BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0039.6
(578 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV415545 176 7e-45
CB828185 117 7e-27
BP056380 77 1e-14
TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 74 8e-14
TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (... 71 4e-13
TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 70 9e-13
AU089356 70 1e-12
TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 69 2e-12
TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 65 2e-11
TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 64 7e-11
TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%) 57 6e-09
AV428412 57 8e-09
BP041503 57 8e-09
TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal... 50 1e-06
TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 48 4e-06
AV410621 47 6e-06
TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension ... 47 8e-06
TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal prote... 47 8e-06
CN824966 47 8e-06
TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 45 2e-05
>AV415545
Length = 352
Score = 176 bits (447), Expect = 7e-45
Identities = 90/123 (73%), Positives = 100/123 (81%)
Frame = +3
Query: 309 DGEGGLKKGTRVGQGALREVAAYILDHPKKGPRSYHNSDEKGFAGVPPTVMVKCLHKGFH 368
DGEG LKKGTRVGQGA REVAAY+LDHP G RS DEKGFAGVPPTVM K LHKGF+
Sbjct: 3 DGEG-LKKGTRVGQGAFREVAAYVLDHPMSGRRSLFG-DEKGFAGVPPTVMAKSLHKGFN 176
Query: 369 HPEGYNSASDNVKLGSLQMFMKNIGSCEDMGPSVFPVEEVHKISVLDIRLANADRHAGNI 428
HP + K+GSLQMFM+N GSCEDMGP FP++EVHKISVLD+RLANADRHAGNI
Sbjct: 177 HPGDLTA-----KIGSLQMFMENNGSCEDMGPGAFPIKEVHKISVLDMRLANADRHAGNI 341
Query: 429 LVA 431
L++
Sbjct: 342 LIS 350
>CB828185
Length = 533
Score = 117 bits (292), Expect = 7e-27
Identities = 59/130 (45%), Positives = 79/130 (60%)
Frame = +3
Query: 403 FPVEEVHKISVLDIRLANADRHAGNILVAKDGENGSTVLIPIDHGYCLPESFEDCTFDWL 462
FP ++I +LDIR+ N DRHAGN+LV K G L PIDHG CLPES ED F+W+
Sbjct: 12 FPGCCCYRIGILDIRILNTDRHAGNLLVRKVGRFDEVELFPIDHGLCLPESLEDPYFEWI 191
Query: 463 YWPQAKEPYSPDTIEYIKSLDAEEDIKLLKFHGWELPPECARLLRISTMLLKKGAEKGLP 522
+WPQA P+S D ++YI LD D ++L+ + C R+L + T+ LK+ A GL
Sbjct: 192 HWPQASIPFSDDELKYISHLDPFRDSEMLRMELPMIREACLRVLVLCTLFLKEAAAFGLC 371
Query: 523 PFTIGSIMCR 532
IG +M R
Sbjct: 372 LAEIGDMMSR 401
>BP056380
Length = 415
Score = 76.6 bits (187), Expect = 1e-14
Identities = 35/57 (61%), Positives = 46/57 (80%)
Frame = -2
Query: 519 KGLPPFTIGSIMCRETLKKKSVIEQIIEEAEEGALPGTSEASFLDLVSVIMDSHLEE 575
+G+ PF IGS++CRE+L K+S IE I++EA + LPGTSEA+FLD VS IMD HL+E
Sbjct: 414 RGMTPFAIGSLLCRESLNKESAIEGIVKEALDSVLPGTSEATFLDAVSDIMDQHLDE 244
>TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (67%)
Length = 842
Score = 73.6 bits (179), Expect = 8e-14
Identities = 54/183 (29%), Positives = 92/183 (49%), Gaps = 2/183 (1%)
Frame = +1
Query: 19 SCFSHHLRDSILIYLTVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELA 78
S SH + I + T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L
Sbjct: 55 SLISHRFKMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL- 228
Query: 79 RDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKG 138
D + DY + + LHLVLRL I V+T GK V + VK +I K
Sbjct: 229 EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK- 405
Query: 139 QGLLDLADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELS 196
+G + Q L++ G+ LED R + D ++ +H ++R ++ K + GK L
Sbjct: 406 EG-IPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 582
Query: 197 IEA 199
+E+
Sbjct: 583 VES 591
Score = 72.4 bits (176), Expect = 2e-13
Identities = 53/178 (29%), Positives = 93/178 (51%), Gaps = 3/178 (1%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D+
Sbjct: 295 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDR-T 471
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
+ DY + + LHLVLRL I V+T GK V + VK +I K +G +
Sbjct: 472 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 645
Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
Q L++ G+ LED R + D ++ +H ++R ++ K + GK L +E+
Sbjct: 646 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 819
>TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (fragment)
{Helianthus annuus;} , partial (93%)
Length = 1380
Score = 71.2 bits (173), Expect = 4e-13
Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 3/178 (1%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 490 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRS 666
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
+ DY + + LHLVLRL I V+T GK V + VK +I K +G +
Sbjct: 667 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 840
Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
Q L++ G+ LED R + D ++ +H ++R ++ K + GK L +E+
Sbjct: 841 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 1014
Score = 70.9 bits (172), Expect = 5e-13
Identities = 53/178 (29%), Positives = 92/178 (50%), Gaps = 3/178 (1%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 262 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 438
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
+ DY + + LHLVLRL I V+T GK V + VK +I K +G +
Sbjct: 439 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 612
Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
Q L++ G+ LED R + D ++ +H ++R ++ K + GK L +E+
Sbjct: 613 PDQQRLIFAGKQLEDGRSLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 786
Score = 70.5 bits (171), Expect = 7e-13
Identities = 48/155 (30%), Positives = 82/155 (51%), Gaps = 1/155 (0%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 718 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 894
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
+ DY + + LHLVLRL I V+T GK V + VK +I K +G +
Sbjct: 895 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 1068
Query: 144 LADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR 178
Q L++ G+ LED R + D ++ +H ++R
Sbjct: 1069PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 1173
Score = 70.1 bits (170), Expect = 9e-13
Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 2/168 (1%)
Frame = +1
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 64 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 240
Query: 94 VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
LHLVLRL I V+T GK V + VK +I K +G + Q L++ G
Sbjct: 241 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 414
Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
+ LED R + D ++ +H ++R ++ K + GK L +E+
Sbjct: 415 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 558
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 1/78 (1%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 946 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 1122
Query: 84 VRDYGVSDGNVLHLVLRL 101
+ DY + + LHLVLRL
Sbjct: 1123 LADYNIQKESTLHLVLRL 1176
>TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (70%)
Length = 868
Score = 70.1 bits (170), Expect = 9e-13
Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 2/168 (1%)
Frame = +3
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 96 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 272
Query: 94 VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
LHLVLRL I V+T GK V + VK +I K +G + Q L++ G
Sbjct: 273 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 446
Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
+ LED R + D ++ +H ++R ++ K + GK L +E+
Sbjct: 447 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 590
Score = 60.5 bits (145), Expect = 7e-10
Identities = 41/129 (31%), Positives = 65/129 (49%), Gaps = 1/129 (0%)
Frame = +3
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 294 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 470
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
+ DY + + LHLVLRL I V+T GK V + VK +I K D
Sbjct: 471 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 650
Query: 144 LADQELVWE 152
+ L WE
Sbjct: 651 QPEAHLCWE 677
Score = 43.1 bits (100), Expect = 1e-04
Identities = 28/82 (34%), Positives = 39/82 (47%)
Frame = +1
Query: 56 RIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGK 115
R +T + Q+L+F GK+L D + DY + + LHLVLRL I V+T GK
Sbjct: 619 RFRTRRASLQTSQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 795
Query: 116 EFGFYVGKKRNVGYVKQQIARK 137
V + VK +I K
Sbjct: 796 TITLEVESSDTIDNVKAKIQDK 861
>AU089356
Length = 600
Score = 69.7 bits (169), Expect = 1e-12
Identities = 50/168 (29%), Positives = 86/168 (50%), Gaps = 2/168 (1%)
Frame = +1
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 46 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 222
Query: 94 VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
LHLVLRL I V+T GK V + VK +I K +G + Q L++ G
Sbjct: 223 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 396
Query: 154 EALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV-GKDFELSIEA 199
+ LED R + D ++ +H ++R ++ K + GK L +E+
Sbjct: 397 KQLEDGRTLADYNIXKESTLHLVLRLRGGMQIFVKTLTGKTITLXVES 540
Score = 55.5 bits (132), Expect = 2e-08
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 244 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 420
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQ 139
+ DY + + LHLVLRL I V+T GK V + + + +R+G+
Sbjct: 421 LADYNIXKESTLHLVLRLRGGMQIFVKTLTGKTITLXVESSDTIDNXEGKNSRQGR 588
>TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (43%)
Length = 563
Score = 69.3 bits (168), Expect = 2e-12
Identities = 45/145 (31%), Positives = 76/145 (52%)
Frame = +3
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 93 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 269
Query: 94 VLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEG 153
LHLVLRL I V+T GK V + VK +I K +G + Q L++ G
Sbjct: 270 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAG 443
Query: 154 EALEDQRLIEDICKDNDAVIHFLVR 178
+ LED R + D ++ +H ++R
Sbjct: 444 KQLEDGRTLADYNIQKESTLHLVLR 518
Score = 53.1 bits (126), Expect = 1e-07
Identities = 32/92 (34%), Positives = 53/92 (56%), Gaps = 1/92 (1%)
Frame = +3
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 291 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 467
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGK 115
+ DY + + LHLVLRL I V+T GK
Sbjct: 468 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 563
>TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 567
Score = 65.5 bits (158), Expect = 2e-11
Identities = 46/141 (32%), Positives = 75/141 (52%), Gaps = 1/141 (0%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 139 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 315
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLD 143
+ DY + + LHLVLRL I V+T GK V + VK +I K +G +
Sbjct: 316 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IP 489
Query: 144 LADQELVWEGEALEDQRLIED 164
Q L++ G+ LED R + D
Sbjct: 490 PDQQRLIFAGKQLEDGRTLAD 552
Score = 59.7 bits (143), Expect = 1e-09
Identities = 46/148 (31%), Positives = 74/148 (49%), Gaps = 2/148 (1%)
Frame = +1
Query: 54 KLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTEC 113
K +IQ +G +Q+L+F GK+L D + DY + + LHLVLRL I V+T
Sbjct: 1 KAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 177
Query: 114 GKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEGEALEDQRLIEDICKDNDAVI 173
GK V + VK +I K +G + Q L++ G+ LED R + D ++ +
Sbjct: 178 GKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 351
Query: 174 HFLVR-TSDAKVTTKPV-GKDFELSIEA 199
H ++R ++ K + GK L +E+
Sbjct: 352 HLVLRLRGGMQIFVKTLTGKTITLEVES 435
Score = 35.0 bits (79), Expect = 0.033
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 367 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 543
Query: 84 VRDY 87
+ DY
Sbjct: 544 LADY 555
>TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (37%)
Length = 574
Score = 63.9 bits (154), Expect = 7e-11
Identities = 43/135 (31%), Positives = 71/135 (51%)
Frame = +1
Query: 44 IMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVLRLSD 103
+ +D+I ++K +IQ +G +Q+L+F GK+L D + DY + + LHLVLRL
Sbjct: 4 VESSDTIDNVKAKIQDQEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRG 180
Query: 104 LQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEGEALEDQRLIE 163
I V+T GK V + VK +I K +G + Q L++ G+ LED R +
Sbjct: 181 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAGKQLEDGRTLA 354
Query: 164 DICKDNDAVIHFLVR 178
D ++ +H ++R
Sbjct: 355 DYNIQKESTLHLVLR 399
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 1/78 (1%)
Frame = +1
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 172 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 348
Query: 84 VRDYGVSDGNVLHLVLRL 101
+ DY + + LHLVLRL
Sbjct: 349 LADYNIQKESTLHLVLRL 402
>TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)
Length = 527
Score = 57.4 bits (137), Expect = 6e-09
Identities = 40/123 (32%), Positives = 63/123 (50%)
Frame = +3
Query: 56 RIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGK 115
+IQ +G +Q+L+F GK+L D + DY + + LHLVLRL I V+T GK
Sbjct: 6 KIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 182
Query: 116 EFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEGEALEDQRLIEDICKDNDAVIHF 175
V + VK +I K +G + Q L++ G+ LED R + D ++ +H
Sbjct: 183 TITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 356
Query: 176 LVR 178
++R
Sbjct: 357 VLR 365
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 1/78 (1%)
Frame = +3
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 138 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 314
Query: 84 VRDYGVSDGNVLHLVLRL 101
+ DY + + LHLVLRL
Sbjct: 315 LADYNIQKESTLHLVLRL 368
>AV428412
Length = 426
Score = 57.0 bits (136), Expect = 8e-09
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Frame = +2
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 86 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 262
Query: 84 VRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARK 137
+ DY + + LHLVLRL I V+T GK V + VK +I K
Sbjct: 263 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 424
Score = 50.1 bits (118), Expect = 1e-06
Identities = 40/130 (30%), Positives = 63/130 (47%), Gaps = 2/130 (1%)
Frame = +2
Query: 72 FEGKELARDKLCVRDYGVSDGNVLHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVK 131
F GK+L D + DY + + LHLVLRL I V+T GK V + VK
Sbjct: 2 FAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 178
Query: 132 QQIARKGQGLLDLADQELVWEGEALEDQRLIEDICKDNDAVIHFLVR-TSDAKVTTKPV- 189
+I K +G + Q L++ G+ LED R + D ++ +H ++R ++ K +
Sbjct: 179 AKIQDK-EG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 352
Query: 190 GKDFELSIEA 199
GK L +E+
Sbjct: 353 GKTITLEVES 382
>BP041503
Length = 361
Score = 57.0 bits (136), Expect = 8e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 552 ALPGTSEASFLDLVSVIMDSHLEEPFP 578
ALPGTSEASFLDLVSVIMDSHLEEPFP
Sbjct: 361 ALPGTSEASFLDLVSVIMDSHLEEPFP 281
>TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal protein L3
{Arabidopsis thaliana;} , partial (83%)
Length = 1408
Score = 50.1 bits (118), Expect = 1e-06
Identities = 30/95 (31%), Positives = 49/95 (51%)
Frame = +1
Query: 40 VPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLHLVL 99
+ + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + + LHLVL
Sbjct: 7 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVL 183
Query: 100 RLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQI 134
RL I V+T GK V + VK +
Sbjct: 184 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKATV 288
>TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (23%)
Length = 502
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/78 (34%), Positives = 47/78 (59%), Gaps = 1/78 (1%)
Frame = +2
Query: 25 LRDSILIYL-TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLC 83
LR + I++ T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D
Sbjct: 23 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 199
Query: 84 VRDYGVSDGNVLHLVLRL 101
+ DY + + LHLVLRL
Sbjct: 200 LADYNIQKESTLHLVLRL 253
Score = 39.7 bits (91), Expect = 0.001
Identities = 28/84 (33%), Positives = 42/84 (49%)
Frame = +2
Query: 95 LHLVLRLSDLQAITVRTECGKEFGFYVGKKRNVGYVKQQIARKGQGLLDLADQELVWEGE 154
LHLVLRL I V+T GK V + VK +I K +G + Q L++ G+
Sbjct: 5 LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-EG-IPPDQQRLIFAGK 178
Query: 155 ALEDQRLIEDICKDNDAVIHFLVR 178
LED R + D ++ +H ++R
Sbjct: 179 QLEDGRTLADYNIQKESTLHLVLR 250
>AV410621
Length = 292
Score = 47.4 bits (111), Expect = 6e-06
Identities = 26/77 (33%), Positives = 44/77 (56%)
Frame = +3
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 63 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 239
Query: 94 VLHLVLRLSDLQAITVR 110
LHLVLRL I V+
Sbjct: 240 TLHLVLRLRGGMQIFVK 290
>TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension protein,
partial (97%)
Length = 644
Score = 47.0 bits (110), Expect = 8e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +1
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 49 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 225
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 226 TLHLVLRL 249
>TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal protein S27a
fusion protein - white lupine {Lupinus
albus;}, complete
Length = 729
Score = 47.0 bits (110), Expect = 8e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +1
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 100 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 276
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 277 TLHLVLRL 300
>CN824966
Length = 600
Score = 47.0 bits (110), Expect = 8e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +1
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 34 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 210
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 211 TLHLVLRL 234
>TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (18%)
Length = 427
Score = 45.4 bits (106), Expect = 2e-05
Identities = 23/65 (35%), Positives = 39/65 (59%)
Frame = +2
Query: 37 GSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGNVLH 96
G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + + LH
Sbjct: 2 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLH 178
Query: 97 LVLRL 101
LVLRL
Sbjct: 179 LVLRL 193
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,489,732
Number of Sequences: 28460
Number of extensions: 130941
Number of successful extensions: 640
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of query: 578
length of database: 4,897,600
effective HSP length: 95
effective length of query: 483
effective length of database: 2,193,900
effective search space: 1059653700
effective search space used: 1059653700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0039.6