BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.8
(1310 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP075943 282 2e-76
AV780009 236 2e-62
AV410378 162 2e-40
AU088980 143 2e-34
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 122 3e-28
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 122 4e-28
AV424544 108 4e-24
BP043850 91 2e-18
BP066094 84 3e-18
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 81 9e-16
BP084332 69 4e-12
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 67 1e-11
AV411594 56 7e-10
BP057233 59 5e-09
AV766665 57 1e-08
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 57 2e-08
AV427921 52 8e-07
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro... 37 6e-06
AV769869 46 3e-05
BP084259 43 4e-04
>BP075943
Length = 547
Score = 282 bits (722), Expect = 2e-76
Identities = 149/170 (87%), Positives = 152/170 (88%), Gaps = 1/170 (0%)
Frame = -3
Query: 978 ASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGI 1037
ASSGSFTALLLY DDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGI
Sbjct: 545 ASSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGI 366
Query: 1038 VLNQRKYALQLISDSGHLASKP-VSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNT 1096
VLNQRKYALQLISDSGH +P + NSQ LGTN GTPLTDIGSYRR+VGRLLYLNT
Sbjct: 365 VLNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNT 186
Query: 1097 TRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSST 1146
TRPDITFAVNQLSQFLSAPTDIHEQ LKYL GSPGSGLFYPASSST
Sbjct: 185 TRPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSST 36
>AV780009
Length = 529
Score = 236 bits (602), Expect = 2e-62
Identities = 116/180 (64%), Positives = 137/180 (75%)
Frame = -1
Query: 1121 QAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISW 1180
QAA RVL+Y+KG+P GLF+ A S L A+SDSDWAGC DTR+S+TGY +FLG SLISW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 1181 RSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHN 1240
R+KKQ+T SRSS E+EYRA+A TVCE+QWL YL Q L P +F DNQSA+HIAHN
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 1241 PSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMK 1300
P++HERTKHIELDCH+VR KLQ GL+HLLPIST Q AD+FTK P P C LG +
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK---PCP-HLCFPLLGAR 2
>AV410378
Length = 358
Score = 162 bits (411), Expect = 2e-40
Identities = 75/112 (66%), Positives = 90/112 (79%)
Frame = +1
Query: 723 VNNQNQVIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNP 782
++N + R S R+R+PPSYLQDYHCTL +S +V SS GI+YPLSKV+SY L P
Sbjct: 19 LSNPEEGNVQRISNRVRRPPSYLQDYHCTLAASTTVSKVPSSAGISYPLSKVISYHKLTP 198
Query: 783 KYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPD 834
Y++F+MNI++ EPTR+SEAVKHECWRKAMDQEIEALERN TWILVDKPPD
Sbjct: 199 SYRAFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPPD 354
>AU088980
Length = 360
Score = 143 bits (361), Expect = 2e-34
Identities = 62/115 (53%), Positives = 86/115 (73%)
Frame = +2
Query: 557 NAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQILYNT 616
N+IVERKH+H+++V RAL+F ++LP W++AV HA YLIN LP+P+L +CP+Q L N
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 617 VPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVI 671
P + +LK+FGTLC+ STLT + +K DPRA KC+FLGFK T G++ DL + I
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDLPTTXI 346
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 122 bits (307), Expect = 3e-28
Identities = 57/106 (53%), Positives = 77/106 (71%)
Frame = +1
Query: 1205 CEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQG 1264
CE+ WL Y+LQDL P ++P+ ++ D+QSA HIA N +HERTKH+++DCH+VREKLQ
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1265 LVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLPV*GGL 1310
L HLLPIS+ QTAD+ TK L PF +SKLG+ +I+ GG+
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNIYSSACGGV 318
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 122 bits (306), Expect = 4e-28
Identities = 58/102 (56%), Positives = 75/102 (72%)
Frame = +1
Query: 1208 QWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVH 1267
QWL YLLQDL P P ++ DN SA HIA NP +HERTKHIE+DCHIVRE++Q+GL+H
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIH 180
Query: 1268 LLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLPV*GG 1309
LLPIS++ AD++TK+L+P F +KLG+ +I P GG
Sbjct: 181 LLPISSSEPLADIYTKALSPQNFHQICAKLGLINICSPACGG 306
>AV424544
Length = 276
Score = 108 bits (271), Expect = 4e-24
Identities = 54/89 (60%), Positives = 68/89 (75%)
Frame = +3
Query: 956 LSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFR 1015
LS+ L LGY QS DH+L+ K SFT +L+Y DD++LAGND++EIQ VK+ L QFR
Sbjct: 9 LSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQFR 188
Query: 1016 IKDLGEAKYFLGLEIARSTSGIVLNQRKY 1044
IKDLG KYFLGLE+ARS+ G+ L+QRKY
Sbjct: 189 IKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BP043850
Length = 515
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/105 (45%), Positives = 65/105 (61%)
Frame = -1
Query: 1206 EIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGL 1265
EI WL LL +L Q PT + DN SA+ IA NP YHE T+HIE+DCH VRE + +
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1266 VHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLPV*GGL 1310
+ L +ST++Q AD+ TKSLT +SKL + + +*GG+
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVESPASI*GGM 198
>BP066094
Length = 532
Score = 84.3 bits (207), Expect(2) = 3e-18
Identities = 44/149 (29%), Positives = 81/149 (53%), Gaps = 1/149 (0%)
Frame = +2
Query: 882 AKMTTLRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNK-ANQVCLLQK 940
+K +R++++ + LHQ++V +AFL+ + E++Y+ P G K ++ + L+K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 941 SLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDM 1000
SLYGLKQA R W+ LS+ L + + D TL+ K + +Y DD++ +
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1001 HEIQLVKSSLHDQFRIKDLGEAKYFLGLE 1029
+ + +F ++ +GE KYFLG++
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 25.8 bits (55), Expect(2) = 3e-18
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 866 YTQVEGVDFQDTFSPVAK 883
Y+Q G+D+ +TF+PVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 81.3 bits (199), Expect = 9e-16
Identities = 38/82 (46%), Positives = 57/82 (69%)
Frame = +3
Query: 1205 CEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQG 1264
CE WL Y L DL L ++ DN+SA+H+A N +H+RT++IE+DCHIV K+ G
Sbjct: 18 CEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFG 197
Query: 1265 LVHLLPISTTLQTADVFTKSLT 1286
++HLL + ++ Q ADVFTK+++
Sbjct: 198 ILHLLHVPSSDQVADVFTKTIS 263
>BP084332
Length = 368
Score = 69.3 bits (168), Expect = 4e-12
Identities = 38/113 (33%), Positives = 64/113 (56%)
Frame = +2
Query: 1185 QSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYH 1244
QST + S+ E+EY + A ++ W+ + L+D Q + ++ DN +A+ ++ NP H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDY-QILESNIPIYCDNTAAISLSKNPILH 208
Query: 1245 ERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKL 1297
R KHIE+ H +R+ +Q+G++ L + T Q AD+FTK L F + L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 67.4 bits (163), Expect = 1e-11
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Frame = +2
Query: 960 LKKLGYKQSNADHTLYIKA-SSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKD 1018
+ LGY + ++DH Y K F LLLY DD+L+ G + +Q +K+ L +F +KD
Sbjct: 14 IMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKD 193
Query: 1019 LGEAKYFLGLEIARSTSG--IVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNI 1074
LG A LG++I R I L+Q+ Y +++ P+STP+ + KL +++
Sbjct: 194 LGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
>AV411594
Length = 244
Score = 56.2 bits (134), Expect(2) = 7e-10
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +2
Query: 1025 FLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSY 1084
FL IA+S GI+L++RKYALQL+ D+ ++ KP P+D S KL + G L+D+ Y
Sbjct: 50 FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLY 229
Query: 1085 RRLVG 1089
R +G
Sbjct: 230 IRFIG 244
Score = 25.4 bits (54), Expect(2) = 7e-10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 1010 LHDQFRIKDLGEAKYFLGLE 1029
L F++K L + KYFLGLE
Sbjct: 6 LAKSFKLKVLDDMKYFLGLE 65
>BP057233
Length = 473
Score = 58.9 bits (141), Expect = 5e-09
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = -2
Query: 1230 DNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAP 1289
DN SA +A NP H R+KHIE+D H +R+++ Q V + + TT Q AD TK L+
Sbjct: 436 DNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKPLSHTR 257
Query: 1290 FKTCISKLGMKDIHLP 1305
F KLG+ IH P
Sbjct: 256 FSQLRDKLGV--IHSP 215
>AV766665
Length = 601
Score = 57.4 bits (137), Expect = 1e-08
Identities = 28/75 (37%), Positives = 45/75 (59%)
Frame = +3
Query: 1125 RVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKK 1184
R+ YLK + G + +++ F+ +D+ G I R S GY +FL +L++WRSK+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 1185 QSTASRSSCESEYRA 1199
Q+ +RSS E+E RA
Sbjct: 552 QNIIARSSGEAELRA 596
Score = 28.1 bits (61), Expect = 9.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 986 LLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEI 1030
L +Y D + + G+D E Q+++ L QF DL + KY +E+
Sbjct: 115 LCVYVDHMTIVGDDEVEKQILREKLAPQF---DLKKLKYISVIEV 240
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 56.6 bits (135), Expect = 2e-08
Identities = 47/143 (32%), Positives = 65/143 (44%), Gaps = 1/143 (0%)
Frame = -1
Query: 1041 QRKYALQLISDSGHLASKPVSTPMDNSQ-KLGTNIGTPLTDIGSYRRLVGRLLYLNTTRP 1099
Q+ Y ++ SK +ST + + + G G D Y+ L+G + YLNT R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 1100 DITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGC 1159
DI V S+F+ P D H Q A R L+Y+KG+ G+F +T + D
Sbjct: 559 DIVCGVGLRSRFME-P*DCH*QGAQRSLRYIKGTLKDGIF-----MLVITM*NSLDTQ-- 404
Query: 1160 IDTRKSITGYCLFLGDSLISWRS 1182
I TR GY LG ISW S
Sbjct: 403 IVTR---PGYAFHLGRGAISWSS 344
>AV427921
Length = 284
Score = 51.6 bits (122), Expect = 8e-07
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = +1
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN + ERK++ ++++ R+LL + LP +F AV +++++NR PT V+ N P +
Sbjct: 25 PQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEAW 204
Query: 614 YNTVPDITNLKIFGTLCF 631
P + + +I L +
Sbjct: 205 SGRQPAVDHFRISRCLAY 258
>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 517
Score = 37.0 bits (84), Expect(2) = 6e-06
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -1
Query: 1173 LGDSLISWRSKKQSTASRSSCESEYRAMAT 1202
L D+LISW+SK+ +RS E+E+R MAT
Sbjct: 517 LSDNLISWKSKETIIVARSRAEAEFRVMAT 428
Score = 31.2 bits (69), Expect(2) = 6e-06
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = -2
Query: 1209 WLHYLLQDLNQPQ---LAPTSMFR---DNQSAMHIAHNPSYHERTKHIELDCHIVREKLQ 1262
WL L Q P+ L S+ DN++A+H+ + R KHIE+D H + ++
Sbjct: 435 WLQPLXQSSLLPKPRDLVDVSLITHT*DNKAALHMP-KI*FSMRAKHIEIDFHFL*DRRL 259
Query: 1263 QGLVHLLPISTTLQTADVFTKS 1284
+ +++ Q DVFTKS
Sbjct: 258 YLDISTRFVNSNDQLTDVFTKS 193
>AV769869
Length = 289
Score = 46.2 bits (108), Expect = 3e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -3
Query: 1274 TLQTADVFTKSLTPAPFKTCISKLGMKDIHLPV*GGL 1310
+LQ AD+ TK LT PF++ KLGM +IH PV*GGL
Sbjct: 287 SLQLADILTKPLTLGPFRSLFFKLGMHNIHSPV*GGL 177
>BP084259
Length = 385
Score = 42.7 bits (99), Expect = 4e-04
Identities = 19/58 (32%), Positives = 30/58 (50%)
Frame = -3
Query: 1198 RAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCH 1255
R + +T E WL LL++L +F +N +A ++ N +H KH+ LDCH
Sbjct: 179 RTIGSTAAEFLWLQQLLKELQFSLPKVPCIFSNNINATYVCLNLVFHSHMKHVALDCH 6
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.339 0.148 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,062,545
Number of Sequences: 28460
Number of extensions: 401625
Number of successful extensions: 3264
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 3189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3253
length of query: 1310
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1209
effective length of database: 2,023,140
effective search space: 2445976260
effective search space used: 2445976260
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0033b.8