BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0037a.7
(1027 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partia... 337 e-173
TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, ... 520 e-148
TC9911 similar to UP|AAO25581 (AAO25581) Cellulose synthase, par... 507 e-144
TC20121 similar to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catalyt... 456 e-128
TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, ... 325 3e-89
AV779485 299 2e-81
TC15180 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catal... 283 1e-76
AV779090 243 1e-64
AV410357 217 9e-57
BP038345 210 1e-54
AV773960 204 4e-53
TC11026 similar to UP|AAO25536 (AAO25536) Cellulose synthase, pa... 187 1e-51
TC15250 homologue to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catal... 196 2e-50
AV416600 196 2e-50
TC16614 similar to UP|Q8H2C6 (Q8H2C6) Cellulose synthase, partia... 189 3e-48
AV778804 157 6e-39
BF177827 156 2e-38
BP033786 152 3e-37
TC14362 similar to UP|AAO25581 (AAO25581) Cellulose synthase, pa... 148 5e-36
TC9552 homologue to UP|Q8H2C6 (Q8H2C6) Cellulose synthase, parti... 145 4e-35
>TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partial (28%)
Length = 969
Score = 337 bits (865), Expect(2) = e-173
Identities = 168/182 (92%), Positives = 169/182 (92%), Gaps = 11/182 (6%)
Frame = +3
Query: 137 GLEDDENSQFPPVISGGRS----GEFPVGSHYGEQMLSSSLHKRIHPYPMSESG------ 186
GLEDDENSQFPPVISGGRS GEFPVGSHYGEQMLSSSLHKRIHPYPMSESG
Sbjct: 423 GLEDDENSQFPPVISGGRSRPVSGEFPVGSHYGEQMLSSSLHKRIHPYPMSESGSVAWDE 602
Query: 187 -KEEGWKDRMDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKVPIASSKINPYRMVIVA 245
KEEGWKDRMDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKVPIASSKINPYRMVIVA
Sbjct: 603 KKEEGWKDRMDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKVPIASSKINPYRMVIVA 782
Query: 246 RLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSI 305
RLVILAFFLRYRILNPVHDALGLWLTSIICEIWFA +WILDQFPKWFPIDRET LDRLSI
Sbjct: 783 RLVILAFFLRYRILNPVHDALGLWLTSIICEIWFALTWILDQFPKWFPIDRET*LDRLSI 962
Query: 306 RY 307
RY
Sbjct: 963 RY 968
Score = 291 bits (744), Expect(2) = e-173
Identities = 135/135 (100%), Positives = 135/135 (100%)
Frame = +2
Query: 1 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECG 60
MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECG
Sbjct: 14 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECG 193
Query: 61 FPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKQ 120
FPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKQ
Sbjct: 194 FPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKQ 373
Query: 121 VNVVEALLHGKMSYG 135
VNVVEALLHGKMSYG
Sbjct: 374 VNVVEALLHGKMSYG 418
>TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, partial
(34%)
Length = 1102
Score = 520 bits (1340), Expect = e-148
Identities = 252/365 (69%), Positives = 293/365 (80%), Gaps = 20/365 (5%)
Frame = +3
Query: 628 CFGSRKK--------------LKHAKSDV---NGE--AASLKGMDDDKEVLMSQMNFEKK 668
C+GSRKK +K +S + N E ++G DD++ +LMSQ + EK+
Sbjct: 9 CWGSRKKGRGGNKKYIDKKRAVKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKR 188
Query: 669 FGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHVISCGYEDKTEWGLEVGWIYGSITEDI 728
FGQS +F+ +T ME+GG+PPS++PA +LKEAIHVISCGYEDKTEWG E+GWIYGS+TEDI
Sbjct: 189 FGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDI 368
Query: 729 LTGFKMHCRGWRSIYCMPRRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGY 788
LTGFKMH RGW SIYCMP R AFKG+APINLSDRLNQVLRWALGSIEIF S HCPLWYGY
Sbjct: 369 LTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFMSRHCPLWYGY 548
Query: 789 KEKKLKWLERFAYANTTIYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFIALFS 848
KLK L+R AY NT +YPFTSIPL+AYC LPA CL+T+KFI+P IS FA ++FI LF
Sbjct: 549 -NGKLKGLQRLAYINTVVYPFTSIPLLAYCTLPAFCLITNKFIIPEISNFASMWFILLFV 725
Query: 849 SIIATGVIELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKA 908
SI T ++EL+WSGV IE+WWRNEQFWVIGG SAHLFAV QGLLKVLAGIDTNFTVTSKA
Sbjct: 726 SIFTTAILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKA 905
Query: 909 TD-DEDFGELYAIKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFW 967
D D DF ELY KWT+LLIPPTT+LI+N+VG+V GVS AIN+GYQS GPLFGKLFF+ W
Sbjct: 906 NDEDGDFQELYIFKWTSLLIPPTTVLIVNLVGIVXGVSFAINSGYQSXGPLFGKLFFAIW 1085
Query: 968 VIVHL 972
VI HL
Sbjct: 1086VIAHL 1100
>TC9911 similar to UP|AAO25581 (AAO25581) Cellulose synthase, partial (31%)
Length = 1092
Score = 507 bits (1306), Expect = e-144
Identities = 239/361 (66%), Positives = 282/361 (77%), Gaps = 24/361 (6%)
Frame = +2
Query: 491 REKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTG 550
REKRPGF H KKAGAMNA +R SA+++NAP++LN+DCDHYINNSKA+REAMCF+MDPQ G
Sbjct: 11 REKRPGFDHTKKAGAMNAWMRASAIISNAPYLLNVDCDHYINNSKALREAMCFMMDPQLG 190
Query: 551 KKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYN 610
KK+CYVQFPQRFDGID HDRY+NRN VFFDINMKGLDGIQGP+YVGTGCV+RR ALYGY+
Sbjct: 191 KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVYRRYALYGYD 370
Query: 611 PPKGPKRPKMVS-------CDCCPCFGSRKK------------LKHAKSDVNGEA----- 646
P K P C C PC SRKK +KH+++ A
Sbjct: 371 APAKKKAPSKTCNCWPKWCCLCFPCCASRKKKNANNTKDRKKKVKHSEASKQIHALENME 550
Query: 647 ASLKGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHVISCG 706
A +G +++K ++QM EK+FGQS +FV STL+E GGVP SPA +LKEAI VISCG
Sbjct: 551 AGNEGSNNEKTSNLTQMKLEKRFGQSPVFVASTLLEHGGVPKGVSPASLLKEAIQVISCG 730
Query: 707 YEDKTEWGLEVGWIYGSITEDILTGFKMHCRGWRSIYCMPRRAAFKGTAPINLSDRLNQV 766
YEDKTEWG EVGWIYGS+TEDILTGFKMHC GWRS+YC+P+ AFKG+APINLSDRL+QV
Sbjct: 731 YEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKLPAFKGSAPINLSDRLHQV 910
Query: 767 LRWALGSIEIFFSHHCPLWYGYKEKKLKWLERFAYANTTIYPFTSIPLVAYCVLPAVCLL 826
LRWALGS+EIFFS HCP+WYGY LKWLERF+Y N+ +YP+TS+PL+ YC LPA+CLL
Sbjct: 911 LRWALGSVEIFFSRHCPIWYGY-GGGLKWLERFSYINSVVYPWTSLPLLVYCTLPAICLL 1087
Query: 827 T 827
T
Sbjct: 1088T 1090
>TC20121 similar to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catalytic subunit
(AT5g17420/T10B6_80), partial (21%)
Length = 645
Score = 456 bits (1172), Expect = e-128
Identities = 214/214 (100%), Positives = 214/214 (100%)
Frame = +3
Query: 523 LNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDIN 582
LNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDIN
Sbjct: 3 LNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDIN 182
Query: 583 MKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKLKHAKSDV 642
MKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKLKHAKSDV
Sbjct: 183 MKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKLKHAKSDV 362
Query: 643 NGEAASLKGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHV 702
NGEAASLKGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHV
Sbjct: 363 NGEAASLKGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHV 542
Query: 703 ISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHC 736
ISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHC
Sbjct: 543 ISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHC 644
>TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, partial
(22%)
Length = 743
Score = 325 bits (832), Expect = 3e-89
Identities = 162/251 (64%), Positives = 187/251 (73%), Gaps = 25/251 (9%)
Frame = +3
Query: 510 VRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHD 569
+R AVLTN PF+LNLDCDHYINNSKA+REAMCF+MDP GK VCYVQFPQRFDGID +D
Sbjct: 3 IRHEAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRND 182
Query: 570 RYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGP--KRPKMVSCDCCP 627
RYANRNTVFFDIN++GLDGIQGPVYVGTGCVF R ALYGY PP P K+P ++S
Sbjct: 183 RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLS----S 350
Query: 628 CFGSRKKLKHAKSDVNG-----------------------EAASLKGMDDDKEVLMSQMN 664
FG +K K +KS+ G E G DD+K +LMSQM+
Sbjct: 351 LFGGDRK-KSSKSNKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMS 527
Query: 665 FEKKFGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHVISCGYEDKTEWGLEVGWIYGSI 724
EK+FGQS++FV STLME GGVP S++P +LKEAIHVISCGYEDK+EWG E+GWIYGS+
Sbjct: 528 LEKRFGQSAVFVASTLMENGGVPQSATPEILLKEAIHVISCGYEDKSEWGTEIGWIYGSV 707
Query: 725 TEDILTGFKMH 735
TEDILTGFKMH
Sbjct: 708 TEDILTGFKMH 740
>AV779485
Length = 551
Score = 299 bits (765), Expect = 2e-81
Identities = 139/176 (78%), Positives = 157/176 (88%)
Frame = -1
Query: 341 LSILAVDYPVDKVSCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSE 400
LSILAVDYPVDKV+CY+SDDGA+M TFEALSET+EFAR+WVPFCKK++IEPRAPE YF
Sbjct: 551 LSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARRWVPFCKKYNIEPRAPEWYFGL 372
Query: 401 KIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPEGWIMQDGTPWPGNNTK 460
KIDYL++KV P FV+ERRAMKR+YEEFKV+IN+LVA A KVP +GW MQDGTPWPGNN +
Sbjct: 371 KIDYLRNKVHPAFVRERRAMKRDYEEFKVKINSLVATATKVPEDGWTMQDGTPWPGNNVR 192
Query: 461 DHPGMIQVFLGNSGGVDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVL 516
DHPGMIQVFLG+ G D EGN+LPRLVY SREKRPGF HHKKAGAMNAL+R SA L
Sbjct: 191 DHPGMIQVFLGHDGVRDVEGNELPRLVYCSREKRPGFDHHKKAGAMNALMRASAYL 24
>TC15180 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catalytic subunit,
partial (15%)
Length = 814
Score = 283 bits (724), Expect = 1e-76
Identities = 133/160 (83%), Positives = 147/160 (91%), Gaps = 1/160 (0%)
Frame = +3
Query: 869 WRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDE-DFGELYAIKWTTLLI 927
WRNEQFWVIGGVSAHLFAV QGLLKVLAGIDTNFTVTSK++D++ DF ELY KWTTLLI
Sbjct: 3 WRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDEDGDFEELYMFKWTTLLI 182
Query: 928 PPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTP 987
PPTT+LIIN+VGVVAG+S A+N+GYQSWGPLFGKLFF+FWVIVHLYPFL+GLMGRQNRTP
Sbjct: 183 PPTTLLIINMVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIVHLYPFLRGLMGRQNRTP 362
Query: 988 TIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1027
TIVV+WS+LLASIFSLLWVRIDPF K GP + CGINC
Sbjct: 363 TIVVVWSILLASIFSLLWVRIDPFTTKVTGPKVEECGINC 482
>AV779090
Length = 479
Score = 243 bits (619), Expect = 1e-64
Identities = 111/151 (73%), Positives = 130/151 (85%)
Frame = +2
Query: 862 GVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEDFGELYAIK 921
GV I++ WRNEQ WVIGGVS++LFA+ GLLKVLAG+DTNFTVTSKA DD F ELY K
Sbjct: 5 GVGIDDGWRNEQLWVIGGVSSYLFALFHGLLKVLAGVDTNFTVTSKAADDGAFSELYIFK 184
Query: 922 WTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMG 981
WT+LLI PTT+LIIN+VGVV G+SDAINNGY SWGPL G+LFF WVI+HLYPFLKGL+G
Sbjct: 185 WTSLLIAPTTLLIINMVGVVVGISDAINNGYDSWGPLLGRLFFGLWVIIHLYPFLKGLLG 364
Query: 982 RQNRTPTIVVIWSVLLASIFSLLWVRIDPFV 1012
+Q+R PTIV +WS+LLASI +L+WVRI PFV
Sbjct: 365 KQDRMPTIVWVWSILLASILTLMWVRIKPFV 457
>AV410357
Length = 375
Score = 217 bits (552), Expect = 9e-57
Identities = 102/124 (82%), Positives = 116/124 (93%)
Frame = +3
Query: 299 YLDRLSIRYEREGEPNMLAPVDFFVSTVDPMKEPPLVTANTILSILAVDYPVDKVSCYIS 358
YLDRL++RY+REGEP+ LA VD FVSTVDP+KEPPLVTANT+LSILAVDYPVDKVSCY+S
Sbjct: 3 YLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVS 182
Query: 359 DDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERR 418
DDGA+M TFEAL+ET+EFARKWVPF KK+SIEPRAPE YF+ KIDYLKDKV P+FVK+RR
Sbjct: 183 DDGAAMLTFEALAETSEFARKWVPFAKKYSIEPRAPEWYFALKIDYLKDKVHPSFVKDRR 362
Query: 419 AMKR 422
AMKR
Sbjct: 363 AMKR 374
>BP038345
Length = 528
Score = 210 bits (534), Expect = 1e-54
Identities = 111/177 (62%), Positives = 121/177 (67%), Gaps = 21/177 (11%)
Frame = -1
Query: 507 NALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGID 566
N+LVRVSAVLTN PF+LNLDCDHYINNSKA+REAMCF+MDP GK VCYVQFPQRFDGID
Sbjct: 528 NSLVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGID 349
Query: 567 THDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCC 626
+DRYANRNTVFFDIN++GLDGIQGPVYVGTGCVF R ALYGY+PP PK K
Sbjct: 348 KNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYDPPVKPKHKKNGLLSSL 169
Query: 627 PCFGSRKK--------------LKHAKSDVN-------GEAASLKGMDDDKEVLMSQ 662
C G RKK KHA V E DD+K +LMSQ
Sbjct: 168 -CGGDRKKSSKSQKKGSKNKKSSKHADPTVPVFSLDDIEEGVEGAEFDDEKSLLMSQ 1
>AV773960
Length = 503
Score = 204 bits (520), Expect = 4e-53
Identities = 90/121 (74%), Positives = 104/121 (85%)
Frame = +2
Query: 715 LEVGWIYGSITEDILTGFKMHCRGWRSIYCMPRRAAFKGTAPINLSDRLNQVLRWALGSI 774
+++GWIYGS+TEDILTGFKMHCRGWRSIYCMP R AFKG+APINLSDR +QVLRWALGS+
Sbjct: 77 IQMGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDR*HQVLRWALGSV 256
Query: 775 EIFFSHHCPLWYGYKEKKLKWLERFAYANTTIYPFTSIPLVAYCVLPAVCLLTDKFIMPP 834
EIFFS HCPLWYG +L WL+R AY NT +YPFTS+PLVAY PA+CLLT KFI+P
Sbjct: 257 EIFFSRHCPLWYGLAGGRLSWLQRLAYINTIVYPFTSLPLVAYGSWPAICLLTGKFIIPT 436
Query: 835 I 835
+
Sbjct: 437 V 439
>TC11026 similar to UP|AAO25536 (AAO25536) Cellulose synthase, partial (25%)
Length = 946
Score = 187 bits (475), Expect(2) = 1e-51
Identities = 104/230 (45%), Positives = 142/230 (61%), Gaps = 28/230 (12%)
Frame = +1
Query: 1 MEASAGLVAGSHNRNELVVIHGHEEH---KPLKNLDGQVCEICGDGVGLTVDGDLFVACN 57
MEA+AG+VAGSH RNELV I KPLKNL+GQ+C+ICGD VG++ GD+FVACN
Sbjct: 79 MEANAGMVAGSHKRNELVRIRHDSSDSGPKPLKNLNGQICQICGDNVGISATGDVFVACN 258
Query: 58 ECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQK 117
ECGFPVCRPCYEYER++G+Q+CPQCKTRYKR +GS RV+GD+DE+DVDD+E+EFN
Sbjct: 259 ECGFPVCRPCYEYERKDGNQSCPQCKTRYKRQRGSARVDGDEDEDDVDDLENEFNYVQGN 438
Query: 118 NKQVNVVEALLHGKMSYGRGLEDDENSQFPPVISGGR--SGEFPVGSHYGEQMLSS---- 171
K E +S R + Q P+++ G+ SGE P + + + ++
Sbjct: 439 AKASRQWEEGSDLSLSSRR-----DPQQPIPLLTNGQTVSGEIPCATPDTQSVRTTSGPL 603
Query: 172 -------SLH----KRIHPYPMSESGKE--------EGWKDRMDDWKLQQ 202
SLH ++ P + + K+ WK+R++ WKL+Q
Sbjct: 604 GPGDKAHSLHYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQ 753
Score = 34.3 bits (77), Expect(2) = 1e-51
Identities = 15/27 (55%), Positives = 22/27 (80%)
Frame = +3
Query: 224 PLSRKVPIASSKINPYRMVIVARLVIL 250
P+SR VPI+S++I PYR+VI+ R + L
Sbjct: 864 PMSRIVPISSTQITPYRVVIILR*LFL 944
>TC15250 homologue to UP|Q9SWW6 (Q9SWW6) Cellulose synthase catalytic subunit
(AT5g17420/T10B6_80), partial (9%)
Length = 602
Score = 196 bits (497), Expect = 2e-50
Identities = 93/94 (98%), Positives = 94/94 (99%)
Frame = +3
Query: 934 IINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 993
IINIVGVVAGVSDAI+NGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW
Sbjct: 3 IINIVGVVAGVSDAIHNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 182
Query: 994 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1027
SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC
Sbjct: 183 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 284
>AV416600
Length = 378
Score = 196 bits (497), Expect = 2e-50
Identities = 88/124 (70%), Positives = 108/124 (86%)
Frame = +2
Query: 833 PPISTFAGLYFIALFSSIIATGVIELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLL 892
P +S A + F+ LF SII T V+EL+WSGVSIE+ WRNEQFWVIGGVSAHLFAV QGLL
Sbjct: 5 PVLSNLASVLFLGLFLSIIMTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLL 184
Query: 893 KVLAGIDTNFTVTSKATDDEDFGELYAIKWTTLLIPPTTILIINIVGVVAGVSDAINNGY 952
K+LAG+DTNFTVT+KA +D +FG+LY +KWTTLLIPPTT++++N+VGVVAG SDA+N GY
Sbjct: 185 KMLAGVDTNFTVTAKAAEDGEFGDLYIVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGY 364
Query: 953 QSWG 956
+SWG
Sbjct: 365 ESWG 376
>TC16614 similar to UP|Q8H2C6 (Q8H2C6) Cellulose synthase, partial (23%)
Length = 1174
Score = 189 bits (479), Expect = 3e-48
Identities = 112/275 (40%), Positives = 151/275 (54%), Gaps = 46/275 (16%)
Frame = +3
Query: 16 ELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREG 75
E + G KP+ QVC+IC D VG TVDG+ F+AC+ C FPVCRPCYEYER++G
Sbjct: 348 EAMESEGEAGAKPITTSGAQVCQICSDNVGKTVDGEAFMACDVCAFPVCRPCYEYERKDG 527
Query: 76 SQNCPQCKTRYKRLKGSPRVEGDDDEE-DVDDIEHEFNID-DQKNKQVNVVEALLHGKMS 133
+Q+CPQCKTRYKR KGSP + GD +EE DD +FN D + +N++ + E + +++
Sbjct: 528 NQSCPQCKTRYKRHKGSPAMLGDSEEEGGADDGASDFNYDSEHQNQKQKISERMWGWQLT 707
Query: 134 YGRGLE--------DDENSQFPPVISGGR-SGEFPVGSHYGEQMLSSSL--HKRIHPYPM 182
YGR E + ++ P + SG SGEF GS M S + KR+H P
Sbjct: 708 YGRSEEVGAPNYDKEVSHNHIPRLTSGQEVSGEFSAGSPERLSMASPTAGGGKRVHNLPY 887
Query: 183 SESGKEE--------------GWKDRMDDWKLQQ------------------GNLGPEAD 210
S + WK+R+D WK++Q G++ D
Sbjct: 888 SSDVNQSPNIRVGDSGGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDASTD 1067
Query: 211 EDTDASML-DEARQPLSRKVPIASSKINPYRMVIV 244
D S+L DEARQPLSRKV + SS+INPYRMVI+
Sbjct: 1068VLVDDSLLNDEARQPLSRKVSVPSSRINPYRMVII 1172
>AV778804
Length = 573
Score = 157 bits (398), Expect = 6e-39
Identities = 79/160 (49%), Positives = 102/160 (63%), Gaps = 18/160 (11%)
Frame = +1
Query: 183 SESGKEEG---WKDRMDDWKLQQGN---------------LGPEADEDTDASMLDEARQP 224
SE E G WK+R++ WK + + PE + S A +P
Sbjct: 94 SELNDESGNPIWKNRVESWKEKDKKKKKKKEAPKAENEMPIPPEQQMEEMQSTEAAAAEP 273
Query: 225 LSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWI 284
LS +PI+ +K++PYR VI+ RL+IL F YR+ +PV A GLWLTSIICEIWFAF+W+
Sbjct: 274 LSVIIPISKTKLSPYRFVIIMRLIILGLFFHYRVTHPVDSAFGLWLTSIICEIWFAFAWV 453
Query: 285 LDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDFFVS 324
LDQFPKW PI+RET++DRLS RYE+ EP+ LA VDFFVS
Sbjct: 454 LDQFPKWSPINRETFIDRLSARYEQNVEPSQLAAVDFFVS 573
>BF177827
Length = 494
Score = 156 bits (394), Expect = 2e-38
Identities = 78/154 (50%), Positives = 101/154 (64%), Gaps = 20/154 (12%)
Frame = +2
Query: 648 SLKGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEE-------------GGVPPSSSP-- 692
S +G DD ++ M+ F KKFG S+ + S + E G PP +
Sbjct: 5 SARGDDDSEDEEMNLSTFPKKFGNSTFLIESIPVAEFQGRPLADHPAVKNGRPPGALTIP 184
Query: 693 -----AGMLKEAIHVISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHCRGWRSIYCMPR 747
A + EAI VISC YEDKTEWG VGWIYGS+TED++TG++MH RGW+S+YC+ +
Sbjct: 185 RELLDAATVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTK 364
Query: 748 RAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHH 781
R AF+GTAPINL+DRL+QVLRWA GS+EIFFS +
Sbjct: 365 RDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN 466
>BP033786
Length = 487
Score = 152 bits (383), Expect = 3e-37
Identities = 69/133 (51%), Positives = 94/133 (69%), Gaps = 3/133 (2%)
Frame = -1
Query: 881 SAHLFAVIQGLLKVLAGIDTNFTVTSKATDDED---FGELYAIKWTTLLIPPTTILIINI 937
SAHL AV+QGLLKV+AGI+ +FT+TSK+ +ED F +LY +KW++L+IPP I ++N+
Sbjct: 484 SAHLAAVVQGLLKVMAGIEISFTLTSKSGGEEDEDMFADLYIVKWSSLMIPPIVIAMMNV 305
Query: 938 VGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLL 997
+G+ S I + W G FFSFWV+ HLYPF KGLMG++ +TPTIV +WS L+
Sbjct: 304 IGIAVAFSRTIYSANPQWSKFIGGAFFSFWVLAHLYPFAKGLMGKRGKTPTIVFVWSGLI 125
Query: 998 ASIFSLLWVRIDP 1010
A SLLW+ I P
Sbjct: 124 AITLSLLWIAISP 86
>TC14362 similar to UP|AAO25581 (AAO25581) Cellulose synthase, partial (9%)
Length = 741
Score = 148 bits (373), Expect = 5e-36
Identities = 63/96 (65%), Positives = 84/96 (86%)
Frame = +3
Query: 932 ILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVV 991
+LIINIVG++ G+SDAINN Y SWGPLFG+LFF+ W ++HLYPFLKGL+G+Q+R PTIV+
Sbjct: 3 LLIINIVGIIVGISDAINNVYDSWGPLFGRLFFALWFVLHLYPFLKGLLGKQDRMPTIVL 182
Query: 992 IWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1027
+WS+LLASI +L+WVRI+PFV + GP ++CG+NC
Sbjct: 183 VWSILLASILTLMWVRINPFVSR-DGPVLEICGLNC 287
>TC9552 homologue to UP|Q8H2C6 (Q8H2C6) Cellulose synthase, partial (9%)
Length = 592
Score = 145 bits (365), Expect = 4e-35
Identities = 75/126 (59%), Positives = 88/126 (69%), Gaps = 8/126 (6%)
Frame = +1
Query: 910 DDEDFGELYAIKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGK------LF 963
+D D ELY KWTTLLIPPTT+LIIN+VG VAG + + + W + G
Sbjct: 10 EDXDSAELYLFKWTTLLIPPTTLLIINLVGFVAG--NFVCHTLTRWLWVLGSCSLVRTFS 183
Query: 964 FSFWVIVH--LYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTK 1021
F+FWV LYPFLKGLMGRQNRTPTIVV+WS+LLASIFSLLWVR+DPF + GP +
Sbjct: 184 FAFWVRFFRLLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKVE 363
Query: 1022 LCGINC 1027
CGINC
Sbjct: 364 ECGINC 381
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,785,945
Number of Sequences: 28460
Number of extensions: 320160
Number of successful extensions: 1692
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of query: 1027
length of database: 4,897,600
effective HSP length: 99
effective length of query: 928
effective length of database: 2,080,060
effective search space: 1930295680
effective search space used: 1930295680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0037a.7