TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0036c.6
         (70 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17800 similar to UP|KIWI_ARATH (O65154) RNA polymerase II tran...   145  1e-36
BP084986                                                               41  4e-05
AU089366                                                               25  3.7
TC9940 weakly similar to UP|Q9LHB1 (Q9LHB1) Transcription factor...    25  3.7
TC18689                                                                24  6.2
TC11180                                                                24  6.2
TC15006 weakly similar to UP|P93333 (P93333) PR10-1 protein (Cla...    23  8.2
TC9138 similar to UP|Q8VX01 (Q8VX01) Casein kinase II alpha subu...    23  8.2
TC16901 similar to GB|BAB03049.1|9294683|AP001305 syringomycin b...    23  8.2

>TC17800 similar to UP|KIWI_ARATH (O65154) RNA polymerase II transcriptional
           coactivator KIWI, partial (60%)
          Length = 592

 Score =  145 bits (367), Expect = 1e-36
 Identities = 70/70 (100%), Positives = 70/70 (100%)
 Frame = +2

Query: 1   DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
           DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI
Sbjct: 149 DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 328

Query: 61  EEIDKAVNES 70
           EEIDKAVNES
Sbjct: 329 EEIDKAVNES 358


>BP084986 
          Length = 515

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 32  FYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNE 69
           +Y KDGK +P  KGISLT +QW+  +  +   +KA+ +
Sbjct: 515 YYRKDGKDLPTSKGISLTEEQWSTFKKSVPAKEKAIEK 402


>AU089366 
          Length = 717

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 44  KGISLTMDQWNVLRNHIEEIDKAVNE 69
           K I     Q  +LR H++ +D AVN+
Sbjct: 211 KNIDGLASQLKILRRHVDVLDSAVNK 288


>TC9940 weakly similar to UP|Q9LHB1 (Q9LHB1) Transcription factor X1-like
           protein, partial (18%)
          Length = 577

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 14  RRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLR 57
           R ++  N  GR +      Y K+G++   K+G+ + + QW + +
Sbjct: 255 REINEYNPSGRYITSELWNY-KEGRRATSKEGVQVLLKQWKLYK 383


>TC18689 
          Length = 397

 Score = 23.9 bits (50), Expect = 6.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 49  TMDQWNVLRNHIEEIDKAVNE 69
           +M  W +L+ H  EI + +NE
Sbjct: 175 SMRIWEILKTHWNEISRMINE 237


>TC11180 
          Length = 640

 Score = 23.9 bits (50), Expect = 6.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 54 NVLRNHIEEIDKAV 67
          N+LRN +EEID A+
Sbjct: 16 NILRNKLEEIDVAI 57


>TC15006 weakly similar to UP|P93333 (P93333) PR10-1 protein (Class 10 PR
           protein), partial (75%)
          Length = 1047

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 29  IREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEI 63
           I+  ++ DG   PG      T+D +N LR  + EI
Sbjct: 258 IKHGHLLDGSSSPGSFDEFNTLDGFNNLREDVVEI 154


>TC9138 similar to UP|Q8VX01 (Q8VX01) Casein kinase II alpha subunit
           precursor  , partial (24%)
          Length = 693

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 27  VDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
           +++ EFY     ++   KG+   + QW VL +HI
Sbjct: 315 LNVFEFYYFLHFELD*SKGVPWLL*QWGVLGDHI 214


>TC16901 similar to GB|BAB03049.1|9294683|AP001305 syringomycin
          biosynthesis enzyme-like protein {Arabidopsis
          thaliana;}, partial (16%)
          Length = 533

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 10/34 (29%), Positives = 17/34 (49%)
 Frame = +3

Query: 25 IVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRN 58
          I+ D      ++   +P +KG  L +D W VL +
Sbjct: 12 IIYDCLNILEEESVAIPWRKGDVLLLDNWAVLHS 113


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,126,150
Number of Sequences: 28460
Number of extensions: 10631
Number of successful extensions: 47
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of query: 70
length of database: 4,897,600
effective HSP length: 46
effective length of query: 24
effective length of database: 3,588,440
effective search space: 86122560
effective search space used: 86122560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)