TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0036c.5
         (55 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP459593 Pge1 protein [Lotus japonicus]                                61  4e-11
AV769506                                                               38  5e-04
CB828260                                                               25  2.4
TC9130 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic pro...    25  4.1
TC19489 similar to UP|Q8GSD7 (Q8GSD7) mRNA capping enzyme-like p...    23  9.1

>NP459593 Pge1 protein [Lotus japonicus]
          Length = 633

 Score = 61.2 bits (147), Expect = 4e-11
 Identities = 26/43 (60%), Positives = 34/43 (78%)
 Frame = +1

Query: 3   VFDWAQLVGKNNDFVVIMIRSDYGTLNGKESLTLGCEQGGKFK 45
           + DWA+ VGK N +VVI+IRSDYG+   K  +TLGCE+GGK+K
Sbjct: 487 LIDWARCVGKENGYVVIVIRSDYGSAKRKPLITLGCERGGKYK 615


>AV769506 
          Length = 345

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 29/47 (60%), Gaps = 1/47 (2%)
 Frame = +1

Query: 3   VFDWAQLVGKNNDFVVIMIRSDYGTLNGKES-LTLGCEQGGKFKPYK 48
           + +W   +   N +V ++ +SDYG    +++ + LGCE+ GK+ PY+
Sbjct: 61  LINWVHGIAIENGYVTLITKSDYGGNESRKAYVMLGCEKHGKYVPYR 201


>CB828260 
          Length = 557

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = +3

Query: 26  GTLNGKESLTLGCEQGGKFKPYK 48
           G  + K  + LGCE+ GK+ PY+
Sbjct: 162 GNGSRKAYVMLGCEKHGKYVPYR 230


>TC9130 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic protein 13
           (Fragment), partial (5%)
          Length = 728

 Score = 24.6 bits (52), Expect = 4.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 11  GKNNDFVVIMIRSDYGTLNGKESLTLGCEQGGKFKPYKGNFDIR 54
           G   D    +IR  +GT  G  SLTLG    G       +F +R
Sbjct: 235 GGGGDIGSTLIR--FGTTAGDVSLTLGLRHAGNTPEKTNSFSVR 360


>TC19489 similar to UP|Q8GSD7 (Q8GSD7) mRNA capping enzyme-like protein,
           partial (8%)
          Length = 587

 Score = 23.5 bits (49), Expect = 9.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 42  GKFKPYKGNFDIR 54
           GKF P +GNFDI+
Sbjct: 563 GKF*PRQGNFDIK 525


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.143    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,428
Number of Sequences: 28460
Number of extensions: 6321
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of query: 55
length of database: 4,897,600
effective HSP length: 31
effective length of query: 24
effective length of database: 4,015,340
effective search space: 96368160
effective search space used: 96368160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)