partial (30%)
Length = 570
Score = 106 bits (265), Expect = 4e-24
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Frame = +2
Query: 170 SGCCKPSNDCGFTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKT 229
S + + DCG+ YQ +VWN G+ +NPDC W ND LC+ C SCKAG+L ++K
Sbjct: 5 SARARAATDCGYIYQNETVWNLGSGLMSANPDCSKWSNDQGFLCYRCDSCKAGVLASLKK 184
Query: 230 DWKKVAVVNVIFLVFLIIVYSIGCCAFRNN-RNDN 263
W+KV+V+N++ ++ L+IVY I A+RNN R DN
Sbjct: 185 SWRKVSVINIVVMIILVIVYIIAYAAYRNNKRMDN 289
>TC9566 weakly similar to UP|Q9FIQ5 (Q9FIQ5) Senescence-associated protein
5-like protein, partial (28%)
Length = 675
Score = 85.1 bits (209), Expect = 1e-17
Identities = 36/82 (43%), Positives = 57/82 (68%), Gaps = 1/82 (1%)
Frame = +1
Query: 183 YQGPSVWNKTEGVN-YSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVNVIF 241
+ P +W TE VN ++PDC+ W+ND N LC+NC +CKAGLL N++ +W+K ++ ++
Sbjct: 1 FVSPILW--TEPVNPMADPDCNLWNNDQNQLCYNCNACKAGLLGNLRKEWRKANIILIVA 174
Query: 242 LVFLIIVYSIGCCAFRNNRNDN 263
+V LI VY I C AF+N + ++
Sbjct: 175 VVVLICVYIIACSAFKNAQTED 240
>TC17580 weakly similar to UP|Q9SUD4 (Q9SUD4) Senescence-associated
protein-like, partial (12%)
Length = 526
Score = 68.6 bits (166), Expect = 1e-12
Identities = 25/62 (40%), Positives = 38/62 (60%)
Frame = +3
Query: 201 DCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNR 260
DC WDN + LC++C +CK G L NI+ W+ + + N + L + +Y +GC A +NNR
Sbjct: 30 DCKTWDNKQDKLCYDCNACKGGFLPNIRNQWRHLTIFNGLVLALVTTIYVLGCYAIKNNR 209
Query: 261 ND 262
D
Sbjct: 210 WD 215
>TC16331 similar to GB|AAN64534.1|24797044|BT001143 At5g12410/At5g12410
{Arabidopsis thaliana;}, partial (42%)
Length = 932
Score = 31.2 bits (69), Expect = 0.19
Identities = 11/30 (36%), Positives = 21/30 (69%)
Frame = +3
Query: 13 NFLTLLLSIPILVTGVWLSKQPGTDCERWL 42
N++ LL+ +P+LV + +Q GT C++W+
Sbjct: 156 NWIVLLMRMPVLVKKLREMRQMGTKCQKWI 245
>TC19796
Length = 522
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 55 LVSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSG 107
L S G V C W W +L LL + + ++F+F+ G LSG
Sbjct: 32 LFSARGFVSPSCFAVWFFWGFLWRFGLLFLGLVPISLFSFSFRGAGVFGRLSG 190
>TC17711
Length = 677
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 46 IIALGVFLLLVSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNK 99
++ +GV LL +G CCRV W+L ++ +L + F+F +F + +K
Sbjct: 331 LLVIGVLSLLGHWR--LGCCCRVCWMLCSWI----VLFMQSFSFAVFPSCIHDK 474
>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
clone: MSJ11, partial (39%)
Length = 1403
Score = 29.3 bits (64), Expect = 0.72
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 54 LLVSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAF 94
+L SL L+G C L+ + + ++ +++L+F +IF+F
Sbjct: 602 ILCSLLILIGICSLCFLLILIDICILCFVLILIFLHSIFSF 480
>TC20146 weakly similar to UP|Q940P5 (Q940P5) At2g20740/F5H14.29, partial
(45%)
Length = 417
Score = 28.9 bits (63), Expect = 0.94
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Frame = +1
Query: 1 MVRLSNNLIGLLNFLTLLLSIPIL-VTGVWLSKQP-GTDCER---WLERPIIALGVFLLL 55
+++L N+++G+ +L S ++ V + + P G D + W ++ LGV +
Sbjct: 133 ILKLVNSVMGMAGLAMILYSAWMMRVRQRQMGELPFGHDSDNPPPWFIYTLLGLGVTFCV 312
Query: 56 VSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFT 90
++ G V A L++Y++ + LLI+L A T
Sbjct: 313 ITCPGHVAAETANGCCLYLYMVFVVLLIMLEAAVT 417
>TC14001 similar to UP|Q8LGE9 (Q8LGE9) CMP-sialic acid transporter-like
protein, partial (43%)
Length = 497
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +3
Query: 217 QSCKAGLLQNIKTDWKKVAVVNVIFLVFLI 246
+ CK+ L + TDWK VA+ + +++LI
Sbjct: 186 RECKSSPLPKMTTDWKTVALYPIPSVIYLI 275
>TC8648 similar to UP|Q93Y55 (Q93Y55) Delta-1-pyrroline-5-carboxylate
dehydrogenase , partial (88%)
Length = 1689
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/96 (26%), Positives = 36/96 (37%)
Frame = +3
Query: 143 KLCSEFRNRFVNDTAEQFYAENLSALQSGCCKPSNDCGFTYQGPSVWNKTEGVNYSNPDC 202
KL E R T AE L+ G K D GF + K G + D
Sbjct: 609 KLLLEANPRMTLFTGSSRVAEKLAGDLKGRIK-LEDAGFDW-------KILGPDVHQEDY 764
Query: 203 HAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVN 238
AW D + + Q C A L + +W K ++++
Sbjct: 765 IAWVCDQDAYACSGQKCSAQSLLFVHENWSKTSLIS 872
>AV777810
Length = 373
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 60 GLVGACCRVSWLLWVYLLVMFLLIVLVFAF 89
GL G CCR + VYL V FL+++ + +
Sbjct: 253 GLNGVCCRSIIIENVYLKVYFLMVIALLFY 342
>BP079234
Length = 459
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/39 (30%), Positives = 17/39 (42%)
Frame = -1
Query: 11 LLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIAL 49
+L+ L+ + T VWL ERWL P + L
Sbjct: 189 MLSLFVLVCHVKFFNTTVWLPNLVSLGAERWLRSPSVLL 73
>AV779515
Length = 565
Score = 26.6 bits (57), Expect = 4.7
Identities = 11/17 (64%), Positives = 15/17 (87%)
Frame = +3
Query: 236 VVNVIFLVFLIIVYSIG 252
V+N+IF+ FLIIV S+G
Sbjct: 165 VMNIIFIDFLIIVISVG 215
>TC18232 similar to UP|Q7PS48 (Q7PS48) ENSANGP00000015589 (Fragment),
partial (8%)
Length = 907
Score = 26.6 bits (57), Expect = 4.7
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +1
Query: 170 SGCCKPSNDCGFTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSC 219
S CC P D G P+ T + P C+ W +P CF + C
Sbjct: 277 SYCCFPCQDFGPKIPPPAWRASTFLCSL*FPHCYLWTTEPL*ACFLPRLC 426
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.141 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,679,774
Number of Sequences: 28460
Number of extensions: 116831
Number of successful extensions: 889
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of query: 266
length of database: 4,897,600
effective HSP length: 89
effective length of query: 177
effective length of database: 2,364,660
effective search space: 418544820
effective search space used: 418544820
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0041.4