BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0035.10
(150 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP033006 32 0.046
BP046590 28 0.67
BI417302 28 0.67
TC13349 27 1.1
BP069657 27 1.5
TC19172 27 2.0
TC13868 similar to UP|AAR83121 (AAR83121) Aminodeoxychorismate s... 26 2.5
TC12719 homologue to UP|ZFP1_ARATH (Q42485) Zinc finger protein ... 26 2.5
TC8852 similar to UP|O24046 (O24046) 2-dehydro-3-deoxyphosphohep... 26 2.5
AV772856 26 2.5
TC10928 weakly similar to PIR|G96668|G96668 protein F1N19.7 [imp... 26 2.5
TC11422 UP|NIA_LOTJA (P39869) Nitrate reductase [NADH] (NR) , c... 26 2.5
TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%) 26 2.5
TC12716 weakly similar to PIR|T49241|T49241 pectinesterase-like ... 26 3.3
TC16344 similar to UP|AAS44254 (AAS44254) Nucleoside transporter... 26 3.3
TC18024 weakly similar to PIR|F86410|F86410 protein F3M18.12 [im... 26 3.3
TC16540 similar to UP|Q93WR7 (Q93WR7) MAP kinase kinase, partial... 26 3.3
TC15337 26 3.3
BP047997 25 4.3
TC15796 similar to UP|Q948T1 (Q948T1) Two-pore calcium channel, ... 25 4.3
>BP033006
Length = 592
Score = 32.0 bits (71), Expect = 0.046
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 1/48 (2%)
Frame = -2
Query: 92 GSLSHADTRATSAKATCLLSW-FLLHQSLSRSLTYPQCKVQTPKKYQV 138
G +S R ++ + C S+ F LHQ+L S+ Y +C V T K YQ+
Sbjct: 396 GGISTKYNRKGTSPSWCNSSYSFGLHQTLFCSMEYYRCSVPTSKNYQI 253
>BP046590
Length = 498
Score = 28.1 bits (61), Expect = 0.67
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 32 KKKKKNTTQHNDRDSSELRDQVSIHPSS-SSFIITMLLGPSLHQ 74
+KKKKN T HN +E + HPS+ + F +++ P+L +
Sbjct: 98 QKKKKNLTHHNGNQDNEYK-----HPSTHNDFDVSLFPPPTLRK 214
>BI417302
Length = 499
Score = 28.1 bits (61), Expect = 0.67
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = -1
Query: 3 RLVPSLTRMKSGNHRPCCSYITLHMQRKLKKKKKNTTQHND 43
R+ P ++ + R C + ++K KKK+K T +ND
Sbjct: 172 RVTPMESKAQRERERECVGFDVRGNKKKKKKKRKKPTHYND 50
>TC13349
Length = 512
Score = 27.3 bits (59), Expect = 1.1
Identities = 13/40 (32%), Positives = 24/40 (59%)
Frame = -3
Query: 3 RLVPSLTRMKSGNHRPCCSYITLHMQRKLKKKKKNTTQHN 42
R +P+ T+ K N + T+H+ R+LK K ++ +QH+
Sbjct: 477 RNLPNTTKGKDDNTTLDITLNTVHL*RRLKLKNQSASQHS 358
>BP069657
Length = 424
Score = 26.9 bits (58), Expect = 1.5
Identities = 14/57 (24%), Positives = 28/57 (48%)
Frame = +3
Query: 16 HRPCCSYITLHMQRKLKKKKKNTTQHNDRDSSELRDQVSIHPSSSSFIITMLLGPSL 72
+R C ++H + K+K ++ RDS +QVS H S + + ++ G ++
Sbjct: 108 NRARCIQSSIHQWMHVSKEKNIDFKNAPRDSXVR*EQVSSHXPSVNLFLVLVXGETI 278
>TC19172
Length = 544
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 16 HRPCCSYITLHMQRKLKKKKKNTTQHNDRDS 46
H+ S I+LH+ RK N QH+++ +
Sbjct: 509 HKSMVSQISLHLSRKNNNDDNNADQHSNKQT 417
>TC13868 similar to UP|AAR83121 (AAR83121) Aminodeoxychorismate
synthase/glutamine amidotransferase, partial (11%)
Length = 547
Score = 26.2 bits (56), Expect = 2.5
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = -2
Query: 15 NHRPCCSYITLHMQRKLKKKKK 36
N R CC + H+Q K+KK+
Sbjct: 315 NVRVCCQLVPSHLQESYKRKKR 250
>TC12719 homologue to UP|ZFP1_ARATH (Q42485) Zinc finger protein 1, partial
(18%)
Length = 548
Score = 26.2 bits (56), Expect = 2.5
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = +2
Query: 32 KKKKKNTTQHNDRDSSELRD-------QVSIHPSSSSFIITMLLGPSLHQCGWMD-GCMP 83
KKKKKN Q + + E +D +++ + S + GP L+ +D G P
Sbjct: 164 KKKKKNIEQSVEEEEEEEKDTKVESLLDLNVCSTDDSALDCSTEGPELNLITCLDVGSSP 343
Query: 84 TRNSYDTSG-SLSHADTRATS 103
NS +T+ S A+ R S
Sbjct: 344 DANSSETNPLGCSEAEPRVFS 406
>TC8852 similar to UP|O24046 (O24046) 2-dehydro-3-deoxyphosphoheptonate
aldolase precursor , partial (31%)
Length = 808
Score = 26.2 bits (56), Expect = 2.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 11 MKSGNHRPCCSYITLHMQRKLKKKKKNTTQHNDRDSSE 48
+++GN R CSY++ +R L K +T+ S E
Sbjct: 373 LRAGNRRRLCSYLSTRARRSLTPCSKPSTRSRRSCSPE 486
>AV772856
Length = 468
Score = 26.2 bits (56), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 102 TSAKATCLLSWFLLHQSLSRSLTYP 126
+S ATCL+SWF L +S + P
Sbjct: 231 SSPGATCLISWFFLFHLISLTCCNP 157
>TC10928 weakly similar to PIR|G96668|G96668 protein F1N19.7 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 590
Score = 26.2 bits (56), Expect = 2.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 39 TQHNDRDSSELRDQVSIHPSSSSFIITMLLGPSLHQCGWMDGCMPTR 85
TQH S+ + Q P ++ I T+ PSLH C D PTR
Sbjct: 479 TQHQLATSTTI--QTRHKPGPTTPITTISPYPSLHTCRIQDPTQPTR 345
>TC11422 UP|NIA_LOTJA (P39869) Nitrate reductase [NADH] (NR) , complete
Length = 2932
Score = 26.2 bits (56), Expect = 2.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 85 RNSYDTSG-SLSHADTR--ATSAKATCLLSWFLLHQSLSRSLTYP 126
R+ +DT+ S + TR T A T LL W +LHQ +L YP
Sbjct: 1060 RSHHDTAS*SRNLCSTR**YTPACTTILLHWQVLHQHGKEALYYP 926
>TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)
Length = 826
Score = 26.2 bits (56), Expect = 2.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 18 PCCSYITLHMQRKLKKKKKNTTQHNDRDSSELRDQV 53
PCC H R ++ T H+ DS + DQV
Sbjct: 193 PCCVRPNSHSIRARDSPERAATSHHCLDSEHVHDQV 300
>TC12716 weakly similar to PIR|T49241|T49241 pectinesterase-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(11%)
Length = 709
Score = 25.8 bits (55), Expect = 3.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 18 PCCSYITLHMQRKLKKKKKNTTQHNDRDSS 47
PCC Y+ +H + L KK ++ + +++ S
Sbjct: 92 PCCLYLRIHPCKSLDKKVQHLSMFSNQSLS 181
>TC16344 similar to UP|AAS44254 (AAS44254) Nucleoside transporter, NupC
family, partial (4%)
Length = 604
Score = 25.8 bits (55), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 107 TCLLSWFLLHQSLSRSLTYPQC-KVQTPKKY 136
TC SWFL HQ L + C KV TP ++
Sbjct: 281 TCPRSWFLFHQLLQ---CFCSCMKVMTPLRF 198
>TC18024 weakly similar to PIR|F86410|F86410 protein F3M18.12 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(4%)
Length = 485
Score = 25.8 bits (55), Expect = 3.3
Identities = 12/43 (27%), Positives = 21/43 (47%)
Frame = +3
Query: 7 SLTRMKSGNHRPCCSYITLHMQRKLKKKKKNTTQHNDRDSSEL 49
S+ R +S +H P C+ I + + T QH + +S+L
Sbjct: 210 SVQRCRSEHHNPTCAQIRDFFPKPRTNPRVTTHQHRAQTASDL 338
>TC16540 similar to UP|Q93WR7 (Q93WR7) MAP kinase kinase, partial (30%)
Length = 672
Score = 25.8 bits (55), Expect = 3.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 20 CSYITLHMQRKLKKKKKNTTQHNDRDSSELRDQV 53
C+++TLH+ L K + TQ N S L + V
Sbjct: 471 CNFLTLHLHEFLTKLLHSITQQNTESSR*LYEPV 370
>TC15337
Length = 1005
Score = 25.8 bits (55), Expect = 3.3
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = -1
Query: 47 SELRDQVSIHPSSSSFIITMLLGPSLHQCGWMDGCMPTRNSYDTSGSLSHADTRATSAKA 106
S + Q+ I P + F+ +L L C +R+S T +KA
Sbjct: 255 SASKQQLRIVPDTPFFLSELLESNCLIICFKRPRFGSSRSSLPARCFEMLTSIEPTCSKA 76
Query: 107 TCLLSWFLLHQSLSRSLTY 125
+ LSW +L L+ +TY
Sbjct: 75 SSSLSWVVLQNDLTSFITY 19
>BP047997
Length = 337
Score = 25.4 bits (54), Expect = 4.3
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -3
Query: 16 HRPCCSYITLHMQRKLKKKKKNTTQHNDRDSSELRD--QVSIHPSSSSFIITMLLG 69
H CC +I R KK + + RDS+ R Q S+H F + + LG
Sbjct: 251 HFQCCGFIFSSSTRLKTKK*SLVAEMSGRDSTSSRSRLQHSLHYQIFLFGVCLFLG 84
>TC15796 similar to UP|Q948T1 (Q948T1) Two-pore calcium channel, partial
(42%)
Length = 1524
Score = 25.4 bits (54), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 13 SGNHRPCC 20
SGNHRPCC
Sbjct: 618 SGNHRPCC 641
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.128 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,326,973
Number of Sequences: 28460
Number of extensions: 49640
Number of successful extensions: 387
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of query: 150
length of database: 4,897,600
effective HSP length: 82
effective length of query: 68
effective length of database: 2,563,880
effective search space: 174343840
effective search space used: 174343840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0035.10