TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0031.3
         (547 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...   168  2e-42
BP046665                                                              161  3e-40
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...   139  4e-40
BP085968                                                               89  5e-35
BP065488                                                               87  7e-18
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    84  4e-17
AU089042                                                               58  3e-09
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    57  1e-08
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     35  0.024
BP063650                                                               34  0.070
TC12181 similar to AAQ89616 (AAQ89616) At3g01370, partial (14%)        34  0.070
TC15539                                                                30  0.77
TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like p...    28  5.0
TC9515 similar to UP|O49081 (O49081) Clp-like energy-dependent p...    27  6.5

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score =  168 bits (425), Expect = 2e-42
 Identities = 82/134 (61%), Positives = 103/134 (76%)
 Frame = +1

Query: 414 IDQAAGLCNGTRMIVNALTKYIIVVTVLNENKMGETTFIPRMSLTPSNSDIPFKFQRRQF 473
           I +   LCNGTR+IV  L  Y+I  TV+    +G+  FIPR+ + PS+S  PFKF+RR F
Sbjct: 43  IQKFENLCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 222

Query: 474 SVTLCFVMTINKSQGQSLSHVGLYLPRPVFTHGQPYVALYRVKSRKMLKMLIIDDE*VVS 533
            ++LCF MTINKSQGQSLSHV LYL RPVFTHGQ YVAL RV+SRK LK+L++D+E  V+
Sbjct: 223 PISLCFAMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVT 402

Query: 534 NTTRNVVYQEVLDN 547
           NTT+NVVY+EV +N
Sbjct: 403 NTTKNVVYREVFEN 444


>BP046665 
          Length = 524

 Score =  161 bits (407), Expect = 3e-40
 Identities = 81/134 (60%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
 Frame = -1

Query: 389 DFKCSEIPNHAIKLKAGVPIMLIRNIDQAAGLCNGTRMIVNALTKYIIVVTVLNENKMGE 448
           D  C  IPNH I LK G PIML+RNI QA G CNGTR+IV  L   +I  TV+    +G+
Sbjct: 524 DITCFGIPNHKITLKEGAPIMLLRNIYQAVGFCNGTRLIVADLGTNVIKATVIT*TNIGD 345

Query: 449 TTFIPRMSLTPSNSDIPFKFQRRQFSVTLCFVMTINKSQGQSLSHVGLYLPRPVFTHGQP 508
             FIPRM + PS+S  PFKF+RRQF ++LC  MTINKSQGQSLSHVGLYL R VFTHGQ 
Sbjct: 344 DIFIPRMDMVPSDSGYPFKFERRQFPISLCSAMTINKSQGQSLSHVGLYLSRHVFTHGQL 165

Query: 509 YVALY-RVKSRKML 521
           YVAL+ ++K R  +
Sbjct: 164 YVALHAKIKKRTQI 123



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/45 (42%), Positives = 31/45 (68%)
 Frame = -2

Query: 497 YLPRPVFTHGQPYVALYRVKSRKMLKMLIIDDE*VVSNTTRNVVY 541
           Y+   +++H      L  ++SRK LK+L++D+E  V+NTT+NVVY
Sbjct: 202 YIFLAMYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score =  139 bits (351), Expect(3) = 4e-40
 Identities = 68/112 (60%), Positives = 88/112 (77%)
 Frame = +2

Query: 436 IVVTVLNENKMGETTFIPRMSLTPSNSDIPFKFQRRQFSVTLCFVMTINKSQGQSLSHVG 495
           I VTV+    +G+   IPRM + PS+S  PFKF+RRQ  ++LCF MTINKSQG+SLSHVG
Sbjct: 137 IQVTVITGTHIGDDISIPRMDMVPSDSSYPFKFERRQSPISLCFAMTINKSQGRSLSHVG 316

Query: 496 LYLPRPVFTHGQPYVALYRVKSRKMLKMLIIDDE*VVSNTTRNVVYQEVLDN 547
           LYL RPV THG  YVAL RV+SRK LK+L++D+E  ++NTT+NVVY+E+ +N
Sbjct: 317 LYLSRPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFEN 472



 Score = 41.2 bits (95), Expect(3) = 4e-40
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 403 KAGVPIMLIRNIDQAAGLCNGTRMIV 428
           K G  IML+RNI QA+GLCNGTR+IV
Sbjct: 43  KEGALIMLLRNIVQASGLCNGTRLIV 120



 Score = 21.6 bits (44), Expect(3) = 4e-40
 Identities = 8/12 (66%), Positives = 9/12 (74%)
 Frame = +3

Query: 392 CSEIPNHAIKLK 403
           CS+IPNH I  K
Sbjct: 9   CSDIPNHKITEK 44


>BP085968 
          Length = 341

 Score = 89.0 bits (219), Expect(2) = 5e-35
 Identities = 43/70 (61%), Positives = 54/70 (76%)
 Frame = +2

Query: 66  SLTSEQEIFYKNVLDDVLSDNS*FFFLYGFGGTGKTFVWNILYAALRSRGLIVLNVASSG 125
           S T++Q   YK ++  V SD+  F+FLYGFGG+GKTFVWN   + LRS+GL+VLNVASSG
Sbjct: 5   SWTAKQSKVYKQIMSSVWSDDGGFYFLYGFGGSGKTFVWNTWSSGLRSQGLMVLNVASSG 184

Query: 126 IASLLLPGDR 135
           IAS LLPG +
Sbjct: 185 IASWLLPGGK 214



 Score = 76.3 bits (186), Expect(2) = 5e-35
 Identities = 36/44 (81%), Positives = 41/44 (92%)
 Frame = +3

Query: 134 DRTAHSRFSIPISINEISTCNLRQGSPKAELLKKASLIIWDEAP 177
           +RTAHSRFSI ISIN+ISTCN++QGS KAELL+KAS IIWDEAP
Sbjct: 210 ERTAHSRFSIHISINDISTCNIKQGSQKAELLQKASSIIWDEAP 341


>BP065488 
          Length = 439

 Score = 87.0 bits (214), Expect = 7e-18
 Identities = 51/107 (47%), Positives = 67/107 (61%), Gaps = 2/107 (1%)
 Frame = -1

Query: 443 ENKMGETTFIPRMSLTPSNSDIPFKFQRRQFSVTLCFVMTINKSQGQ-SLSHVGLYLPRP 501
           E   G+  FIPRM++ PS S  P KF+R QF ++LCF MTINKSQ       V L     
Sbjct: 391 EPTXGDDIFIPRMNMVPSVSGDPLKFERCQFPISLCFAMTINKSQXSVHYPTVALISFLA 212

Query: 502 VFTH-GQPYVALYRVKSRKMLKMLIIDDE*VVSNTTRNVVYQEVLDN 547
            ++H  + YVAL  V+SRK LK+L++ +E  V+N T+N VYQEV  N
Sbjct: 211 CYSHMDKLYVALSGVRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKN 71


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 84.3 bits (207), Expect = 4e-17
 Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
 Frame = +1

Query: 414 IDQAAGLCNGTRMIVNALTKYIIVVTVLNENKMGETTFIPRMSLTPSNSDIPFKFQRRQF 473
           I +   LC+GTR+IV  L  Y+I  TV+    +G+  FIPR+ + PS+S  PFKF+RR F
Sbjct: 151 IQKFENLCHGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 330

Query: 474 SVTLCFVMTINKSQGQSLSHVGLY-----------LPRPVFTHGQPYVALYRV 515
            ++LCF MTINKSQG        Y           LPR  FT  + Y+ +Y +
Sbjct: 331 PISLCFAMTINKSQG*DQEKDSNY*CWMRKKK*PTLPRT*FT--EKYLKIYEI 483



 Score = 47.4 bits (111), Expect = 6e-06
 Identities = 21/34 (61%), Positives = 30/34 (87%)
 Frame = +3

Query: 514 RVKSRKMLKMLIIDDE*VVSNTTRNVVYQEVLDN 547
           RV+SRK LK+L++D+E  V+NTT+NVVY+EV +N
Sbjct: 372 RVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFEN 473


>AU089042 
          Length = 191

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 27/60 (45%), Positives = 40/60 (66%)
 Frame = +3

Query: 402 LKAGVPIMLIRNIDQAAGLCNGTRMIVNALTKYIIVVTVLNENKMGETTFIPRMSLTPSN 461
           LK GVP+ML+ N+  + GLCNGTR+IV+ L   +I  T+L+   +G   +I  M+L PS+
Sbjct: 9   LKXGVPVMLMXNLXISTGLCNGTRLIVDYLGPNVIGATILSGTHIGXVVYISMMNLXPSD 188


>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
           isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 31/37 (82%)
 Frame = +2

Query: 339 PTLESLEEINNFMLAMIPGDETEYLSCDTPCKSDEDS 375
           PTLES+E++N FML ++PG+ TEYLS DT CK DED+
Sbjct: 458 PTLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDT 568


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 35.4 bits (80), Expect = 0.024
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +2

Query: 509 YVALYRVKSRKMLKMLIIDDE*VVSNTTRNVVYQEV 544
           YVA+ RVKS+  LK+LI  D       T+N+VY+EV
Sbjct: 5   YVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEV 112


>BP063650 
          Length = 497

 Score = 33.9 bits (76), Expect = 0.070
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 216 DDFGQILPVISKGSRSEIVGSAINSSYLWKHCKVM 250
           +  G+ L V+ KG   +I+ + +N+SYL  HC+V+
Sbjct: 46  ETLGKFLTVVYKGRMQDIIHAIVNASYL*DHCQVL 150


>TC12181 similar to AAQ89616 (AAQ89616) At3g01370, partial (14%)
          Length = 682

 Score = 33.9 bits (76), Expect = 0.070
 Identities = 21/76 (27%), Positives = 36/76 (46%), Gaps = 7/76 (9%)
 Frame = +2

Query: 205 IPFGGKVVVLGDDFGQIL----PVISK---GSRSEIVGSAINSSYLWKHCKVMKLTVNMS 257
           +P+G K  +  D+   +     P+ S    G   ++ G A     LW+ C+++K+ V   
Sbjct: 224 LPYGVKPKLTDDEMTTLRRLSRPIPSHFALGRNKKLQGLAAAIIKLWERCEIVKIAVKRG 403

Query: 258 LQNATSTSSATEIKEF 273
           +QN  S   A EIK +
Sbjct: 404 VQNTNSEIMAEEIKVY 451


>TC15539 
          Length = 722

 Score = 30.4 bits (67), Expect = 0.77
 Identities = 14/29 (48%), Positives = 16/29 (54%)
 Frame = -3

Query: 138 HSRFSIPISINEISTCNLRQGSPKAELLK 166
           HSR  IPI    IS C L   +P+  LLK
Sbjct: 303 HSRIPIPIFFRHISMCELHNCNPRFRLLK 217


>TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like protein
            (AT5g16880/F2K13_30), partial (77%)
          Length = 1574

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 211  VVVLGDDFGQILPVISKGS--RSEIVGSAINSSYLWKHCKVMKLTVNMSLQNATSTSSAT 268
            +V  GD  G     I  GS  R  +VG    SSYL +   +  LT   S  +A+ +   +
Sbjct: 1126 LVCRGDSSGSTATGIIAGSG*RGAVVGF-FTSSYLSRTF*ISSLTFKASKSSASLSPEVS 950

Query: 269  EIKEFVDW 276
             I+  VDW
Sbjct: 949  TIRWTVDW 926


>TC9515 similar to UP|O49081 (O49081) Clp-like energy-dependent protease
           (ATP-dependent Clp protease proteolytic subunit)
           (Endopeptidase Clp) , partial (74%)
          Length = 1158

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 466 FKFQRRQFSVTLCFVMTINKSQGQSLSHVGLYLPRPVFTH 505
           +K+        LCF  TINK++ QSL +    +P  V  H
Sbjct: 867 YKYHANNLGSILCFQYTINKTKLQSLRNRKKTVPLCVLLH 748


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,702,137
Number of Sequences: 28460
Number of extensions: 110943
Number of successful extensions: 474
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of query: 547
length of database: 4,897,600
effective HSP length: 95
effective length of query: 452
effective length of database: 2,193,900
effective search space: 991642800
effective search space used: 991642800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)