BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0039.5
(582 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CN825195 348 2e-96
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 220 5e-95
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 249 1e-66
TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesteras... 242 1e-64
TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 232 1e-61
TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precu... 221 2e-58
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu... 167 3e-42
AI967495 142 1e-34
TC12620 weakly similar to UP|Q9FK05 (Q9FK05) Pectinesterase, par... 140 4e-34
TC10625 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 86 5e-33
AV765593 136 1e-32
TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precur... 126 8e-30
TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isof... 125 1e-29
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 120 8e-28
BP050971 115 2e-26
AV426815 103 6e-23
AU089161 62 4e-22
TC8595 similar to PIR|T09390|T09390 21K protein precursor - alfa... 92 2e-19
TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%) 91 7e-19
BF177669 91 7e-19
>CN825195
Length = 551
Score = 348 bits (892), Expect = 2e-96
Identities = 176/178 (98%), Positives = 176/178 (98%)
Frame = +2
Query: 181 LTNQDTCADGFADTSGDVKDQMAGNLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLLAM 240
LTNQDTCADGFADTSGDVKDQMA NLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLLAM
Sbjct: 17 LTNQDTCADGFADTSGDVKDQMAVNLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLLAM 196
Query: 241 RDDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRRFIIYV 300
RDDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRRFIIYV
Sbjct: 197 RDDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRRFIIYV 376
Query: 301 RAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMDGLLTTFHTASFAASGAGFI 358
RAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVM GLLTTFHTASFAASGAGFI
Sbjct: 377 RAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMYGLLTTFHTASFAASGAGFI 550
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 220 bits (561), Expect(2) = 5e-95
Identities = 107/190 (56%), Positives = 142/190 (74%)
Frame = +2
Query: 273 DGNGTAKTIAEAIKKVPEYGSRRFIIYVRAGRYEENNLKIGRKRTNVMIIGDGKGKTVIT 332
DG+G T+ EA+ P+Y +RF+IYV+ G YEE +I +K+ N+M++GDG TVI+
Sbjct: 29 DGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGVYEEY-AEIKKKKWNIMMVGDGMDVTVIS 205
Query: 333 GGKNVMDGLLTTFHTASFAASGAGFIARDMTFENYAGPEKHQAVALRVGADHAVVYRCNV 392
G ++ DG TTF +A+FA SG GFIAR +TF+N AGPEKHQAVALR +D AV +RC++
Sbjct: 206 GNRSFGDGW-TTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAVFFRCSI 382
Query: 393 IGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRK 452
GYQD++Y H+ RQFY+EC I GTVDFIFG+A VFQNC++ ARK + QKNTITAQ RK
Sbjct: 383 TGYQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQDQKNTITAQGRK 562
Query: 453 DPNQNTGISI 462
DP Q++G +
Sbjct: 563 DPGQSSGFFV 592
Score = 145 bits (365), Expect(2) = 5e-95
Identities = 70/120 (58%), Positives = 85/120 (70%)
Frame = +3
Query: 461 SIHACRVLAAADLKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALD 520
S C + A ++L S S +TYLGRPWK YSRTV+M S++ D V +GWLEWNT+F D
Sbjct: 588 SFQYCNITADSELLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-D 764
Query: 521 TLYYGEYMNYGPGAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGL 580
TL+YGEY+NYG GA VG RV W GY V+ + EA +FTV QFI G WLPSTGVA+ GL
Sbjct: 765 TLFYGEYLNYGAGAGVGNRVKWGGYHVLNDS-EAGKFTVNQFIEGNLWLPSTGVAYTGGL 941
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 249 bits (635), Expect = 1e-66
Identities = 129/228 (56%), Positives = 163/228 (70%), Gaps = 5/228 (2%)
Frame = +1
Query: 267 DVVVSKDGNGTAK--TIAEAIKKVPEYGSRR---FIIYVRAGRYEENNLKIGRKRTNVMI 321
D V+ NGT +I +AI P + + F+IYVR G YEE + + +++ N+++
Sbjct: 148 DFVIVSPYNGTDNYTSIGDAIAAAPNHTKPQDGYFLIYVREGYYEEYVI-VPKEKKNILL 324
Query: 322 IGDGKGKTVITGGKNVMDGLLTTFHTASFAASGAGFIARDMTFENYAGPEKHQAVALRVG 381
+GDG KT+ITG +V+DG TTF++++FA SG F A D+TF N AGP KHQAVA+R
Sbjct: 325 VGDGINKTIITGNHSVIDGW-TTFNSSTFAVSGERFTAVDVTFRNTAGPAKHQAVAVRNN 501
Query: 382 ADHAVVYRCNVIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQ 441
AD + YRC+ GYQDT+YVHS RQFYRECDIYGTVDFIFGNAAVVFQNC++YARKP+
Sbjct: 502 ADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPLPF 681
Query: 442 QKNTITAQNRKDPNQNTGISIHACRVLAAADLKASNESFETYLGRPWK 489
QKN +TAQ R DPNQNTGISI C + AA DL A S +YLGRPW+
Sbjct: 682 QKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLGRPWE 825
>TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase ,
partial (29%)
Length = 934
Score = 242 bits (617), Expect = 1e-64
Identities = 121/253 (47%), Positives = 156/253 (60%)
Frame = +2
Query: 328 KTVITGGKNVMDGLLTTFHTASFAASGAGFIARDMTFENYAGPEKHQAVALRVGADHAVV 387
KT+ITG KN DG+ T TA+FA GFIA+ +TFEN AGP HQAVALR D +
Sbjct: 11 KTIITGRKNFADGV-KTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAF 187
Query: 388 YRCNVIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTIT 447
C+++GYQDT+YV +NRQFYR C I GT+DFIFG + + Q+ + RKP Q NT+T
Sbjct: 188 VGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVT 367
Query: 448 AQNRKDPNQNTGISIHACRVLAAADLKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQ 507
A N TGI I C ++ A L ++YLGRPWK YSRTV M S +GD +H
Sbjct: 368 ADGTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDFIHP 547
Query: 508 RGWLEWNTTFALDTLYYGEYMNYGPGAAVGQRVNWPGYRVITSALEASRFTVAQFILGAT 567
GW W +FALDTLYY E+ N GPGA R+ W GYR + S EA++FT +F+
Sbjct: 548 EGWFPWAGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFLKAG- 724
Query: 568 WLPSTGVAFLSGL 580
P +G+ ++ L
Sbjct: 725 --PRSGLDWIKAL 757
>TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (43%)
Length = 564
Score = 232 bits (592), Expect = 1e-61
Identities = 109/110 (99%), Positives = 110/110 (99%)
Frame = +3
Query: 473 LKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGP 532
LKASN+SFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGP
Sbjct: 3 LKASNDSFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGP 182
Query: 533 GAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGLST 582
GAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGLST
Sbjct: 183 GAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGLST 332
>TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (34%)
Length = 773
Score = 221 bits (564), Expect = 2e-58
Identities = 109/206 (52%), Positives = 135/206 (64%), Gaps = 1/206 (0%)
Frame = +3
Query: 372 KHQAVALRVGADHAVVYRCNVIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNC 431
KHQAVA+R G+D +V YRC+ G+QDT+Y HSNRQFYRECDI GT+DFIFGNAA +FQNC
Sbjct: 6 KHQAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQNC 185
Query: 432 SLYARKPMAQQKNTITAQNRKDPNQNTGISIHACRVLAAADLKASNESFETYLGRPWKLY 491
+ R+PM Q TITAQ +KDPNQNTGI I + S + TYLGRPWK +
Sbjct: 186 KIMPRQPMPNQFYTITAQGKKDPNQNTGIVIQKSTITPL----ESTYTAPTYLGRPWKDF 353
Query: 492 SRTVYMMSYIGDHVHQRGWLEWNTTF-ALDTLYYGEYMNYGPGAAVGQRVNWPGYRVITS 550
S T+ M S IG + GW+ W T++Y E+ N GPG+ V QRV W GY+ +
Sbjct: 354 STTLIMQSEIGSFLKPVGWVSWVANVDPPATIFYAEHQNSGPGSDVAQRVKWTGYKSTLT 533
Query: 551 ALEASRFTVAQFILGATWLPSTGVAF 576
A + +FT+A FI G WLP T VAF
Sbjct: 534 ADDLGKFTLASFIQGPEWLPDTAVAF 611
>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
(Pectinesterase) , partial (59%)
Length = 1082
Score = 167 bits (424), Expect = 3e-42
Identities = 106/290 (36%), Positives = 160/290 (54%), Gaps = 9/290 (3%)
Frame = +3
Query: 82 CSKTRFPSLCVKSLLDFPGSTAASERD-----LVHISLNMTFQHLAKALYSSAAISASMD 136
C S C+ + + S ++ +D L+ + T H+ +A+ + AI ++
Sbjct: 243 CEHALDASSCLAHVSEVSQSPISATKDPKLNILISLMTKST-SHIQEAMVKTKAIKNRIN 419
Query: 137 -PRVRAAYDDCLELLDDSVDALGRSLSSFAAGSSSS--DVMTWLSAALTNQDTCADGFAD 193
PR AA DC +L+D S+D + S+ + ++ S D WLS LTN TC DG
Sbjct: 420 NPREEAALSDCEQLMDLSIDRVWDSVMALTKDNTDSHQDAHAWLSGVLTNHATCLDGL-- 593
Query: 194 TSGDVKDQMAGNLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLL-AMRDDNFPRWLNRR 252
G + M ++DL LA+ G N +++ D +FP W+ R+
Sbjct: 594 -EGPSRALMEAEIEDLISRSKTSLALLVSVLAPKGG----NEQIIDEPLDGDFPSWVTRK 758
Query: 253 DRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRRFIIYVRAGRYEENNLKI 312
DRRLL V + A+VVV+KDG+G KT+AEA+ P+ G R++IYV+ G Y+E N++I
Sbjct: 759 DRRLLESSVGDVNANVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKKGTYKE-NIEI 935
Query: 313 GRKRTNVMIIGDGKGKTVITGGKNVMDGLLTTFHTASFAASGAGFIARDM 362
G+K+TNVM+ GDG T+ITG NV+DG TTF +A+ AA G GFIA+D+
Sbjct: 936 GKKKTNVMLTGDGMDATIITGNLNVIDG-STTFKSATVAAVGDGFIAQDI 1082
>AI967495
Length = 390
Score = 142 bits (358), Expect = 1e-34
Identities = 69/122 (56%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Frame = +1
Query: 401 VHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGI 460
VH+ RQFY++C IYGTVD IFGNAAVVFQNC ++A+KP+ Q N ITAQ R DP QNTGI
Sbjct: 16 VHAQRQFYKQCQIYGTVDLIFGNAAVVFQNCKIFAKKPLDGQANMITAQGRDDPFQNTGI 195
Query: 461 SIHACRVLAAADLKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEW-NTTFAL 519
+IH + AA DLK T LGRPW+ YSR V + +++ V GW W +T FAL
Sbjct: 196 TIHNSEIRAAPDLKPVVNKHNTSLGRPWQQYSRVVVLKTFMDTLVSPLGWSSWDDTDFAL 375
Query: 520 DT 521
DT
Sbjct: 376 DT 381
>TC12620 weakly similar to UP|Q9FK05 (Q9FK05) Pectinesterase, partial (10%)
Length = 430
Score = 140 bits (354), Expect = 4e-34
Identities = 79/142 (55%), Positives = 99/142 (69%), Gaps = 10/142 (7%)
Frame = +3
Query: 9 SDSGGGSSRSDVALVNSRT---KTTSGRKKKLIILVLLAVVLIVAS---AVVLTAVRSRA 62
+D GG S RS L S T +S KKKL++L +LA +LIVAS AV++T +RSR
Sbjct: 3 ADPGGSSRRSTAPLTGSTTVVSPNSSSTKKKLVMLAVLAAILIVASVVSAVLVTVIRSRG 182
Query: 63 GGSGA--STLRAKPTQAISNTCSKTRFPSLCVKSLLDFPGSTAASERDLVHISLNMTFQH 120
G S S LR KPTQAIS TCS+TRFP+LC+ SLLDFPGST A+E+DLVHIS NMT H
Sbjct: 183 GSSAGENSNLRGKPTQAISRTCSRTRFPTLCINSLLDFPGSTTATEQDLVHISFNMTHHH 362
Query: 121 LAKALYSSAAIS--ASMDPRVR 140
+++ALY+S+ +S AS R R
Sbjct: 363 ISRALYTSSGLSFPASAGTRAR 428
>TC10625 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (32%)
Length = 538
Score = 85.9 bits (211), Expect(2) = 5e-33
Identities = 35/42 (83%), Positives = 37/42 (87%)
Frame = +2
Query: 501 IGDHVHQRGWLEWNTTFALDTLYYGEYMNYGPGAAVGQRVNW 542
+ DHVH RGWLEWN FALDTLYYGEYMNYGPGAA+GQRV W
Sbjct: 5 MSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKW 130
Score = 72.8 bits (177), Expect(2) = 5e-33
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +3
Query: 537 GQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGLST 582
G +N PGYR+ITS +EA RFTVAQFI G++WLPSTGVA+L+GLST
Sbjct: 114 GNGLNGPGYRIITSTVEADRFTVAQFISGSSWLPSTGVAYLAGLST 251
>AV765593
Length = 501
Score = 136 bits (342), Expect = 1e-32
Identities = 65/125 (52%), Positives = 84/125 (67%)
Frame = -1
Query: 456 QNTGISIHACRVLAAADLKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNT 515
Q+TG SIH C + AA DL +SN + TYLGRPWK YSRTVYM + + + + GW W+
Sbjct: 501 QDTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWDG 322
Query: 516 TFALDTLYYGEYMNYGPGAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVA 575
FAL TLYY E+ N GPG+ RV W GY VI +A +A+ FTV+ F+LG WLP TGV+
Sbjct: 321 EFALSTLYYAEFNNSGPGSNTNGRVTWQGYHVI-NATDAANFTVSNFLLGDDWLPQTGVS 145
Query: 576 FLSGL 580
+ + L
Sbjct: 144 YTNTL 130
>TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precursor
(Pectinesterase) (Pectin methylesterase) (Fragment) ,
partial (33%)
Length = 586
Score = 126 bits (317), Expect = 8e-30
Identities = 59/104 (56%), Positives = 70/104 (66%), Gaps = 2/104 (1%)
Frame = +3
Query: 479 SFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFA--LDTLYYGEYMNYGPGAAV 536
S +TYLGRPWK YSRT+ + S I H+ GW EW+ L TLYYGEY+N G GA
Sbjct: 9 SIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAGT 188
Query: 537 GQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGL 580
G+RVNWPG+ VI +A EAS+FTVAQ I G WL GV F+ GL
Sbjct: 189 GKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 320
>TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isoform alpha
(Fragment) , partial (32%)
Length = 592
Score = 125 bits (315), Expect = 1e-29
Identities = 59/93 (63%), Positives = 68/93 (72%)
Frame = +1
Query: 489 KLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGPGAAVGQRVNWPGYRVI 548
KLYSRTV++ SY+ D + GWLEWN TFALDTLYYGEY N GPG+ RV W GYRVI
Sbjct: 1 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNPSARVKWGGYRVI 180
Query: 549 TSALEASRFTVAQFILGATWLPSTGVAFLSGLS 581
S+ EAS+FTV QFI G+ WL STG+ F LS
Sbjct: 181 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNLS 279
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 120 bits (300), Expect = 8e-28
Identities = 59/102 (57%), Positives = 66/102 (63%)
Frame = +2
Query: 479 SFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGPGAAVGQ 538
SF TYLGRPWK YSRTV+M S I D + GW EW+ FAL+TL Y EY GPGA +
Sbjct: 17 SFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQYPGPGAGTSK 196
Query: 539 RVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGL 580
RV W G +VITSA EA FT FI G+ WL STG F GL
Sbjct: 197 RVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 322
>BP050971
Length = 477
Score = 115 bits (288), Expect = 2e-26
Identities = 56/110 (50%), Positives = 73/110 (65%), Gaps = 1/110 (0%)
Frame = -1
Query: 472 DLKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNT-TFALDTLYYGEYMNY 530
D + SN S T+LGRPWK +SRTV+M S++ + +H GWLEW T T D L++GEY N
Sbjct: 471 DFQPSNGSIPTFLGRPWKNFSRTVFMESFMSEMIHPEGWLEWETYTTYDDPLFFGEYPNK 292
Query: 531 GPGAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGL 580
GPG+ V RV W GY V+ ++ A FTV FI G WLPS GV++ +GL
Sbjct: 291 GPGSGVANRVKWRGYHVLNNS-PAMDFTVNPFIKGDLWLPSPGVSYHAGL 145
>AV426815
Length = 391
Score = 103 bits (258), Expect = 6e-23
Identities = 52/122 (42%), Positives = 80/122 (64%)
Frame = +3
Query: 236 RLLAMRDDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRR 295
R L + +P W++ DRRLL ++ADVVV+ DG+G KT++ A+ PE R
Sbjct: 36 RKLMEAGEVWPEWISAADRRLLQ--AGTVKADVVVAADGSGNFKTVSAAVAAAPEKSKTR 209
Query: 296 FIIYVRAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMDGLLTTFHTASFAASGA 355
++I ++AG Y E N+++ +K+TN+M +GDG+ T+ITG +NV+DG TTFH+A+ A G
Sbjct: 210 YVIKIKAGVYRE-NVEVPKKKTNIMFLGDGRTTTIITGSRNVVDG-STTFHSATVAVVGG 383
Query: 356 GF 357
F
Sbjct: 384 NF 389
>AU089161
Length = 400
Score = 61.6 bits (148), Expect(2) = 4e-22
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +2
Query: 383 DHAVVYRCNVIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVV 427
D + + C + GYQDT+Y H++RQFYR C+I GTVDFIFG + ++
Sbjct: 263 DRSAFFDCAISGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSTLL 397
Score = 60.1 bits (144), Expect(2) = 4e-22
Identities = 34/73 (46%), Positives = 42/73 (56%)
Frame = +1
Query: 308 NNLKIGRKRTNVMIIGDGKGKTVITGGKNVMDGLLTTFHTASFAASGAGFIARDMTFENY 367
+ ++ RK G G KTVITG KN +DG T +A+F F+A+ M FEN
Sbjct: 40 STFRLTRKNLIF*CTGXGPKKTVITGNKNFVDGY-KTMRSATFTTVAPDFMAKSMGFENT 216
Query: 368 AGPEKHQAVALRV 380
AG KHQAVALRV
Sbjct: 217 AGASKHQAVALRV 255
Score = 26.9 bits (58), Expect = 9.2
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +3
Query: 297 IIYVRAGRYEENNLKIGRKRTNVMIIG 323
+IYV+AG Y+E ++I +K+ N+++ G
Sbjct: 9 VIYVKAGVYDE-YIQIDKKKPNILMYG 86
>TC8595 similar to PIR|T09390|T09390 21K protein precursor - alfalfa
{Medicago sativa;}, partial (93%)
Length = 811
Score = 92.0 bits (227), Expect = 2e-19
Identities = 60/190 (31%), Positives = 94/190 (48%), Gaps = 12/190 (6%)
Frame = +1
Query: 42 LLAVVLIVASAVVLTAVRSRAGGSGASTLRAKPTQAISNTCSKTRFPSLCVKSLLDFPGS 101
LL L + SA+ LT A PT I ++CS T++P+LCV+SL + +
Sbjct: 49 LLLTTLFLLSALYLTT--------------ANPTNFIKSSCSTTQYPTLCVESLSAYATT 186
Query: 102 TAASERDLVHISLNMTFQHL--AKALYSSAAISASMDPRVRAAYDDCLELLDDSVDALGR 159
LV +L++T KA S + P+ AA DC E + DSVD L R
Sbjct: 187 IQQDPHQLVQTALSLTLNRTQSTKAFVSRCKNFRGLKPKEYAALHDCAEEISDSVDRLSR 366
Query: 160 SLSSFAAGSSS--------SDVMTWLSAALTNQDTCADGFADT--SGDVKDQMAGNLKDL 209
SL + S+V TW+S+ALT++ TC+DGFA +G +K + + ++
Sbjct: 367 SLKELKMCTIKGEDFTWHISNVETWVSSALTDESTCSDGFAGNAMNGKIKTSIRARMVNI 546
Query: 210 SELVSNCLAI 219
+++ SN L++
Sbjct: 547 AQVTSNALSL 576
>TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)
Length = 826
Score = 90.5 bits (223), Expect = 7e-19
Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 10/189 (5%)
Frame = +2
Query: 41 VLLAVVLIVASAVVLTAVRSRAGGSGASTLRAKPTQAISNTCSKTRFPSLCVKSLLDFPG 100
VLL + L+V S V+ TA + A G + P + I +C TR+P++CV++L +
Sbjct: 68 VLLLLSLLVLSLVLFTAESAVARGPNPN-----PIEFIKFSCRATRYPAVCVQTLTRYAH 232
Query: 101 STAASERDLV--HISLNMTFQHLAKALYSSAAISASMDPRVRAAYDDCLELLDDSVDALG 158
+E+ L ++++M+ + + + PR A DC E +D+SVD L
Sbjct: 233 VIRQNEQQLAITALTVSMSMTKSSASFMKKMTKVKGIKPREHGAVQDCKENMDNSVDRLN 412
Query: 159 RSLSSF---AAGS---SSSDVMTWLSAALTNQDTCADGFADTSGD--VKDQMAGNLKDLS 210
+S+ AAG+ S+V TW+SAALT+Q+TC DGFA D +K + + D S
Sbjct: 413 QSVKEMGLTAAGNVMWRMSNVQTWVSAALTDQNTCLDGFAHPQMDRNLKASIRARVVDAS 592
Query: 211 ELVSNCLAI 219
++ SN LA+
Sbjct: 593 QVTSNALAL 619
>BF177669
Length = 336
Score = 90.5 bits (223), Expect = 7e-19
Identities = 47/101 (46%), Positives = 58/101 (56%)
Frame = +3
Query: 459 GISIHACRVLAAADLKASNESFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFA 518
GISI C + +L +TYLGRPWK YS TV M S +G + GWL W A
Sbjct: 42 GISIQNCSISPFGNLSY----VQTYLGRPWKNYSTTVVMQSTLGSFISPNGWLPWVGNSA 209
Query: 519 LDTLYYGEYMNYGPGAAVGQRVNWPGYRVITSALEASRFTV 559
DT++Y EY N G GA+ RV W G + ITS +AS+FTV
Sbjct: 210 PDTIFYAEYQNVGQGASTKNRVKWKGLKTITSK-QASKFTV 329
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,918,716
Number of Sequences: 28460
Number of extensions: 111516
Number of successful extensions: 622
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of query: 582
length of database: 4,897,600
effective HSP length: 95
effective length of query: 487
effective length of database: 2,193,900
effective search space: 1068429300
effective search space used: 1068429300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0039.5