BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0040.3
(441 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC20183 weakly similar to UP|Q9LHY9 (Q9LHY9) ESTs C74322(E30878)... 115 1e-28
BP038008 66 1e-11
TC15957 similar to UP|Q8L3W1 (Q8L3W1) Reduced vernalization resp... 49 2e-06
BP029246 39 0.002
TC18004 38 0.004
BI417933 29 1.4
TC10273 29 1.4
TC11137 similar to GB|CAD59563.1|27368811|OSA535041 PDR-like ABC... 28 3.0
BP042557 28 3.0
TC8386 27 5.1
TC19879 similar to UP|O82657 (O82657) Pyruvate dehydrogenase kin... 27 5.1
TC16790 27 5.1
TC14446 homologue to UP|H2A_LYCES (P25469) Histone H2A, partial ... 27 6.7
AV423046 27 6.7
TC15381 similar to UP|Q9ZST9 (Q9ZST9) Tic22, partial (96%) 27 8.8
BP067804 27 8.8
TC19118 weakly similar to UP|Q84YE8 (Q84YE8) Expressed protein-l... 27 8.8
TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%) 27 8.8
AV770380 27 8.8
>TC20183 weakly similar to UP|Q9LHY9 (Q9LHY9) ESTs C74322(E30878), partial
(14%)
Length = 516
Score = 115 bits (288), Expect(2) = 1e-28
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +3
Query: 314 RPPVPISFIREYLNEKKQTIKLKIEENLWPVEFIYYPEHGSGKLSKGWIQFAKESKLVGG 373
RP VP FIREY N+ +QTI L+ E+ LWPV+ I YP+ GSGKLS+GW++FA +SKLV G
Sbjct: 90 RPRVPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSQGWVEFAGKSKLVVG 269
Query: 374 DVCVFELINKDEENPVLEVHIFKG 397
D CVFELINK E+PVL+VHIF+G
Sbjct: 270 DACVFELINK--EDPVLDVHIFRG 335
Score = 28.1 bits (61), Expect(2) = 1e-28
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 290 EARKYTPKNPSFTVSLKPVIKLAYRP 315
EA K+ NP F V+L P ++ YRP
Sbjct: 14 EANKFNSNNPFFIVNLAPDMEWDYRP 91
>BP038008
Length = 509
Score = 65.9 bits (159), Expect = 1e-11
Identities = 48/160 (30%), Positives = 69/160 (43%), Gaps = 24/160 (15%)
Frame = +2
Query: 122 LEAAELILPNGFMKKYSGGMSNPVFLKAPDNTSWEIHWSKHD-SYFWFQKGWKEFVKYYS 180
L+ L +P + K+ G+SNP+ L P T WE+ W K WK F +YS
Sbjct: 11 LQNGVLRMPRKLVSKHWDGISNPISLLLPGAT-WEVRWEKRGYDVIMLGDEWKNFAMHYS 187
Query: 181 LDHGHLVLFEFKDASH-----FGVHIFDNSTLEIEYP------------------SNENQ 217
LD HL+ F F+ SH F V I ++ YP NEN+
Sbjct: 188 LDVEHLLRFSFRHDSHVRRTQFHVEIHESGMEIDHYPFKQGSADSGEESDKSTDDENENE 367
Query: 218 GEEHNPDQIGDEILLPKKTKPKSPMSLSRPCKKLRTGKSK 257
E H + +K +PKSP+ +SR KK++T +
Sbjct: 368 KEVHVSSR-------HQKKRPKSPLPVSRSPKKVKTNSKE 466
Score = 42.0 bits (97), Expect = 2e-04
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Frame = +2
Query: 8 VQKLPNAFTRKYSGDNMSNPVFLKPLDNISWEINWSKQDSD-IWLQNVWEEFVKLYYLDQ 66
V ++P K+ D +SNP+ L L +WE+ W K+ D I L + W+ F Y LD
Sbjct: 23 VLRMPRKLVSKH-WDGISNPISLL-LPGATWEVRWEKRGYDVIMLGDEWKNFAMHYSLD- 193
Query: 67 GHMVWHLVLFEFKGPS-----KFEVCIFDKNALEIKYLP 100
V HL+ F F+ S +F V I + + +EI + P
Sbjct: 194 ---VEHLLRFSFRHDSHVRRTQFHVEIHE-SGMEIDHYP 298
>TC15957 similar to UP|Q8L3W1 (Q8L3W1) Reduced vernalization response 1,
partial (26%)
Length = 627
Score = 48.9 bits (115), Expect = 2e-06
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 317 VPISFIREYLNEKKQTIKLKIEENLW-PVEFIYYPEHGSGKLSKGWIQFAKESKLVGGDV 375
+P F + LN IKL++ + PV +Y G KLS+GW +F E+ L GDV
Sbjct: 28 LPSCFAEKNLNGXSGFIKLQVADGRQXPVRCLY--RGGRAKLSQGWFEFPLENHLGEGDV 201
Query: 376 CVFELINKDEENPVLEVHIFK 396
CVFEL+ + VL+V +F+
Sbjct: 202 CVFELLR--TRDVVLQVTLFR 258
>BP029246
Length = 455
Score = 38.9 bits (89), Expect = 0.002
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -3
Query: 331 QTIKLKIEENLWPVEFIYYPEHGSGKLSKGWIQFAKESKLVGGDVCVFELINKDEENPVL 390
Q + L+ W + Y+ SG L+ GW FA ++ L DVCV K ++
Sbjct: 450 QDVILRSGNGEWVARYSYHAIRHSGGLTNGWKHFAVDNNLEEFDVCVLTPAGKVNNTLIV 271
Query: 391 EVHIFK 396
+V IF+
Sbjct: 270 DVSIFR 253
>TC18004
Length = 713
Score = 37.7 bits (86), Expect = 0.004
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 373 GDVCVFELINKDEENPVLEVHIFKGFKSRF 402
GDVCVFELI+ +E+ V +VHIFKG S F
Sbjct: 299 GDVCVFELIH--QEDAVFDVHIFKGHCSYF 382
>BI417933
Length = 568
Score = 29.3 bits (64), Expect = 1.4
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 31/105 (29%)
Frame = +2
Query: 25 SNP-VFLKPL--------------DNISWEINWSKQDSDIWLQNVWEEFVKLYYLDQG-- 67
SNP +F+KP+ + + +EIN Q D V F YY +QG
Sbjct: 197 SNPRIFVKPVNPATRFIVVPKRFHEPVGYEINNVVQLQD----PVGNTFNLSYYFNQGDH 364
Query: 68 ------------HMVWHLVL--FEFKGPSKFEVCIFDKNALEIKY 98
H + H V+ F ++G ++F + IFD + EI+Y
Sbjct: 365 RIGAGLFNILSVHEIQHTVMVHFLYRGQARFNIHIFDPFSREIRY 499
>TC10273
Length = 520
Score = 29.3 bits (64), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = +2
Query: 360 GWIQFAKESKLVGGDVCVFELINKDE 385
GW F +++ + GD C+FEL+ + E
Sbjct: 134 GWXAFVRDNDINFGDTCIFELVAQCE 211
>TC11137 similar to GB|CAD59563.1|27368811|OSA535041 PDR-like ABC
transporter {Oryza sativa (japonica cultivar-group);},
partial (15%)
Length = 786
Score = 28.1 bits (61), Expect = 3.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 162 HDSYFWFQKGWKEFVKYYSLDHGH 185
H +F F + W++ + Y L+HGH
Sbjct: 68 HHGWFCFLENWQKHGELYRLEHGH 139
>BP042557
Length = 545
Score = 28.1 bits (61), Expect = 3.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 330 KQTIKLKIEENLWPVEFIYYPEHGSGKLSKGWIQFAKESKLVGGDVCVF 378
++ I + +N W I+ + L+ GW F +LV GD +F
Sbjct: 179 QELIARDLNDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 325
>TC8386
Length = 570
Score = 27.3 bits (59), Expect = 5.1
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 274 EGGEPSSLGPHFTAQGEARKYTPKNPSFTVSLKPVIKLAYRPPVPI-SFIREYLNEKKQT 332
E G +G +GE + +F VS K ++ L RPP+ + + E+ ++ +
Sbjct: 33 EAGYDQQIG---RVEGEKNSMSHNENAFLVSCKSMLYLLRRPPMHFEALVEEHFRQRSKQ 203
Query: 333 IKLKIEENL 341
I L E L
Sbjct: 204 ILLACEAYL 230
>TC19879 similar to UP|O82657 (O82657) Pyruvate dehydrogenase kinase ,
partial (47%)
Length = 614
Score = 27.3 bits (59), Expect = 5.1
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = -2
Query: 49 IWLQNVWEEFVKLYYLDQGHMVWHLVLFEFKGPSKFEVCIFDKNALEIKYLPLSNKQI 106
+++ N+W GH +H+V+ F G F F + L+++ P ++I
Sbjct: 505 VFIYNLWIHTFLQLLNT*GHCRYHIVVSHFDGLDHFSEIFFISHVLDVRVRPKITERI 332
>TC16790
Length = 584
Score = 27.3 bits (59), Expect = 5.1
Identities = 13/42 (30%), Positives = 22/42 (51%)
Frame = +2
Query: 356 KLSKGWIQFAKESKLVGGDVCVFELINKDEENPVLEVHIFKG 397
++ GW +F + + GD+C F+ N E ++EV I G
Sbjct: 302 RIGSGWKKFCTRNGVRAGDLCCFKFTNIAER--IVEVSIVFG 421
>TC14446 homologue to UP|H2A_LYCES (P25469) Histone H2A, partial (94%)
Length = 744
Score = 26.9 bits (58), Expect = 6.7
Identities = 15/35 (42%), Positives = 18/35 (50%)
Frame = +3
Query: 230 ILLPKKTKPKSPMSLSRPCKKLRTGKSKDVGKSPE 264
+LLPKKT K+P P KK GKSP+
Sbjct: 465 VLLPKKTAEKAPKESKSPPKK--------AGKSPK 545
>AV423046
Length = 427
Score = 26.9 bits (58), Expect = 6.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 90 DKNALEIKYLPLSNKQIPNSATRFFRIITPPCLEAAELILP 130
D++ EIKYL L + + N A F+R I E A+ + P
Sbjct: 245 DRDYDEIKYLSLDDDNLANQALAFYRQIKQRRAEEAKNLGP 367
>TC15381 similar to UP|Q9ZST9 (Q9ZST9) Tic22, partial (96%)
Length = 1170
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 216 NQGEEHNPDQIGDEILLPKKTKPKSPMSLSRPCKKLRTGKSKDVGKSPELRKRKKVQ 272
NQ NP I + LLP++T RPC+ + + V + R+++Q
Sbjct: 80 NQATRRNPSSISRQPLLPRQT---------RPCRHINLPPRRQVPRRHRRLHRQQLQ 223
>BP067804
Length = 412
Score = 26.6 bits (57), Expect = 8.8
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +2
Query: 149 APDNTSWE---IHWSKHDSYFWFQKGWKEFVKYYSLDHGHLVLFEFK 192
A +N SW+ IH W Q GWK F K S+ L L K
Sbjct: 215 AGENPSWKNTAIHVETRRP--WLQLGWKRFPKIVSMSSNDLPLVSGK 349
>TC19118 weakly similar to UP|Q84YE8 (Q84YE8) Expressed protein-like
protein, partial (11%)
Length = 932
Score = 26.6 bits (57), Expect = 8.8
Identities = 32/112 (28%), Positives = 51/112 (44%), Gaps = 21/112 (18%)
Frame = +3
Query: 328 EKKQTIKLKIEEN-LWPVEFIYYPEHGSG-KLSKGWIQFAK---------------ESKL 370
+ KQ +K KI+ N + E + P+ G+G KL G + AK E K
Sbjct: 252 KSKQGVKRKIDHNDVVSEENVVDPQVGNGQKLQDGNFKKAKNLAVSMATKAASLARELKS 431
Query: 371 VGGDVCVFE----LINKDEENPVLEVHIFKGFKSRFNFLLRLQLTSIFRLQS 418
+ D+C + L+ +EEN L KG + + L+RLQL ++ +S
Sbjct: 432 IKSDLCFMQERCGLL--EEENRRLRDGFEKGVRPEEDDLVRLQLEALLAEKS 581
>TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%)
Length = 715
Score = 26.6 bits (57), Expect = 8.8
Identities = 12/28 (42%), Positives = 14/28 (49%)
Frame = +3
Query: 230 ILLPKKTKPKSPMSLSRPCKKLRTGKSK 257
+LLPKKT K+P P KK K
Sbjct: 444 VLLPKKTAEKAPKEPKSPAKKAAKSPKK 527
>AV770380
Length = 526
Score = 26.6 bits (57), Expect = 8.8
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = -1
Query: 374 DVCVFELINKDEENPVLEVHIFK 396
DVC FELI K N +VHIF+
Sbjct: 526 DVCTFELIAK--TNNTFQVHIFR 464
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,262,154
Number of Sequences: 28460
Number of extensions: 152378
Number of successful extensions: 752
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of query: 441
length of database: 4,897,600
effective HSP length: 93
effective length of query: 348
effective length of database: 2,250,820
effective search space: 783285360
effective search space used: 783285360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0040.3