BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0037a.11
(685 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP084855 112 3e-25
BP033881 101 5e-22
BP070082 87 1e-17
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa... 34 0.068
TC12505 similar to UP|BAD00698 (BAD00698) Sericin 1A, partial (5%) 33 0.12
TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein... 33 0.15
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 33 0.20
TC14455 homologue to UP|CAC83767 (CAC83767) Allene oxide cyclase... 32 0.44
TC16191 similar to GB|AAO39946.1|28372928|BT003718 At1g49880 {Ar... 31 0.58
TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), p... 31 0.58
TC13834 homologue to UP|Q948R9 (Q948R9) RPS6-like protein (AT3g1... 30 0.99
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 30 0.99
BP052482 30 1.3
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 30 1.3
BP034655 30 1.3
AV414308 30 1.3
BP041085 30 1.3
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 30 1.7
AV777513 29 2.2
TC19860 weakly similar to UP|Q41064 (Q41064) Thiolprotease , par... 29 2.2
>BP084855
Length = 373
Score = 112 bits (279), Expect = 3e-25
Identities = 56/83 (67%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Frame = -2
Query: 604 QINVVEPGFDLSRIGWLKEIKDGQVVGDDDISLDLLPQFDDESEPEEDG-EDGNEQHRNE 662
QI+VVEP FDLS IG+LKEIKDGQVVGDDD+ +DLLPQF+ ESE EE+ EDG+ + +N
Sbjct: 372 QISVVEPDFDLSCIGFLKEIKDGQVVGDDDVDIDLLPQFNSESEYEEEKCEDGHGEDKNG 193
Query: 663 DQEKEDPQAGTSQGNNANNENLA 685
D+ + DP+A SQ NNANNENLA
Sbjct: 192 DEGENDPKAAASQDNNANNENLA 124
>BP033881
Length = 528
Score = 101 bits (251), Expect = 5e-22
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +2
Query: 1 MKLPRMSLPNASLSSLELSSPSTEEEVVAPSIIEIHSSPSTHDDSGPAGSVDSILSSNGD 60
MKLP MSL + S+SSLELSSPSTE + APS+IEI SSPS H+DSGPA SVDS+LSSNGD
Sbjct: 314 MKLPSMSLNSFSVSSLELSSPSTEGGIYAPSVIEIQSSPSIHEDSGPADSVDSVLSSNGD 493
Query: 61 LSSPEWRS 68
LSS EWR+
Sbjct: 494 LSSXEWRT 517
>BP070082
Length = 489
Score = 86.7 bits (213), Expect = 1e-17
Identities = 39/54 (72%), Positives = 49/54 (90%)
Frame = -1
Query: 594 YAQGFLAAKEQINVVEPGFDLSRIGWLKEIKDGQVVGDDDISLDLLPQFDDESE 647
Y +GF+AAKEQ++VV+P FDLSRIG+LK+I+DGQV+G DDI LDLLP+FD ESE
Sbjct: 345 YVEGFVAAKEQVSVVDPDFDLSRIGFLKKIQDGQVIGHDDIDLDLLPKFDSESE 184
>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (4%)
Length = 756
Score = 34.3 bits (77), Expect = 0.068
Identities = 17/40 (42%), Positives = 22/40 (54%)
Frame = -2
Query: 630 GDDDISLDLLPQFDDESEPEEDGEDGNEQHRNEDQEKEDP 669
GD+D S + D+E E E + E+G E ED E EDP
Sbjct: 350 GDEDGSRFHEIENDNEGEEEVEAEEGEEDEEEEDDEDEDP 231
Score = 27.7 bits (60), Expect = 6.4
Identities = 12/55 (21%), Positives = 23/55 (41%)
Frame = -2
Query: 628 VVGDDDISLDLLPQFDDESEPEEDGEDGNEQHRNEDQEKEDPQAGTSQGNNANNE 682
V+GDD + ++ + E EDG+ H E+ + + + +G E
Sbjct: 419 VIGDDGAETTSVDPVEENARAEPGDEDGSRFHEIENDNEGEEEVEAEEGEEDEEE 255
>TC12505 similar to UP|BAD00698 (BAD00698) Sericin 1A, partial (5%)
Length = 569
Score = 33.5 bits (75), Expect = 0.12
Identities = 20/82 (24%), Positives = 37/82 (44%)
Frame = -3
Query: 599 LAAKEQINVVEPGFDLSRIGWLKEIKDGQVVGDDDISLDLLPQFDDESEPEEDGEDGNEQ 658
+A E +N + D+ + E ++ + V DDD + +LP S P+ +D +
Sbjct: 549 VAQSEALNTADVA-DVDDVNENGEEEEEEEVDDDDDDVQVLPAAATSSHPKRKRDDDADD 373
Query: 659 HRNEDQEKEDPQAGTSQGNNAN 680
ED++ ED A + A+
Sbjct: 372 REEEDEDDEDVVAFSKPSQEAS 307
>TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein, partial
(15%)
Length = 521
Score = 33.1 bits (74), Expect = 0.15
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 643 DDESEPEEDGEDGNEQHRNEDQEKEDPQAGTSQGNN 678
DDE + EDGED +E +EDQ+ EDP+ + + ++
Sbjct: 183 DDEMQDSEDGED-SEGSEDEDQDGEDPEEASLEDDD 287
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 32.7 bits (73), Expect = 0.20
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Frame = -2
Query: 644 DESEPEEDGEDGNEQHRNEDQEKEDP----------QAGTSQGNNANNEN 683
++ + + +GEDGN+ +ED + + P + G GNN+NN++
Sbjct: 641 EDKQHDAEGEDGNDDEGDEDDDGDGPFGEGEEDLSSEDGAGYGNNSNNKS 492
Score = 30.8 bits (68), Expect = 0.76
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 2/53 (3%)
Frame = -2
Query: 621 KEIKDGQVVGDDDISLDLLPQFDDESEPEEDGEDGNEQHRNEDQEK--EDPQA 671
+E +DG+ DDD + + DD E EE E+G E+ NED+E+ ED +A
Sbjct: 425 EEDEDGEDQEDDDDDDEDDDEEDDGGEDEE--EEGVEEEDNEDEEEDEEDEEA 273
Score = 29.6 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 630 GDDDISLDLLPQFDDESEPEEDGE--DGNEQHRNEDQEKED 668
G+D+ D Q DD+ + E+D E DG E E E+ED
Sbjct: 434 GEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEED 312
Score = 28.1 bits (61), Expect = 4.9
Identities = 10/36 (27%), Positives = 20/36 (54%)
Frame = -2
Query: 640 PQFDDESEPEEDGEDGNEQHRNEDQEKEDPQAGTSQ 675
P+ + E E +EDGED + +++ + E+ G +
Sbjct: 446 PEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDE 339
Score = 27.7 bits (60), Expect = 6.4
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 643 DDESEPEEDGEDGNEQHRNEDQE----KEDPQAGTSQGNNANNE 682
D+E E ED ED ++ ++D+E +++ + G + +N + E
Sbjct: 428 DEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEE 297
>TC14455 homologue to UP|CAC83767 (CAC83767) Allene oxide cyclase precursor
, partial (79%)
Length = 990
Score = 31.6 bits (70), Expect = 0.44
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = +2
Query: 224 NMSRFTALKSHYKVWQKKYFKVMESPEIKNLFRDSDNNPLFPFYWTKN---------PRR 274
N ++ + S + + K FK+ SP++ + R S N F+++ N P +
Sbjct: 101 NQTQNQVVSSLSQSFPTKSFKISASPQVPSTKRSSKNTTTTAFFFSNNSKQDHDSSRPAK 280
Query: 275 KISVSYDALDESEQGVADYLR--TLPVISGHDLIEASK---SGTLNQ 316
+S ++E ++G YLR PV S DL+ S SG L +
Sbjct: 281 VQELSVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYSGNLEK 421
>TC16191 similar to GB|AAO39946.1|28372928|BT003718 At1g49880 {Arabidopsis
thaliana;}, partial (60%)
Length = 587
Score = 31.2 bits (69), Expect = 0.58
Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 6/46 (13%)
Frame = +2
Query: 155 FSPFICHVLSFLN------VAPCQLQPNAWGFLRCFEILCEHLSFT 194
FS ++CHV + +N V PC+ WG L C + CE + T
Sbjct: 269 FSHWLCHVHNVVNRSLGKPVFPCERVDARWGKLECEQKACEIIGST 406
>TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), partial (7%)
Length = 528
Score = 31.2 bits (69), Expect = 0.58
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 313 TLNQF--FTTMGKGKVDANPIKMKEYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPK 370
TL+ F +TMG+ K DA + E +A A + + +E ++KKKN+ + PK
Sbjct: 24 TLSTFPSISTMGR-KHDA--VAASEPVADEAPNSPELQSEKKKKKKNKDKHQNGEKTSPK 194
Query: 371 RQKTSGAAGGKPLHQSTLDSKSRPAEKKKGHDN 403
R+ + +Q+ +S+ + +KK+ HDN
Sbjct: 195 RKLE------ELDNQNGTESEKKKKKKKEKHDN 275
>TC13834 homologue to UP|Q948R9 (Q948R9) RPS6-like protein
(AT3g17170/K14A17_29), partial (13%)
Length = 517
Score = 30.4 bits (67), Expect = 0.99
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 2/44 (4%)
Frame = +1
Query: 631 DDDISLDLLPQFDDESEPEE--DGEDGNEQHRNEDQEKEDPQAG 672
DDD +L +DD+ + EE DGEDG+ + D +++D +G
Sbjct: 151 DDDDDEELDEDYDDDWDGEEDADGEDGDAEFIVIDDDQDDVDSG 282
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 30.4 bits (67), Expect = 0.99
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 631 DDDISLDLLPQFDDESEPEEDGEDGNEQHRNEDQEKEDPQAGTSQGNNANNENLA 685
DDD D D ESE EED +D ++D + EDP G G +++++++
Sbjct: 57 DDDSDPD-----DAESEDEEDDDD------DDDGDDEDPLLGPGLGRESDSDDMS 188
>BP052482
Length = 498
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/78 (29%), Positives = 36/78 (45%), Gaps = 1/78 (1%)
Frame = +3
Query: 354 KKKNEGTSGSDNVRDPKRQKTSGAAGGKPLHQSTLDSKSRPAE-KKKGHDNVPPPQQDSS 412
++ +S S DP R TS P HQ S+ + +K+G D PPQ S
Sbjct: 228 RRSRSFSSSSFQFNDPTRSPTSSNIATDPYHQFEHSSRCQALNFEKQGQDK--PPQLAGS 401
Query: 413 TLINRPSTPFGQAGPSSA 430
++ N S + +AG +S+
Sbjct: 402 SIQN--SKRYERAGSASS 449
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 30.0 bits (66), Expect = 1.3
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 642 FDDESEPEEDGEDGNEQHRNEDQEKED 668
F+D E +EDG++ ++ ++D+E+ED
Sbjct: 761 FEDIEEDDEDGDEDEDEDDDDDEEEED 841
Score = 28.9 bits (63), Expect = 2.9
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Frame = +2
Query: 550 LLQKTKSLKEAINDKHTAVQAKYQKLEKKYDRLNASILGRASLQYAQGFLAAKEQINVVE 609
L QK K K+T K +K E ++ N + A +E N++E
Sbjct: 500 LTQKILKKKPKKGSKNTKPITKTEKCESFFNFFNPPQVPEDDDDIDDD--AVEELQNLME 673
Query: 610 PGFDLSR----------IGWLK---EIKDGQVVGDDDISLDLLPQFDDESEPEEDGEDGN 656
+D+ + W E D + + +DD D DD+ + EE+ +D +
Sbjct: 674 HDYDIGSTIRDKIIPHAVSWFTGEAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDD 853
Query: 657 EQHRNEDQEKEDPQAGT 673
++ E + K ++G+
Sbjct: 854 DEDDEEGEGKSKSKSGS 904
>BP034655
Length = 517
Score = 30.0 bits (66), Expect = 1.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 629 VGDDDISLDLLPQFDDESEPEEDGEDGNEQHRNEDQEKED 668
+ DDD + + ++E E EE+ E+ E+ +D+E ED
Sbjct: 130 LSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDED 249
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 632 DDISLDLLPQFDDESEPEEDGEDGNEQHRNEDQEKEDPQAGTSQGNNANNENL 684
D + + L+P + ++ E EDGN++ R E+ E G SQGN ++
Sbjct: 316 DSVEVILIPDSEQQNYSE---EDGNKRRRIEEGEAPTSSLG-SQGNELTGTDI 462
>AV414308
Length = 389
Score = 30.0 bits (66), Expect = 1.3
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +3
Query: 368 DPKRQKTSGAAGGKPLHQSTLDSKSRPAEKKKGHDNVPPPQQDSST-----LINRPSTPF 422
D K + P+H + K+ + PQ+ S+T L+ P +P
Sbjct: 3 DLKLNQKDNPHSSNPIHSTLPWRKNSKSSSNPTPTTGATPQKKSTTSNKESLLQNPPSPP 182
Query: 423 GQAGPSSAIGGEAPPP 438
+A PSS G PPP
Sbjct: 183 PEASPSSPGPGSPPPP 230
>BP041085
Length = 449
Score = 30.0 bits (66), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (50%)
Frame = +1
Query: 335 EYLAQSAAAAKKRAAETEQKKKNEGTSGSDNVRDPKRQKTSGA 377
+YL Q A++ AA + K N GTS S N + Q SGA
Sbjct: 58 QYLRQQLLEAEEAAAREMEPKSNHGTSNSFNNQGGGGQNFSGA 186
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 29.6 bits (65), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 19/63 (30%)
Frame = +1
Query: 629 VGDDDISLDLLPQFDDESEPEEDGEDGNEQH-------------------RNEDQEKEDP 669
V DD+S + P+ DE E EED ++ EQH +ED+++E+
Sbjct: 463 VEGDDLSF-ISPESADEDEDEEDEDEDQEQHGRHSRPSGRRTRRPSREEDEDEDEDEEER 639
Query: 670 QAG 672
Q G
Sbjct: 640 QGG 648
>AV777513
Length = 334
Score = 29.3 bits (64), Expect = 2.2
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +2
Query: 405 PPPQQDSSTLINRPSTPFGQAGPSSAIGGEAPPPLLNLSDPHFNGL 450
P P SSTL +P +PF PS+ + P L+ + HF+ L
Sbjct: 197 PSPSTPSSTLKPKPHSPF--PSPSTTLSRAPSSPSLSQTTHHFSSL 328
>TC19860 weakly similar to UP|Q41064 (Q41064) Thiolprotease , partial (16%)
Length = 571
Score = 29.3 bits (64), Expect = 2.2
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +3
Query: 202 LFYKSVTTKPTSVKWV------PLLARKNMSRFTALKSHYKVWQKKYFKVMESPE 250
L Y T S W+ P + +KN S A + ++ WQK++ + E+PE
Sbjct: 66 LTYTFFTLLMVSNLWIISASECPPMHKKNSSNLEAKRKRFESWQKQHGRKYENPE 230
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,641,763
Number of Sequences: 28460
Number of extensions: 184500
Number of successful extensions: 1111
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of query: 685
length of database: 4,897,600
effective HSP length: 96
effective length of query: 589
effective length of database: 2,165,440
effective search space: 1275444160
effective search space used: 1275444160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0037a.11