TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0039.7
         (754 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9960 similar to UP|Q8GUJ7 (Q8GUJ7) Dipeptidyl peptidase IV-lik...   311  2e-85
TC19014 similar to GB|BAB10391.1|10177085|AB006701 dipeptidyl pe...   268  2e-72
AV415168                                                              256  1e-68
TC16576 weakly similar to UP|O76728 (O76728) Oligopeptidase B, p...    39  0.004
BP074237                                                               30  1.1
TC8193 similar to UP|Q9M5J4 (Q9M5J4) Beta-galactosidase  (Lactas...    29  2.4
TC19485 weakly similar to UP|Q8VZH2 (Q8VZH2) AT4g33090/F4I10_20 ...    28  4.1
BP037861                                                               28  4.1
TC16342 homologue to GB|AAF14863.1|6523807|AF113122 AP-2rep tran...    28  5.4
BP085370                                                               28  7.1
AV772566                                                               28  7.1
BP083173                                                               27  9.2

>TC9960 similar to UP|Q8GUJ7 (Q8GUJ7) Dipeptidyl peptidase IV-like protein,
           partial (23%)
          Length = 748

 Score =  311 bits (798), Expect = 2e-85
 Identities = 148/148 (100%), Positives = 148/148 (100%)
 Frame = +1

Query: 607 LVKQGLAKAGHIGLYGWSYGGYLSAMTLSRYPDFFKCAVAGAPVTSWDGYDTFYTEKYMG 666
           LVKQGLAKAGHIGLYGWSYGGYLSAMTLSRYPDFFKCAVAGAPVTSWDGYDTFYTEKYMG
Sbjct: 1   LVKQGLAKAGHIGLYGWSYGGYLSAMTLSRYPDFFKCAVAGAPVTSWDGYDTFYTEKYMG 180

Query: 667 LPSENQSEYESGSVMNQVHKLKGRLLLVHGMIDENVHFRHTARLINALVAAGKPYELVLF 726
           LPSENQSEYESGSVMNQVHKLKGRLLLVHGMIDENVHFRHTARLINALVAAGKPYELVLF
Sbjct: 181 LPSENQSEYESGSVMNQVHKLKGRLLLVHGMIDENVHFRHTARLINALVAAGKPYELVLF 360

Query: 727 PDERHMPRRHSDRVYMEERMWEFIDRNL 754
           PDERHMPRRHSDRVYMEERMWEFIDRNL
Sbjct: 361 PDERHMPRRHSDRVYMEERMWEFIDRNL 444


>TC19014 similar to GB|BAB10391.1|10177085|AB006701 dipeptidyl peptidase
           IV-like protein {Arabidopsis thaliana;} , partial (16%)
          Length = 680

 Score =  268 bits (686), Expect = 2e-72
 Identities = 133/133 (100%), Positives = 133/133 (100%)
 Frame = +3

Query: 1   MPVTDFSDVPNIDDNILFPVEEIVQYPLPGYVSPSSINFSPDDSLISYLYSPEQTLNRKV 60
           MPVTDFSDVPNIDDNILFPVEEIVQYPLPGYVSPSSINFSPDDSLISYLYSPEQTLNRKV
Sbjct: 282 MPVTDFSDVPNIDDNILFPVEEIVQYPLPGYVSPSSINFSPDDSLISYLYSPEQTLNRKV 461

Query: 61  FAFNVKTKAQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVTRYEWVKTSSKRKAVM 120
           FAFNVKTKAQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVTRYEWVKTSSKRKAVM
Sbjct: 462 FAFNVKTKAQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVTRYEWVKTSSKRKAVM 641

Query: 121 VPLPAGIYIQDIS 133
           VPLPAGIYIQDIS
Sbjct: 642 VPLPAGIYIQDIS 680


>AV415168 
          Length = 374

 Score =  256 bits (653), Expect = 1e-68
 Identities = 124/124 (100%), Positives = 124/124 (100%)
 Frame = +2

Query: 469 RVLLCSLEDGRVIMPLFEQPFSVPRFKKLQLEPPEIVEIQANDGTVLYGALYKPDASRFG 528
           RVLLCSLEDGRVIMPLFEQPFSVPRFKKLQLEPPEIVEIQANDGTVLYGALYKPDASRFG
Sbjct: 2   RVLLCSLEDGRVIMPLFEQPFSVPRFKKLQLEPPEIVEIQANDGTVLYGALYKPDASRFG 181

Query: 529 PPPYKTMINVYGGPSVQLVSNSWLNTVDMRAQYLRNQGILVWKLDNRGTARRGLKFESYL 588
           PPPYKTMINVYGGPSVQLVSNSWLNTVDMRAQYLRNQGILVWKLDNRGTARRGLKFESYL
Sbjct: 182 PPPYKTMINVYGGPSVQLVSNSWLNTVDMRAQYLRNQGILVWKLDNRGTARRGLKFESYL 361

Query: 589 KHKL 592
           KHKL
Sbjct: 362 KHKL 373


>TC16576 weakly similar to UP|O76728 (O76728) Oligopeptidase B, partial
           (30%)
          Length = 1202

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +3

Query: 599 DQLTGAEWLVKQGLAKAGHIGLYGWSYGGYLSAMTLSRYPDFFKCAVAGAP 649
           D +  AE+L+++ L     + + G S GG L    L+  PD FK AVAG P
Sbjct: 255 DFIACAEYLIEKKLCSKERLCIEGRSAGGLLIGAVLNMRPDLFKAAVAGVP 407


>BP074237 
          Length = 406

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 294 LARVNWMHGNTLTAQVLNRHHTKIKILKFDI 324
           LAR NW  G  L  ++L++H+ ++ +++ D+
Sbjct: 399 LARRNWREGQHLVQKILSKHYLEVLVMEEDV 307


>TC8193 similar to UP|Q9M5J4 (Q9M5J4) Beta-galactosidase  (Lactase) , partial
            (80%)
          Length = 2257

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = +2

Query: 294  LARVNWMHGNTLTAQVLNRHHTKIKILKFDIRTGQGKNILVEENSTW----INIHDCFTP 349
            L+R  W +   L  + LN H T        ++  QG  +  ++  TW     N      P
Sbjct: 1307 LSRQKWSYKVGLKGEALNLHTTSGSS---SVQWTQGSLVAKKQPLTWYKATFNAPASNDP 1477

Query: 350  LDKGITKFSGGFIWASEKTGFRHLYLHDANGTC 382
            L   +T    G +W + ++  RH   + A G+C
Sbjct: 1478 LALDMTSMGKGEVWINGQSIGRHWPGYIARGSC 1576


>TC19485 weakly similar to UP|Q8VZH2 (Q8VZH2) AT4g33090/F4I10_20
           (Aminopeptidase M), partial (14%)
          Length = 604

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/60 (31%), Positives = 27/60 (44%), Gaps = 4/60 (6%)
 Frame = +3

Query: 301 HGNTLTAQVLNRHHTKIKILKFDIRTGQGKNILVEENSTWINIHDC----FTPLDKGITK 356
           HG      VL     +I +L+FD     G+ +L  E S  +N H C     T +D G+ K
Sbjct: 357 HGQHTPCDVLGEGEDEILVLEFDESLSVGEGVLEIELSGILNEHLCGLYRCTYVDGGVKK 536


>BP037861 
          Length = 461

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
 Frame = -3

Query: 250 HPYPFAGASNVKVRLGVVSAAGSSITWMDLLCGGKEQQANEEEYLARVN-----WMHGNT 304
           +P+P +GAS           A   +  + L+  G E + + E  L +VN     +  GN+
Sbjct: 447 YPFPASGAS-----------ASIVLPTVTLVLDGAEMRVSGERLLYQVNDFVCCFTFGNS 301

Query: 305 ----LTAQVLNRHHTKIKILKFDI 324
               + A V+  HH + K ++FD+
Sbjct: 300 DLLGIEAYVIGHHHQQNKWMEFDL 229


>TC16342 homologue to GB|AAF14863.1|6523807|AF113122 AP-2rep transcription
           factor {Homo sapiens;} , partial (6%)
          Length = 676

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/21 (52%), Positives = 16/21 (75%)
 Frame = -3

Query: 302 GNTLTAQVLNRHHTKIKILKF 322
           GNT  +Q+ N+ H+K KIL+F
Sbjct: 641 GNTSPSQIYNKLHSKAKILRF 579


>BP085370 
          Length = 381

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 18/28 (63%)
 Frame = -2

Query: 29  PGYVSPSSINFSPDDSLISYLYSPEQTL 56
           PG  SPS++ FSP++S +S L S    L
Sbjct: 368 PGQNSPSTVIFSPENSPVSKLNSKSDVL 285


>AV772566 
          Length = 518

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -2

Query: 166 DHELHVLNLFTNESKQLTHGAKENGLTRGLAEYIAQEEMDRKNGYWWSLDSKYIAFTEVD 225
           +H L ++    N+   +T   +  G   G  E   + E+D +    WS    Y++  E+D
Sbjct: 454 NHGLQIMQTDANDVTSMTETGEGEGEGEGEGE--GEGELDLELNLGWSQ*DHYVSRAEMD 281

Query: 226 SSE--IPLF 232
            S   IP+F
Sbjct: 280 KSSRLIPVF 254


>BP083173 
          Length = 359

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 162 AYVRDHELHVLNLFTNESKQLTHGAKENGLTRGLAEYIAQEEMD 205
           A+   H LH+ +++ N  K  +  + E  + + L   + + EMD
Sbjct: 249 AHNNKHRLHIQSMYMN*MKDFSFSSSECNIRQSLLHMVFRSEMD 118


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,814,690
Number of Sequences: 28460
Number of extensions: 202178
Number of successful extensions: 824
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of query: 754
length of database: 4,897,600
effective HSP length: 97
effective length of query: 657
effective length of database: 2,136,980
effective search space: 1403995860
effective search space used: 1403995860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)