BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0034b.4
(217 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV423488 185 6e-48
TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%) 35 0.010
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 34 0.022
TC18995 weakly similar to UP|Q8PB28 (Q8PB28) Serine protease, pa... 33 0.049
TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 prote... 33 0.049
TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase largest c... 32 0.064
TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE... 32 0.11
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 32 0.11
TC12360 similar to UP|O22196 (O22196) At2g40820 protein, partial... 32 0.11
TC15040 similar to UP|K22E_HUMAN (P35908) Keratin, type II cytos... 31 0.19
AV417887 30 0.24
TC14278 homologue to UP|O65760 (O65760) Extensin (Fragment), par... 30 0.32
BI420938 30 0.32
TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protei... 30 0.32
AV409066 30 0.32
BP044040 30 0.42
TC18915 29 0.54
TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 29 0.54
AV406598 29 0.71
TC15658 29 0.71
>AV423488
Length = 487
Score = 185 bits (469), Expect = 6e-48
Identities = 88/113 (77%), Positives = 95/113 (83%), Gaps = 4/113 (3%)
Frame = +3
Query: 109 SSGYMPMVRANFPSVDGPEFPEFSTQVNLGDGSADNEVN----EVTPKSKKTHAPAWNTA 164
SSGYM MV NF SVD PEFPEFSTQ+ LG +A N+ + TPKSKKTH+PAW+TA
Sbjct: 117 SSGYMAMVNENFSSVDAPEFPEFSTQMTLGGMTAANQFTPNQEDTTPKSKKTHSPAWSTA 296
Query: 165 QNMVLISGWINCGTSSVVGKNQKGETFWRDIAEYCNEHCSFDPPRDGIACRNR 217
QN+VLIS WIN GTSSVVGKNQKGETFWRDIAEYCNEHCSFDPPRDGIACRNR
Sbjct: 297 QNLVLISRWINRGTSSVVGKNQKGETFWRDIAEYCNEHCSFDPPRDGIACRNR 455
>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
Length = 425
Score = 35.0 bits (79), Expect = 0.010
Identities = 27/101 (26%), Positives = 41/101 (39%), Gaps = 9/101 (8%)
Frame = +2
Query: 19 SNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRP----QNPNYFQVPHQFSNQHPQNP 74
SN NP +F + + +N ++ H +N+R Q+PNY P + +
Sbjct: 2 SNSNPLASSSTMEFPFNQGRNNSHATHTHHHNNRRDDDEEQHPNYPPPPGSTGSPYSSFN 181
Query: 75 NYYPDPNQ----YSNQSSFVPNFHPSYGSV-RYPSQTPQSS 110
N YP P Q Y P P YG R P P+++
Sbjct: 182 NPYPPPQQQPPFYGEPHRPPPQQPPFYGEPHRPPPSQPETN 304
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 33.9 bits (76), Expect = 0.022
Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Frame = +2
Query: 3 PNNHHYNTQNSSSYPISNQN---PNNYED------PNQFSYPRSQNPTNYQVPHQFSNQR 53
P+N N++ P SNQ PNN P P NP Y +Q
Sbjct: 788 PSNQGGFPPNNAGGPPSNQGGFPPNNAGGYPASPRPGNMPGPPPSNPGGYPPNNQAGGYH 967
Query: 54 PQNPNYFQVPHQFSNQHPQNPNY--YPDPNQY-----SNQSSFVPNFHPSYGSVRYPSQT 106
PQN P+ + +P N YP +Q +NQ + PN + Y +T
Sbjct: 968 PQNQAGGYPPNSQAGGYPPNSQAGGYPPNSQAGVYPPNNQGVYPPNQN------NYAGRT 1129
Query: 107 PQSSGYMPMVRANFPSVDGP 126
P + G P A P+ P
Sbjct: 1130PPNVGGAPPNSAYGPNAGYP 1189
>TC18995 weakly similar to UP|Q8PB28 (Q8PB28) Serine protease, partial (4%)
Length = 473
Score = 32.7 bits (73), Expect = 0.049
Identities = 30/108 (27%), Positives = 44/108 (39%)
Frame = +1
Query: 7 HYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQF 66
H+ NS+ Y SN NP + + S N N+ + RP++ + P
Sbjct: 118 HFREMNSN-YGRSNSNPQKTASSSPYV---SLNNFNFDFDLGIGSNRPKSLIDQKTPTSN 285
Query: 67 SNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMP 114
SN NP+Y YSN +S + PS+ P+QT G P
Sbjct: 286 SNS---NPSY-----SYSNPNSSTQSKKPSWTHQPVPAQTAALPGQPP 405
>TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 protein, partial
(12%)
Length = 431
Score = 32.7 bits (73), Expect = 0.049
Identities = 26/87 (29%), Positives = 35/87 (39%)
Frame = +3
Query: 2 DPNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQ 61
+PN N + PI QNPN +PN P P P N+ P P Q
Sbjct: 159 NPNPTPIPAPNPNPNPIQIQNPNPIHNPNPRPTPTPPQPR----PPPTFNRAP--PPQQQ 320
Query: 62 VPHQFSNQHPQNPNYYPDPNQYSNQSS 88
P FS+ P+ P P+ S+ +S
Sbjct: 321 QPSHFSHFSSLPPSSAPSPSPASSFNS 401
>TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase largest chain
(isoform B1) - soybean (fragment) {Glycine
max;} , partial (22%)
Length = 848
Score = 32.3 bits (72), Expect = 0.064
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Frame = +1
Query: 3 PNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQV 62
P + YN Q++ P +P++ + S +PT+ + P +P+Y
Sbjct: 97 PTSPSYNPQSAKYSPSLAYSPSS----PRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPS 264
Query: 63 PHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYG-SVRYPSQTPQS-SGYMP 114
+S P N PD YS S P F PS G S P +P S S Y P
Sbjct: 265 SPTYSPSSPYNSGVSPD---YSPSS---PQFSPSTGYSPSQPGYSPSSTSQYTP 408
Score = 27.7 bits (60), Expect = 1.6
Identities = 21/58 (36%), Positives = 25/58 (42%)
Frame = +1
Query: 57 PNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMP 114
P+Y +S P +P Y P YS S PSY S PS PQS+ Y P
Sbjct: 1 PSYSPTSPAYS---PTSPGYSPTSPSYSPTS-------PSY-SPTSPSYNPQSAKYSP 141
>TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE11_17
{Arabidopsis thaliana;}, partial (24%)
Length = 585
Score = 31.6 bits (70), Expect = 0.11
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Frame = -1
Query: 2 DPNNHHYNTQNSSSYPI-SNQNPN-----------NYEDPNQFS--YPRSQNPTNYQVPH 47
DP+ H Y+T SSS+P S+Q+P+ ++ P S YP S P + P
Sbjct: 270 DPH*HTYSTAPSSSFPAPSSQSPSHPATARAPQTPSHSPPASPSSPYPSSSPPQPHPPPP 91
Query: 48 QFSNQRPQNPNYFQVPHQFSNQHPQNP 74
+ PQ Q P +FS HP +P
Sbjct: 90 PLESPSPQPTP--QPPPRFS--HPSSP 22
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 31.6 bits (70), Expect = 0.11
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Frame = +1
Query: 29 PNQFSYPRSQNPTNYQVPH-QFSNQRPQN-PNYFQVPH---------------QFSNQHP 71
P+ +P+ Q + Q H Q S +PQ+ P + Q P QF NQH
Sbjct: 82 PHFQPHPQPQLQSQPQPQHIQQSQPQPQSQPQHIQQPQPQPQLQHIQQSQPQPQFQNQHF 261
Query: 72 QNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVRANFPSVDGPEFPEF 131
Q P YP P + PN+ S S ++ Y VR + + G P
Sbjct: 262 QYPGTYPPPPWAATPG--YPNYQNHLSSTNALSTPQANTPYTSAVRGDPVASSGQSNPPN 435
Query: 132 ST 133
+T
Sbjct: 436 AT 441
>TC12360 similar to UP|O22196 (O22196) At2g40820 protein, partial (11%)
Length = 1030
Score = 31.6 bits (70), Expect = 0.11
Identities = 22/101 (21%), Positives = 38/101 (36%), Gaps = 16/101 (15%)
Frame = +3
Query: 33 SYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQNPNYY--------------P 78
+YP P ++ P + + + P +SN + P+Y P
Sbjct: 561 AYPHQMAPASFHGPEKQAQINTPYSHPVPFPANYSNPYVGGPSYPAAAGPSYQPPRTHPP 740
Query: 79 DPNQYSNQSSFVPNFHPSYGSV--RYPSQTPQSSGYMPMVR 117
P + + ++P+FHPS + Y + SSG P R
Sbjct: 741 PPPPPPSNTGYIPSFHPSNDGLGPSYFNMASSSSGAAPRQR 863
>TC15040 similar to UP|K22E_HUMAN (P35908) Keratin, type II cytoskeletal 2
epidermal (Cytokeratin 2e) (K2e) (CK 2e), partial (3%)
Length = 573
Score = 30.8 bits (68), Expect = 0.19
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Frame = +3
Query: 25 NYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQH-----PQNPNYYPD 79
N + P+Q P + Y P S Q+P++ +++ H P + + YP
Sbjct: 126 NPQSPSQSYAPSAPELPAYSSPPPHSAAYTQSPSHAPPHSSYNSSHGYGQAPPSSSGYPP 305
Query: 80 PNQYSNQSSFVPNFHP 95
+ SSF P HP
Sbjct: 306 SSSGGGYSSFPPGTHP 353
>AV417887
Length = 421
Score = 30.4 bits (67), Expect = 0.24
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = -1
Query: 34 YPRSQNPTNYQVP-------HQFSNQRPQNPNYFQVPHQFSNQHPQNP 74
Y + Q P YQ+ HQ+ N N FQV HQ+ N QNP
Sbjct: 415 YEKEQAPLRYQLDLWV*EEQHQYDN------NLFQVHHQYLNNPLQNP 290
>TC14278 homologue to UP|O65760 (O65760) Extensin (Fragment), partial
(28%)
Length = 619
Score = 30.0 bits (66), Expect = 0.32
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 40 PTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQN 73
P + +PH F+N P PN ++PHQF+ P +
Sbjct: 57 PPLHPLPHIFTNHLPHQPN--RLPHQFTFMLPHH 152
>BI420938
Length = 594
Score = 30.0 bits (66), Expect = 0.32
Identities = 31/128 (24%), Positives = 42/128 (32%)
Frame = +1
Query: 2 DPNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQ 61
D ++ + Q S P+ + + N DP + QN Y
Sbjct: 148 DLTDNEDDEQEQSESPVQSSSANGISDPGIGT---------------------QNIQY-A 261
Query: 62 VPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVRANFP 121
P Q HP P YP P+ Y +S F P Y + YP PQ G PM
Sbjct: 262 TPGQLGTGHPMVPPVYPYPDPYC-RSIFAP-----YETQPYP---PQPYGGQPMAHLQLM 414
Query: 122 SVDGPEFP 129
+ P
Sbjct: 415 GIQQAGVP 438
>TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protein) (IK
factor) (Cytokine IK), partial (6%)
Length = 492
Score = 30.0 bits (66), Expect = 0.32
Identities = 19/62 (30%), Positives = 31/62 (49%), Gaps = 12/62 (19%)
Frame = +3
Query: 8 YNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPH------------QFSNQRPQ 55
++ NSS+Y + + ++E PN+ R +NPT +VPH SN+RP+
Sbjct: 96 FSLVNSSNY*LVHSKIKHHETPNR*---RGRNPTQAKVPH*S*ARGIGPKTPSGSNRRPE 266
Query: 56 NP 57
P
Sbjct: 267 AP 272
>AV409066
Length = 340
Score = 30.0 bits (66), Expect = 0.32
Identities = 23/75 (30%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = -3
Query: 38 QNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQNPNY-YPDPNQYSNQSSFVPNFHPS 96
Q+ + Q S+Q N + +Q SN PQ P++ +P QSS+ P+ HPS
Sbjct: 209 QSLASSQSTQAASSQHSSNASCYQ-----SNPSPQTPHHGFP-------QSSYSPHPHPS 66
Query: 97 YGSVRYPSQTPQSSG 111
Y PQ G
Sbjct: 65 YTYSAASQSPPQPQG 21
>BP044040
Length = 491
Score = 29.6 bits (65), Expect = 0.42
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +3
Query: 9 NTQNSSSYPIS-NQNPNNY----EDPNQFSYPRSQNPTNYQVPHQFSNQRP 54
++ +SSS PI+ N+NP ++PN S PR + TN++ Q +N+ P
Sbjct: 162 SSSSSSSAPINPNRNPTPRLTPTQNPNPNSKPRPASTTNHEPSPQKTNRNP 314
>TC18915
Length = 472
Score = 29.3 bits (64), Expect = 0.54
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 76 YYPDPNQYSNQSS--FVPNFHPSYGSVRYPSQT 106
+YP N+ N+S +PNFHP + + Y S T
Sbjct: 236 WYPSGNRSRNRSVNLLIPNFHPDFYHLNYLSMT 138
>TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (15%)
Length = 761
Score = 29.3 bits (64), Expect = 0.54
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -3
Query: 18 ISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVP---HQFSNQHPQNP 74
IS ++P P YP N + PH S+ + N+ Q P H+F ++ P +
Sbjct: 333 ISQKHP-----PLTTHYPPQHTHQNSRTPHHGSHLPLLSQNFHQTPATHHRFRHRFPPSH 169
Query: 75 NYYPDPNQYSNQ 86
+ P P+ S++
Sbjct: 168 RHAPAPSPPSSR 133
>AV406598
Length = 425
Score = 28.9 bits (63), Expect = 0.71
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = -1
Query: 56 NPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHP 95
+P+Y Q+ HQ HP N +P +Q+ S +F P
Sbjct: 362 HPSYHQLLHQLQLLHPNGSNSHPPLHQHGPTSHHFLHFLP 243
>TC15658
Length = 872
Score = 28.9 bits (63), Expect = 0.71
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 3 PNNHHYNTQNSSSYPISNQNPN 24
P HHYNT S P SN++ N
Sbjct: 776 PTKHHYNTSKSELMPCSNKHLN 711
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.129 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,340,488
Number of Sequences: 28460
Number of extensions: 96001
Number of successful extensions: 617
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of query: 217
length of database: 4,897,600
effective HSP length: 87
effective length of query: 130
effective length of database: 2,421,580
effective search space: 314805400
effective search space used: 314805400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0034b.4