TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0041.13
         (130 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10344                                                               180  6e-47
TC14418 weakly similar to GB|AAB62722.1|2232239|AF005037 secreto...   142  2e-35
TC17557 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, par...   135  2e-33
AV413537                                                               58  6e-10
AU088887                                                               28  0.39
AV416299                                                               28  0.50
TC11158 similar to UP|Q39682 (Q39682) Glycine-rich protein (Frag...    26  1.9
BP054137                                                               25  3.3
TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, ...    25  3.3
TC11802 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, pa...    25  3.3
TC11085 similar to GB|AAP13430.1|30023794|BT006322 At3g54390 {Ar...    25  3.3
AW719957                                                               25  3.3
TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)             25  4.3
TC14068 homologue to UP|Q9SLR7 (Q9SLR7) Thiamin biosynthetic enz...    25  4.3
BI417739                                                               25  4.3
TC10027 similar to UP|Q9SL62 (Q9SL62) At2g20190 protein, partial...    25  5.6
TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana ...    25  5.6
TC13210 similar to UP|Q9M0V1 (Q9M0V1) D123-like protein, partial...    25  5.6
TC20015                                                                24  7.3
TC17623 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, part...    24  7.3

>TC10344 
          Length = 616

 Score =  180 bits (457), Expect = 6e-47
 Identities = 85/105 (80%), Positives = 96/105 (90%)
 Frame = +1

Query: 12  NSGSVPLATSKLKPLPPEPYDRGATIDIPLDTTKDIKAKEKELQAREAELKRREQELKRK 71
           N GSVP A S+L PL PEPY+ GATIDIPLD++KD KAKEKELQA+E+ELKRREQELKR+
Sbjct: 301 NPGSVPSANSRLSPLSPEPYESGATIDIPLDSSKDTKAKEKELQAKESELKRREQELKRR 480

Query: 72  EDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFIT 116
           EDAIARAGIVIEEKNWPPFFPIIHH+I+ EIP+HLQRIQY+AF T
Sbjct: 481 EDAIARAGIVIEEKNWPPFFPIIHHDIANEIPIHLQRIQYIAFTT 615


>TC14418 weakly similar to GB|AAB62722.1|2232239|AF005037 secretory carrier
           membrane protein {Homo sapiens;} , partial (9%)
          Length = 1269

 Score =  142 bits (357), Expect = 2e-35
 Identities = 68/126 (53%), Positives = 95/126 (74%), Gaps = 4/126 (3%)
 Frame = +2

Query: 6   EMEPARNSGSVPLATSKLKPLPPEPYDRG----ATIDIPLDTTKDIKAKEKELQAREAEL 61
           E+ P  N G+ P + S++ PL  EP   G    AT+DIPLDTT + K K +EL A EA+L
Sbjct: 122 EVNPFSN-GAAPGSKSRIPPLASEPLGFGQRHDATVDIPLDTTNEPKKKGQELAAWEADL 298

Query: 62  KRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWLGML 121
           KRRE++LKR+EDA++RAG+ +++KNWPP FPIIHH+I+ EIP+H QR+QY+AF +WLG++
Sbjct: 299 KRREKDLKRREDAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQRLQYLAFASWLGIV 478

Query: 122 KFLFFS 127
             L F+
Sbjct: 479 LCLVFN 496


>TC17557 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, partial (38%)
          Length = 517

 Score =  135 bits (340), Expect = 2e-33
 Identities = 68/98 (69%), Positives = 80/98 (81%), Gaps = 5/98 (5%)
 Frame = +1

Query: 6   EMEPARNSGSVPLAT-SKLKPLPPEPYDR----GATIDIPLDTTKDIKAKEKELQAREAE 60
           E+ P  N G VP AT S+L PL PEP D     GAT+DIPLDT+ D+K KEKELQ++EAE
Sbjct: 223 EVNPFSNPGRVPPATNSRLSPLKPEPVDYNYGFGATVDIPLDTSNDLKNKEKELQSKEAE 402

Query: 61  LKRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHEI 98
           LKRREQE++R+E+A ARAGIVIEEKNWPPFFPIIHH+I
Sbjct: 403 LKRREQEVRRREEAAARAGIVIEEKNWPPFFPIIHHDI 516


>AV413537 
          Length = 428

 Score = 57.8 bits (138), Expect = 6e-10
 Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 4/50 (8%)
 Frame = +1

Query: 12  NSGSV-PLATSKLKPLPPEPYDR---GATIDIPLDTTKDIKAKEKELQAR 57
           N GSV P + S+L PL PEP D    GAT+DIPLD++KD+K KEKELQA+
Sbjct: 277 NPGSVAPASNSRLAPLNPEPADYNYFGATVDIPLDSSKDLKKKEKELQAK 426


>AU088887 
          Length = 634

 Score = 28.5 bits (62), Expect = 0.39
 Identities = 29/94 (30%), Positives = 42/94 (43%), Gaps = 14/94 (14%)
 Frame = +3

Query: 38  DIPLDTTKD-IKAKEKELQAREAELKRREQEL------KRKED----AIARAGIVIEEKN 86
           D+   T KD + AK  E+   +  L+ R+ EL      +R +D    AI   G +  EKN
Sbjct: 132 DLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGELVERDDDLEIQAINHLGEISFEKN 311

Query: 87  WPPFFPIIHHEISKE---IPLHLQRIQYVAFITW 117
            P  FP++   IS E     + +    Y  FI W
Sbjct: 312 LPHLFPLLSSLISCEHGSTEVXVXSX*YAKFIXW 413


>AV416299 
          Length = 403

 Score = 28.1 bits (61), Expect = 0.50
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 38  DIPLDTTKDIKAKEKE----LQAREAELKRREQELKRKEDAIARAGIVIEEKN 86
           D+ +    +I ++ ++    LQ+R + +K+   E+KRK  A+     V EEKN
Sbjct: 99  DVDIQDLGEISSEAQQYILNLQSRLSSMKKELHEVKRKNAALQMQQFVGEEKN 257


>TC11158 similar to UP|Q39682 (Q39682) Glycine-rich protein (Fragment),
           partial (22%)
          Length = 357

 Score = 26.2 bits (56), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 88  PPFFPIIHHEISKEIPLHLQR 108
           PPFF + HH  S ++ LH +R
Sbjct: 276 PPFFILHHHHHSDQLQLHPRR 338


>BP054137 
          Length = 474

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +1

Query: 5   SEMEPARNSGSVPLATSKLKPLPPEPYDRGATIDIPLDTT 44
           S + P R     PL +S L PLPP P  R  T  I +DTT
Sbjct: 334 SPLLPLRCRHHSPLPSSPLLPLPPPP-PRSITATI-VDTT 447


>TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, partial
           (57%)
          Length = 1280

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 28/93 (30%), Positives = 40/93 (42%), Gaps = 23/93 (24%)
 Frame = +1

Query: 4   FSEMEPARNSGS---VPLATSKLKPLPPEPYDRGATIDIP-----LDTTKDI-------- 47
           F E EP +N+ +      + S+ KP P   +   AT D       L+   D         
Sbjct: 115 FHEEEPQQNNAAPSKTDASPSQSKPSPSPTF--AATFDRSNPAAFLERVFDFVSRESDFL 288

Query: 48  --KAKEKELQ-----AREAELKRREQELKRKED 73
             +A EKE+      ARE   K+RE+ELK  E+
Sbjct: 289 ATEAAEKEVASLVRAAREKRKKKREEELKASEE 387


>TC11802 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial (19%)
          Length = 515

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 20/72 (27%), Positives = 32/72 (43%)
 Frame = +2

Query: 21  SKLKPLPPEPYDRGATIDIPLDTTKDIKAKEKELQAREAELKRREQELKRKEDAIARAGI 80
           SK+KPL   P+    ++ +     +  +A +  L   +AE    E  LK  +D I R  +
Sbjct: 104 SKVKPLYRNPFPSSNSMAV-CHRHRSSRATKATLTEIDAE---HEVTLKMFDDLIQRILV 271

Query: 81  VIEEKNWPPFFP 92
                +W PF P
Sbjct: 272 KKATPDWLPFLP 307


>TC11085 similar to GB|AAP13430.1|30023794|BT006322 At3g54390 {Arabidopsis
           thaliana;}, partial (25%)
          Length = 585

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 35  ATIDIPLDTTKDIKAKEKELQAREAELKRREQELKRKE 72
           A + +  + T+    KE E    EAE KR E +LKR E
Sbjct: 132 AEVVVRSEPTRMDTMKEIEKMRVEAEAKRGEMDLKRTE 245


>AW719957 
          Length = 342

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 18  LATSKLKPLPPEPYDRGATIDI 39
           L  SKL PL PE   R ATI+I
Sbjct: 225 LDVSKLHPLSPEVISRQATINI 290


>TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)
          Length = 507

 Score = 25.0 bits (53), Expect = 4.3
 Identities = 14/54 (25%), Positives = 27/54 (49%)
 Frame = +2

Query: 21  SKLKPLPPEPYDRGATIDIPLDTTKDIKAKEKELQAREAELKRREQELKRKEDA 74
           SKL+ L  +       I+  L   KD++A+ ++L+     L+    +L R+ D+
Sbjct: 98  SKLQDLESQATASDQEIETKLRRLKDLEAEAEQLRKTNLRLQMDNSDLARRLDS 259


>TC14068 homologue to UP|Q9SLR7 (Q9SLR7) Thiamin biosynthetic enzyme,
           partial (85%)
          Length = 1494

 Score = 25.0 bits (53), Expect = 4.3
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = +3

Query: 4   FSEMEPARNSGSVPLATSKLKPLPPEPYDRGA 35
           F  M+P+     + +A S   P PP PYD G+
Sbjct: 153 FQSMKPSLRKLCMSMAASSA-PSPPPPYDLGS 245


>BI417739 
          Length = 591

 Score = 25.0 bits (53), Expect = 4.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 15  SVPLATSKLKPLPPEP 30
           S+PL  S LKP PP P
Sbjct: 159 SLPLTASSLKPTPPLP 112


>TC10027 similar to UP|Q9SL62 (Q9SL62) At2g20190 protein, partial (22%)
          Length = 534

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 10/26 (38%), Positives = 13/26 (49%)
 Frame = +2

Query: 79  GIVIEEKNWPPFFPIIHHEISKEIPL 104
           G+     +W PF PI  H   +E PL
Sbjct: 149 GLTAPH*SWSPFMPIESHRPGQEKPL 226


>TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
            subunit 26S ribosomal RNA gene, partial sequence,
            complete
          Length = 6006

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 85   KNWPPFFPIIHHEISKEIPLHLQRIQYV 112
            +N   F+P + HEIS  + L L  ++Y+
Sbjct: 5315 QNQTSFYPFVPHEISVLVELILGHLRYL 5232


>TC13210 similar to UP|Q9M0V1 (Q9M0V1) D123-like protein, partial (51%)
          Length = 577

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 11/23 (47%), Positives = 13/23 (55%)
 Frame = +1

Query: 65  EQELKRKEDAIARAGIVIEEKNW 87
           E ELK KE  +A  G V  + NW
Sbjct: 301 ELELKVKESIVALGGAVFPKLNW 369


>TC20015 
          Length = 599

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (55%), Gaps = 3/32 (9%)
 Frame = +1

Query: 19 ATSKLKPLPPEPYDRGAT---IDIPLDTTKDI 47
          ATSK KP PPE  ++  +   I +PL  T  +
Sbjct: 1  ATSKEKPTPPEEEEKRESQQNIKVPLSWTDSL 96


>TC17623 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (19%)
          Length = 624

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +2

Query: 8   EPARNSGSVPLATSKLKPLPP-----EPYDRGATIDIPLDTTKDIKAKEK 52
           +P   S   P  T  L+PLPP      P  R  T  + L   K ++A+E+
Sbjct: 59  QPPSPSPPTPTTTLLLRPLPPIIQPIHPMLR*YTQQLGL*RRKTVRARER 208


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,172,789
Number of Sequences: 28460
Number of extensions: 25543
Number of successful extensions: 208
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of query: 130
length of database: 4,897,600
effective HSP length: 80
effective length of query: 50
effective length of database: 2,620,800
effective search space: 131040000
effective search space used: 131040000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)