TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0032.10
         (216 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP036240                                                               62  1e-10
TC13560                                                                60  4e-10
BP056414                                                               55  7e-09
AV408509                                                               30  0.25
BP052637                                                               30  0.32
TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (...    28  1.6
TC11036 similar to UP|COQ4_ARATH (Q9ZPR0) Ubiquinone biosynthesi...    27  2.1
TC19596                                                                27  2.7
BP052329                                                               27  3.6
BP043306                                                               26  6.1
TC10005 weakly similar to UP|O49409 (O49409) Protein kinase - li...    25  7.9

>BP036240 
          Length = 567

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 27/62 (43%), Positives = 40/62 (63%)
 Frame = -3

Query: 70  GVLRDAMGQWIKGFSINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVIR 129
           GVLRD+   WIKGF  NMG   Y N FL + + + +AVEI + +++  VI+  D+L+ I 
Sbjct: 484 GVLRDSRRHWIKGFCRNMGDLTYHNVFLVELSAIQSAVEIALSMDLQHVIVESDALEAIH 305

Query: 130 LI 131
           L+
Sbjct: 304 LL 299


>TC13560 
          Length = 571

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 28/59 (47%), Positives = 40/59 (67%)
 Frame = +2

Query: 70  GVLRDAMGQWIKGFSINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVI 128
           GVLR+A G W+KGF  N G+ + AN FL +   V TAVE  + L++ +VI+  DSL+V+
Sbjct: 224 GVLRNADGSWLKGFRWNFGTFSSANVFLTELMAVKTAVEAAMSLDLARVIVESDSLEVV 400


>BP056414 
          Length = 606

 Score = 55.5 bits (132), Expect = 7e-09
 Identities = 26/62 (41%), Positives = 38/62 (60%)
 Frame = -3

Query: 70  GVLRDAMGQWIKGFSINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVIR 129
           GV+RDA G W KGF+ ++G   +   F  +   V TAV+ ++  +IPQVII  DS  V+ 
Sbjct: 484 GVVRDAAGSWSKGFARSLGVLRWHXAFFVELMAVQTAVDFIMSWDIPQVIIESDSQQVVE 305

Query: 130 LI 131
           L+
Sbjct: 304 LL 299


>AV408509 
          Length = 428

 Score = 30.4 bits (67), Expect = 0.25
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 159 RTWKVRPSRTWKNLQIPTPYSSRFTIRSG--AVWKIGQFF 196
           R+W    SRTWKN+        RF I +    VW + + F
Sbjct: 209 RSWHTSESRTWKNVSFTRQVCCRFIIEASHCVVWVLTRIF 90


>BP052637 
          Length = 473

 Score = 30.0 bits (66), Expect = 0.32
 Identities = 14/44 (31%), Positives = 27/44 (60%)
 Frame = -2

Query: 70  GVLRDAMGQWIKGFSINMGSRAYANYFLAQFTTVSTAVEIVIGL 113
           GVLRD + +W+ GF++  G+    + F+A+   +  +++ V GL
Sbjct: 367 GVLRDKVXRWVSGFAMAFGT---GDAFMAKLQALHESLQHVWGL 245


>TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
          Length = 749

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = +2

Query: 161 WKVRPSRTWKNLQIPTPYS 179
           W +RPS TW    +PTP S
Sbjct: 131 WSLRPSSTWWRTIVPTPES 187


>TC11036 similar to UP|COQ4_ARATH (Q9ZPR0) Ubiquinone biosynthesis protein
           COQ4 homolog, partial (93%)
          Length = 992

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
 Frame = -1

Query: 131 IIDPVKFVKSEKALYEKNFART---------VKVRPKRTWK---VRPSRTWKNLQIPT 176
           IID ++ ++S   LY+K    T         +  + K+T++   +R SR+W NLQ  T
Sbjct: 956 IIDKIQPIQSSLTLYQKQNLCTKSY*KISLLLSKKHKKTYQDMQLRNSRSWNNLQFST 783


>TC19596 
          Length = 499

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 16/67 (23%), Positives = 32/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 66  MRVVGVLRDAMGQWIKGF-SINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDS 124
           M + G++RDA G WI GF + ++G  A      A+   +   + ++    + +     D 
Sbjct: 46  MGMGGIVRDAHGAWISGFYAGSLGGDA----LRAEIAALKHGLTLLWNAHVRRATCEVDC 213

Query: 125 LDVIRLI 131
           LD++  +
Sbjct: 214 LDIVEAL 234


>BP052329 
          Length = 441

 Score = 26.6 bits (57), Expect = 3.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 113 LEIPQVIIVCDSLDVIRLIIDP 134
           L++P+VII  DSL+V+ L+  P
Sbjct: 367 LDLPKVIIESDSLEVVSLLHSP 302


>BP043306 
          Length = 500

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 101 TTVSTAVEIVIGLEIPQVIIVCDSLDVIRLIIDPVKFVKSEKALY 145
           T  S    + +GLE   +I V + L   +L  D +KF+    A Y
Sbjct: 361 TPHSLYAAVSVGLETETIIAVLNKLSKTKLPKDMIKFIHDSTANY 495


>TC10005 weakly similar to UP|O49409 (O49409) Protein kinase - like protein
           (Protein kinase-like protein), partial (17%)
          Length = 657

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 158 KRTWKVRPSRTWKNLQ 173
           KR WKVRP + ++NL+
Sbjct: 189 KRRWKVRPLKCFQNLE 236


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,379,349
Number of Sequences: 28460
Number of extensions: 40048
Number of successful extensions: 200
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of query: 216
length of database: 4,897,600
effective HSP length: 86
effective length of query: 130
effective length of database: 2,450,040
effective search space: 318505200
effective search space used: 318505200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)