TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0037a.3
         (1248 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               139  2e-33
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...   132  4e-31
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...    83  3e-16
CN825682                                                               68  1e-11
AV768875                                                               54  2e-07
TC13560                                                                50  2e-06
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    31  1.1
BP036240                                                               30  1.8
TC8685 similar to UP|Q8W0Z9 (Q8W0Z9) AT3g58560/F14P22_150, parti...    30  1.8
TC11135 homologue to UP|SCRK_SOLTU (P37829) Fructokinase  , part...    29  4.0
TC16340 weakly similar to UP|Q8S304 (Q8S304) Enoyl-CoA hydratase...    28  8.9
TC10662 homologue to UP|CWP1_YEAST (P28319) Cell wall protein CW...    28  8.9

>TC18710 
          Length = 843

 Score =  139 bits (351), Expect = 2e-33
 Identities = 74/190 (38%), Positives = 109/190 (56%), Gaps = 1/190 (0%)
 Frame = +2

Query: 289 EIKAAVFSMRALKAPGPDGLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVL 348
           +++   F +   +  G DG+N LF+Q   D +  SV   I   ++R E   E+N+TL+ L
Sbjct: 143 KLRLLFFLLETSQPRGMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTL 322

Query: 349 IPKIDRPNLLSQYRLIGICNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNII 408
           IPK+  P  ++Q+R I  C  +YK ++K    RLK  + DLISP Q  FI GRQ  DN++
Sbjct: 323 IPKVPHPESINQFRPISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLL 502

Query: 409 IAQEVFHSM-RYLKRKKGWIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVS 467
           I QE FH++ R     +    IK+D+ KAYDR+EW FL+ +LL  G   N+  +I+  VS
Sbjct: 503 IVQEAFHAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVS 682

Query: 468 LSSFQVLFNG 477
             S+    NG
Sbjct: 683 GVSYNYKING 712


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score =  132 bits (331), Expect = 4e-31
 Identities = 77/195 (39%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
 Frame = -3

Query: 199 RVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLYTSP 258
           R+  L  GD NTRFFH ST+ RR  N+I  + D HG+ V     +   A+++F  +Y+S 
Sbjct: 590 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 411

Query: 259 GTDVLYHVRNAFPTLPRDTLL-EISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQSQW 317
               L       P L  D L  ++   +  DEIK AVFSM  LKAPG DG+N LF+Q   
Sbjct: 410 PLQYLRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNR 231

Query: 318 DTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTLTKA 377
           + + + V   I D     E   E+N+TL+ LIPKI     + Q+R I  C+ IYK ++K 
Sbjct: 230 EIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKI 51

Query: 378 LANRLKGVLGDLISP 392
           +  RLK  + +LISP
Sbjct: 50  IVARLKPDMVNLISP 6


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 48/134 (35%), Positives = 65/134 (47%)
 Frame = -3

Query: 145 EIGRRKRHLMRRLEGINSRLRMQHIPYLEKLQKRLWKEYQTTLIQEELLWRQKSRVAWLN 204
           EI   K  L       NS    Q I   +   K LW+       QEEL W Q+SR+ WL 
Sbjct: 384 EIAELKNQLEHLQNYSNSGEDWQEIKQRKMRLKDLWR-------QEELFWSQRSRIKWLK 226

Query: 205 HGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLYTSPGTDVLY 264
            GDKNT+FFH ST+ RR+RN+IE + D  G  V   + +     DF+  +Y S     + 
Sbjct: 225 SGDKNTKFFHASTVQRRERNRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNIT 46

Query: 265 HVRNAFPTLPRDTL 278
              NA P +  ++L
Sbjct: 45  ECLNAVPRVIYESL 4


>CN825682 
          Length = 626

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 40/104 (38%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
 Frame = -3

Query: 24  RIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKFRDCLDDCYLSDLGFKGPPFTW 83
           +  +NT   W   GDFN  L+  +K G    +   +  FRD LD   L DL  KG  FTW
Sbjct: 327 KFKSNTNTFWTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCRFTW 148

Query: 84  -----EGRGVKERLDWALGNDQWLRSFPEASIFHLPQLKSDHKP 122
                 G   KERLD  L N  W   +P A+   LP + SDH P
Sbjct: 147 LSNLRNGLVTKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16


>AV768875 
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 15 RNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGD-PPNLLAMGKFRDCLDDCYLSD 73
          R+ LWQ L  I A+   PW+++GD N  L      GG+  PN     +F   LDDC L D
Sbjct: 4  RDILWQHLSTIRASISIPWLLIGDMNEILFPSQVRGGEFHPN--RAQRFATVLDDCNLID 177

Query: 74 LGFKGPPFTW 83
          LG  G  FTW
Sbjct: 178LGMVGGKFTW 207


>TC13560 
          Length = 571

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 50/180 (27%), Positives = 71/180 (38%)
 Frame = +1

Query: 1032 SHLGFVEVSRNGADSIALSFAPCSIKLTRPSAWSL*LQRWQYCSFRMGEAGCGLGEDQRG 1091
            SHLGF E+S  GA           +  ++P+    *L       F + +  CG+G DQ  
Sbjct: 7    SHLGFHEISWYGASGNVFLLESFPVLDSKPAT*IF*L*PNSEHFF*LDKTRCGMG*DQC* 186

Query: 1092 WSFEQ*FNRQLWRCGSQRGGPLDEGFWSSSWHPWCC*RLLRRVDSSTDKIGASHGHGAAA 1151
            W  +Q     L R   Q    L +GF    W+ + C      +D   D  G  H  G ++
Sbjct: 187  WCGKQLSPG*L*RSAPQCRWELVKGF*MEFWNLFFCQCFPHGIDGCEDGSGGCHEFGLSS 366

Query: 1152 GNC*VRFSRGYQYVKLAFRGSLSPLRAGGLAHPPIAAGPWERYLPAYTEESQLPCRLYS* 1211
             NC*+       +     R    PL++  L + P AA  W    P      Q  C L+S*
Sbjct: 367  RNC*IGLLGSC*FSSFN-RPWFPPLQSNRLRYSPPAARAWGSCFP-ICSAGQFNCGLHS* 540


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial (85%)
          Length = 1917

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 30/95 (31%), Positives = 45/95 (46%), Gaps = 6/95 (6%)
 Frame = -3

Query: 115  QLKSDHKPLLLQLSPIDIDHSQRPNRQVFGEIGRRKRHLM-----RRLEGINSRLR-MQH 168
            ++ + H+PLLL  S I    SQ PNR + GE    +RH       R+    N R R ++H
Sbjct: 1462 KILTQHRPLLLWRS-IGKSRSQSPNRNLLGERSIAERHATDIIGNRKHASSNPRHRNLRH 1286

Query: 169  IPYLEKLQKRLWKEYQTTLIQEELLWRQKSRVAWL 203
             P      +R+      T  +E LLW +++   WL
Sbjct: 1285 TP-----TRRITVH---TAPREHLLWHKRN---WL 1214


>BP036240 
          Length = 567

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/26 (53%), Positives = 15/26 (56%)
 Frame = -2

Query: 1174 SPLRAGGLAHPPIAAGPWERYLPAYT 1199
            SP    G  +P  AAGPW   LPAYT
Sbjct: 278  SPFWVFGCFYPSYAAGPWLDSLPAYT 201


>TC8685 similar to UP|Q8W0Z9 (Q8W0Z9) AT3g58560/F14P22_150, partial (40%)
          Length = 1067

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 22/62 (35%), Positives = 28/62 (44%)
 Frame = +1

Query: 18  LWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKFRDCLDDCYLSDLGFK 77
           L + L +IAA+   P +V GDFN+        G  P  LLAMGK      D  +  L   
Sbjct: 325 LLKGLEKIAASADIPMLVCGDFNS------NPGSAPHALLAMGKVDPSHPDLAIDPLSIL 486

Query: 78  GP 79
            P
Sbjct: 487 RP 492


>TC11135 homologue to UP|SCRK_SOLTU (P37829) Fructokinase  , partial (33%)
          Length = 402

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 115 QLKSDHKPLLLQLSPIDIDHSQRPNRQVFGEIGRRKRHLMRRLEGINSRL 164
           Q + +H   L Q SP+   H  RP+RQ+  +  R + H +RRL    SRL
Sbjct: 39  QFRENHG--LQQRSPL---HRHRPHRQLRRDANRLRPHRLRRLPRRGSRL 173


>TC16340 weakly similar to UP|Q8S304 (Q8S304) Enoyl-CoA hydratase, partial
            (43%)
          Length = 631

 Score = 28.1 bits (61), Expect = 8.9
 Identities = 14/37 (37%), Positives = 22/37 (58%)
 Frame = +3

Query: 1038 EVSRNGADSIALSFAPCSIKLTRPSAWSL*LQRWQYC 1074
            ++ R G  S+ L FAPC+ KL +  + + *L   +YC
Sbjct: 402  QLPR*GTASLPLPFAPCTGKLPKMKSATF*LCTLRYC 512


>TC10662 homologue to UP|CWP1_YEAST (P28319) Cell wall protein CWP1
           precursor, partial (6%)
          Length = 937

 Score = 28.1 bits (61), Expect = 8.9
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +3

Query: 148 RRKRHLMRRLEGINSRLRMQHIPYLEKLQKRLWKEYQT 185
           RR RHL RRL  +  RLR    P LE    RL +  QT
Sbjct: 246 RRLRHLRRRLIFLLRRLRQIPRPLLEPPPPRLRRHRQT 359


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.343    0.152    0.539 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,273,200
Number of Sequences: 28460
Number of extensions: 401669
Number of successful extensions: 2615
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2609
length of query: 1248
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1147
effective length of database: 2,023,140
effective search space: 2320541580
effective search space used: 2320541580
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 61 (28.1 bits)