TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0039.8
         (415 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    41  4e-04
TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5...    33  0.11
AU089551                                                               29  1.3
TC8691 similar to UP|Q940T5 (Q940T5) AT5g59550/f2o15_210, partia...    29  1.3
TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, ...    28  2.1
AV778674                                                               27  4.8
TC15107 similar to UP|Q8LJP8 (Q8LJP8) Dehydroascorbate reductase...    27  6.2
BP037854                                                               27  6.2
TC11241                                                                27  8.1

>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 46/195 (23%), Positives = 79/195 (39%), Gaps = 20/195 (10%)
 Frame = +3

Query: 4   NNMADLDIYDVIIDDIM------NDTTI-EDMMQEEMEFYQQHANTVRPKRTRKVIKRDR 56
           NN  + ++ D +++D++      +DT   + +M       Q H     P+      K+ R
Sbjct: 99  NNDPEWNLNDTVLNDLLTSFIHFDDTKPHQQLMDPNPIANQSHIEQFEPEFDEPPTKKPR 278

Query: 57  EAGN------ERLW-----KDYFSE--NPVYTEELFRRRFRMQKHVFLRIVGALRSHNPY 103
            +         RLW     KD++    +P + EE FRR FRM K  F  I   L S    
Sbjct: 279 RSDGTATTPPRRLWVKDRSKDWWERCSHPDFPEEEFRRSFRMSKATFEMICRELDS---- 446

Query: 104 FLMSVDEVGRQGLSPLQKCTAVIRMLVYGSPADSVDEYVRIGESTAIECLNFFVEGVCAV 163
            +   + + R+ +   Q+    I  L  G P   V +   +G ST  + +      +  V
Sbjct: 447 AVTKKNTMLREAIPVRQRVAVCIWRLATGDPLRLVAKRFGLGISTCHKLVLEVCSAIKTV 626

Query: 164 FGETYLRRPNQEDIT 178
               +LR P++  +T
Sbjct: 627 LMPKFLRWPDEAAMT 671


>TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980),
           partial (16%)
          Length = 577

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +2

Query: 291 RQKFMKRQEAARKDVERAFNVLQSRFAIVRGPSRFWHPNEMKSIMYACIILHNMIVEDER 350
           ++ F  R    R  + R+F VL++RF I+  P+  +     + I+ A  +LHN+I  ++R
Sbjct: 5   KELFNHRHYFLRGAILRSFTVLKARFPILI-PAPQYSFQIQRDIVIAACVLHNIIRREDR 181

Query: 351 NTY 353
           N +
Sbjct: 182 NDW 190


>AU089551 
          Length = 599

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 4/66 (6%)
 Frame = +3

Query: 343 NMIVEDERNTYRGSARVRIKRAEKTRVVTVRPVVRSGCY----NWYQSRPLPVRCGSGTN 398
           ++ +E+  N+ R   R R  R  +  + T  P+ R  C+    NW Q R L  +CG G  
Sbjct: 96  HIAMEEYTNSTRRELRQRGGRXGRKCMAT-NPIDR--CWRCRKNWAQDRQLLAKCGKGFG 266

Query: 399 QVEVGG 404
           +  VGG
Sbjct: 267 RRAVGG 284


>TC8691 similar to UP|Q940T5 (Q940T5) AT5g59550/f2o15_210, partial (16%)
          Length = 942

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 136 DSVDEYVRIGESTAIECLNFFVEGVCAV 163
           DS+++  +I E T IE LNFF   VC V
Sbjct: 781 DSINKSNQIMEFTEIEALNFFFPNVCLV 698


>TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, partial
           (75%)
          Length = 1031

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 48  TRKVIKRDREAGNERLWKDYFSEN-PVYTEELFRRRFRMQKHVFLRIVGALRSH 100
           + K + R R   N R+ +   SEN P+   +LFR+  R   H+   ++G  RSH
Sbjct: 333 SNKTV*RIRGLWNIRVMRIKESENRPILLSKLFRKTHRFLYHLGNFLIGFCRSH 172


>AV778674 
          Length = 606

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 21/81 (25%), Positives = 39/81 (47%), Gaps = 12/81 (14%)
 Frame = +3

Query: 19  IMNDTTIEDMMQEEMEFYQQH--------ANTVRPKRTRKVIKRDREAGNERLWKDYFS- 69
           + +DTT E  M+EEM+   Q          + V+ +R  K ++R+R    E+  KD ++ 
Sbjct: 120 LTSDTTAEQAMKEEMDTRIQTLEKTVARLRDEVKKEREDKNMERNRRLKTEKAIKDSYNN 299

Query: 70  ---ENPVYTEELFRRRFRMQK 87
              E   +  EL R +  +++
Sbjct: 300 VEQEKKQFINELERHKEALKR 362


>TC15107 similar to UP|Q8LJP8 (Q8LJP8) Dehydroascorbate reductase, partial
           (98%)
          Length = 1132

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
 Frame = +1

Query: 235 VLNQSSVFNEVLSGNAPMVN--------FSVNETMYNMRYYLADGIYPPWA-----TFVK 281
           +L++ S FN+ L  N P VN         S+   +Y++   +A G Y  W      TF+K
Sbjct: 571 LLSELSSFNDYLKDNGPFVNGKDISAADLSLGPKLYHLE--IALGHYKKWTVPDSLTFLK 744

Query: 282 TIPMPQGEKRQKFMKRQEAARKDVE 306
           +  M     R+ F+K +   +  VE
Sbjct: 745 SY-MKAIFSRESFIKTRAQPQDVVE 816


>BP037854 
          Length = 462

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 207 IMLEAVASQDLWIWHAFFGIA 227
           ++  +V + DLW W  FFG A
Sbjct: 282 LIFSSVLALDLWFWELFFGTA 220


>TC11241 
          Length = 552

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 43  VRPKRTRKVIKRDREAGNERLWKDYFSENPVYT--EELFRRRFRMQKHVFLRIVGALRSH 100
           VR   +RK+I+R  E  N     +   E+ +YT   ELF    +  + + + I+ +  + 
Sbjct: 16  VRWAYSRKIIQRQTERPNNCSLINITKEDIIYTRDSELFEDTLKCFREISVEIIQSELNS 195

Query: 101 NPYFLMSVDE 110
           N  F +S +E
Sbjct: 196 NQIFQIS*EE 225


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,770,127
Number of Sequences: 28460
Number of extensions: 86710
Number of successful extensions: 394
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of query: 415
length of database: 4,897,600
effective HSP length: 93
effective length of query: 322
effective length of database: 2,250,820
effective search space: 724764040
effective search space used: 724764040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)