BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0032.7
(496 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19034 39 0.003
TC8309 UP|O22306 (O22306) Nlj21, complete 34 0.063
TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 33 0.082
TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 31 0.53
TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 31 0.53
TC9077 30 0.69
TC15858 30 0.69
TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, ... 30 0.69
TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall prot... 28 2.6
BP066698 28 2.6
TC10618 weakly similar to GB|AAP49518.1|31376383|BT008756 At3g62... 28 2.6
BP048490 28 3.4
TC14120 similar to UP|Q9P1T7 (Q9P1T7) HIC protein isoform p40, p... 28 3.4
TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 28 3.4
TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 28 3.4
TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 28 3.4
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 28 4.5
TC17275 28 4.5
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 28 4.5
TC8425 UP|Q7X850 (Q7X850) Zinc finger transcription factor OsZFP... 28 4.5
>TC19034
Length = 843
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +1
Query: 25 DEEEIND--EDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVT 82
D+E++ E+ P SP PG + S + G + PEV+P PP K
Sbjct: 250 DQEDLKTGTENPPEVSPNPPSPGKDDSKKDTDQEDLKTGTENPPEVSPNPPSPGKD---- 417
Query: 83 YKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKKKYSGKRIP 142
S++ T Q+ +KT +E P + D++ D D+ K+ SGK P
Sbjct: 418 -DSKKDT-----DQEDLKTGTENPPEVSPNPPSPGKDDSKKDT-DLPEESDKQVSGKSTP 576
Query: 143 QNV 145
+ +
Sbjct: 577 RTM 585
Score = 38.1 bits (87), Expect = 0.003
Identities = 36/145 (24%), Positives = 57/145 (38%), Gaps = 33/145 (22%)
Frame = +1
Query: 24 TDEEEIND--EDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPK------- 74
TD+E++ E+ P SP PG + S + G + PEV+P PP
Sbjct: 340 TDQEDLKTGTENPPEVSPNPPSPGKDDSKKDTDQEDLKTGTENPPEVSPNPPSPGKDDSK 519
Query: 75 -------------RSKSCPVTYKSRQATV-----------KGKGKQKVVKTPSEKKKRKV 110
KS P T K++ V K G QK+ + K K+
Sbjct: 520 KDTDLPEESDKQVSGKSTPRTMKAKLKIVKKSLAAKLKAKKNNGLQKIRQKTINKNKK-- 693
Query: 111 PVDVEDSESDAEADVQDIRPSEKKK 135
+V+++ES +AD + I + +K
Sbjct: 694 --EVDNAESSHDADKKHIPDNNSQK 762
>TC8309 UP|O22306 (O22306) Nlj21, complete
Length = 1063
Score = 33.9 bits (76), Expect = 0.063
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Frame = +3
Query: 23 VTDEEEINDE-DSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPV 81
VTDE ++ ++ D K E + ++E + +P +V PE P +
Sbjct: 441 VTDEPKVEEKTDGEAKK--------EATETKETKESADPVEVQAPEAGEEPETVTLKEDA 596
Query: 82 TYKSRQATVKGKGKQKVVKT--PSEKKKRKVPVDVEDS-ESDAEADVQDIRPSEK 133
+ K + + + K++VV T P EKK+ + +D E S E E +V + P+EK
Sbjct: 597 S-KEEEKVAEPEAKEEVVNTEAPDEKKEEE-KLDTEGSDEKKEEEEVIKVAPAEK 755
>TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (96%)
Length = 764
Score = 33.5 bits (75), Expect = 0.082
Identities = 35/147 (23%), Positives = 64/147 (42%), Gaps = 4/147 (2%)
Frame = +3
Query: 72 PPKRSKSCPVTY---KSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDI 128
P RS S P Y S+ K+ K P+E+KK V +
Sbjct: 15 PNSRSNSKP*IYFLPNSQFVMAPKADKKPAEKKPAEEKKSTV--------------AEKA 152
Query: 129 RPSEKKKYSGKRIPQNVPVVPIDRVSFHLEESVQKWK-FVCKIRMAKVREVGPDVLECKD 187
P+EKK +GK++P+ D+ ++SV+ +K ++ K+ +++V P D
Sbjct: 153 PPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVETYKIYIFKV----LKQVHP------D 302
Query: 188 VIVLIEKAGLMKTIQNVGRCYEKLVRE 214
+ + + G+M + + +EKL +E
Sbjct: 303 IGISSKAMGIMNSF--INDIFEKLAQE 377
>TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (90%)
Length = 701
Score = 30.8 bits (68), Expect = 0.53
Identities = 28/119 (23%), Positives = 55/119 (45%), Gaps = 1/119 (0%)
Frame = +2
Query: 97 KVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKKKYSGKRIPQNVPVVPIDRVSFH 156
K K P+E+KK V + P+EKK +GK++P+ D+
Sbjct: 89 KADKKPAEEKKSTV--------------AEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKR 226
Query: 157 LEESVQKWK-FVCKIRMAKVREVGPDVLECKDVIVLIEKAGLMKTIQNVGRCYEKLVRE 214
++SV+ +K ++ K+ +++V P D+ + + G+M + + +EKL +E
Sbjct: 227 SKKSVETYKIYIFKV----LKQVHP------DIGISSKAMGIMNSF--INDIFEKLAQE 367
>TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (93%)
Length = 682
Score = 30.8 bits (68), Expect = 0.53
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +1
Query: 100 KTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKKKYSGKRIPQNVPVVPIDRVSFHLEE 159
K +EKK E+ +S A + P+EKK +GK++P+ D+ ++
Sbjct: 67 KAAAEKKPAAEKKPAEEKKSTA---AEKAPPAEKKPKAGKKLPKEGASAAGDKKKKRSKK 237
Query: 160 SVQKWK-FVCKIRMAKVREVGPDVLECKDVIVLIEKAGLMKTIQNVGRCYEKLVRE 214
+V+ +K ++ K+ +++V P D+ + + G+M + + +EKL +E
Sbjct: 238 NVETYKIYIFKV----LKQVHP------DIGISSKAMGIMNSF--INDIFEKLAQE 369
>TC9077
Length = 745
Score = 30.4 bits (67), Expect = 0.69
Identities = 17/82 (20%), Positives = 35/82 (41%), Gaps = 11/82 (13%)
Frame = +2
Query: 14 PTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISD-----------QENPGK 62
P VPHC + + S ++ PP ++P + + +Q + + PG+
Sbjct: 200 PFRVPHCRQPRSQNPRRVQASTLRRPPFLLPLLLQNQAQALPSTIRSRPLHPYRNQPPGR 379
Query: 63 VSTPEVTPTPPKRSKSCPVTYK 84
+P PP++++S +K
Sbjct: 380 AGSPHRRLVPPQQARSRQARWK 445
>TC15858
Length = 994
Score = 30.4 bits (67), Expect = 0.69
Identities = 31/130 (23%), Positives = 53/130 (39%), Gaps = 29/130 (22%)
Frame = +2
Query: 59 NPGKVSTPEVTPTPPKRSKSCPV-TYKSRQATVKGKGKQKVVK----------------- 100
+P + S PE PPK CP+ + ++AT K ++ +
Sbjct: 248 SPPESSKPETQNEPPKTQTPCPLPVLEFKEATTTRKFSKEAPRLSLDSRAIVDARGSFHP 427
Query: 101 TPSEKKKRKVPV-----DVEDSESDAEADVQDIRPSEKKKYSGKRIPQNVPVVP------ 149
EK++R V +EDS+SD++ P ++ S RIP+ V+P
Sbjct: 428 REVEKQRRSTSVVAKLMGLEDSDSDSD-------PELRRSASESRIPKEDLVLPKPQYRF 586
Query: 150 IDRVSFHLEE 159
D +F L++
Sbjct: 587 FDTTNFQLKQ 616
>TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, partial
(8%)
Length = 410
Score = 30.4 bits (67), Expect = 0.69
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -3
Query: 35 PVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKG 94
P PP P T++ +S E PG +ST E++P +SK ++++A+ K G
Sbjct: 294 PPPPPPPPPPPPSTTL---LSLSETPGPLST*EMSPASRSKSKDKKACKEAQKASAKPTG 124
Query: 95 KQKVV 99
V
Sbjct: 123 SGNAV 109
>TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (66%)
Length = 1158
Score = 28.5 bits (62), Expect = 2.6
Identities = 15/47 (31%), Positives = 20/47 (41%)
Frame = +1
Query: 35 PVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPV 81
P+ +PP P V T S P P V P+PP +CP+
Sbjct: 415 PIVTPPTPTPPVVTPPSPPTETPCPP----PPPVVPSPPPAQPTCPI 543
>BP066698
Length = 442
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -1
Query: 18 PHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEIS 55
PH +DV + + N+ DS PP V P + +E S
Sbjct: 118 PHLQDVPETVKANEADSSSHIPPPVAPPAAMNEQRESS 5
>TC10618 weakly similar to GB|AAP49518.1|31376383|BT008756 At3g62130
{Arabidopsis thaliana;}, partial (16%)
Length = 497
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 40 PDVVPGVETSVSQEISDQENPGKVSTPEVTPTP 72
P +VPG+ S+SQ + N + PEV P P
Sbjct: 165 PSLVPGIPLSISQSLIVNGNFNSMIDPEVRP*P 67
>BP048490
Length = 452
Score = 28.1 bits (61), Expect = 3.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 24 TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPE 67
+D+E+ +D DS VK V+ S S E SD+E+ TP+
Sbjct: 129 SDDEDSSDSDSEVKKDK---MDVDESDSSEDSDEEDEKSTKTPQ 251
>TC14120 similar to UP|Q9P1T7 (Q9P1T7) HIC protein isoform p40, partial (7%)
Length = 588
Score = 28.1 bits (61), Expect = 3.4
Identities = 20/89 (22%), Positives = 37/89 (41%)
Frame = -3
Query: 30 NDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTYKSRQAT 89
NDE V ETS + E D G+ PE + P S C T R+ +
Sbjct: 328 NDERGATNGARSVSGEEETSSNDENKDLHRQGRSRPPEKSLEDPNGS-PCSCTSHDRRIS 152
Query: 90 VKGKGKQKVVKTPSEKKKRKVPVDVEDSE 118
+G + + + ++++ +P +E ++
Sbjct: 151 KRGWRRGRAERKRKGRRRKGLPPRMEAAQ 65
>TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(44%)
Length = 1500
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 456 RRRTTRR*ARSCCYCCSGW 474
RRR RR* CC CC W
Sbjct: 305 RRRNRRR*RLCCCCCCYCW 249
>TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(21%)
Length = 556
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 456 RRRTTRR*ARSCCYCCSGW 474
RRR RR* CC CC W
Sbjct: 296 RRRNRRR*RLCCCCCCYCW 240
>TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(40%)
Length = 601
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 456 RRRTTRR*ARSCCYCCSGW 474
RRR RR* CC CC W
Sbjct: 303 RRRNRRR*RLCCCCCCYCW 247
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 27.7 bits (60), Expect = 4.5
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 29 INDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTYKSRQA 88
+N K P + + S + PGK P P P K + PV ++A
Sbjct: 785 VNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPPPPKPAPKK--AATPV----KKA 946
Query: 89 TVKGKGKQKVVKTPSEK 105
K GK K VK+P+++
Sbjct: 947 PAK-SGKAKTVKSPAKR 994
>TC17275
Length = 796
Score = 27.7 bits (60), Expect = 4.5
Identities = 18/71 (25%), Positives = 30/71 (41%)
Frame = +3
Query: 33 DSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTYKSRQATVKG 92
+ P +SPP P + + S I+ P P TP P + S P+ +SR T
Sbjct: 213 NQPNQSPPIFPPKTKPNPSNPITTTSPPKTKPKPPSTPPPSR--NSIPLPSRSRS*TTPH 386
Query: 93 KGKQKVVKTPS 103
+ + + P+
Sbjct: 387 QNPSLIPQKPA 419
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 454 AARRRTTRR*ARSCCYCCSGWEQ*RG 479
A R RR R C CCSGW RG
Sbjct: 363 ARDREGPRRRTRICEICCSGWRVHRG 286
>TC8425 UP|Q7X850 (Q7X850) Zinc finger transcription factor OsZFP34 (C2H2
type zinc finger transcription factor ZFP31), partial
(8%)
Length = 417
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 454 AARRRTTRR*ARSCCYCCSGWEQ*RG 479
A R RR R C CCSGW RG
Sbjct: 124 ARDREGPRRRTRICEICCSGWRVHRG 201
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.142 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,892,221
Number of Sequences: 28460
Number of extensions: 127815
Number of successful extensions: 1596
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of query: 496
length of database: 4,897,600
effective HSP length: 94
effective length of query: 402
effective length of database: 2,222,360
effective search space: 893388720
effective search space used: 893388720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0032.7