TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0031.15
         (168 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15044 similar to UP|Q8VYI3 (Q8VYI3) At1g76150/T23E18_38, parti...    37  0.001
TC16104 homologue to GB|AAP37819.1|30725594|BT008460 At5g03290 {...    27  1.8
CN824962                                                               26  4.0
TC17177 homologue to UP|GAPN_PEA (P81406) NADP-dependent glycera...    25  5.3
AV781146                                                               25  5.3
AV423258                                                               25  9.0
BP063610                                                               25  9.0

>TC15044 similar to UP|Q8VYI3 (Q8VYI3) At1g76150/T23E18_38, partial (53%)
          Length = 1015

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
 Frame = +3

Query: 50  KVTHDLNPLHTDSAAAQNVGFEGPLVHGMLVASLFPH-IISSHFPGAVYVSQSL--NFKF 106
           +++ D NPLH+D   A+  GF  P++HG+         II +   G   + +S+   F  
Sbjct: 177 RLSGDYNPLHSDPMIAKVAGFSQPILHGLCTLGFAVRAIIKNICKGDPDMIKSIAGRFLL 356

Query: 107 PVYIGDQVIGEVQATNLRANKNRYLVKFKTRCIKS 141
            VY G+ ++ E+    LR    R +VK + R + S
Sbjct: 357 HVYPGETLVTEMWLEGLRV-IYRTMVKERKRTVLS 458


>TC16104 homologue to GB|AAP37819.1|30725594|BT008460 At5g03290
          {Arabidopsis thaliana;}, partial (41%)
          Length = 559

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 2  LIRSLVSSKLQSLSLRCFSSAATP--QVLKPGD 32
          L+R  + S+  + SLR FSSA+TP    L PGD
Sbjct: 50 LLRRTLGSRYLANSLRGFSSASTPIRATLFPGD 148


>CN824962 
          Length = 673

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 83  LFPHIISSHFPGAVYVSQSLNFKFPVYIGDQVIGEVQATNLRANK 127
           L PH+ S H P A Y  Q LN +       Q +G   + NLR ++
Sbjct: 331 LSPHL-SDHLPQAPYSHQDLNHEIYSAPSSQHLG*RDSENLRTDQ 200


>TC17177 homologue to UP|GAPN_PEA (P81406) NADP-dependent
           glyceraldehyde-3-phosphate dehydrogenase
           (Non-phosphorylating glyceraldehyde 3-phosphate
           dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase
           [NADP+]) (Triosephosphate dehydrogenase) , partial (40%)
          Length = 689

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 74  LVHGMLVASLFPHIISSHFPGAVYVSQS 101
           LV G+++ +LFP +   H P A Y++ S
Sbjct: 192 LVVGLMMETLFPEVDFFHSPSA*YLNTS 109


>AV781146 
          Length = 540

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 20/74 (27%), Positives = 27/74 (36%)
 Frame = +3

Query: 30  PGDVLRKARAFTEEDVLHYSKVTHDLNPLHTDSAAAQNVGFEGPLVHGMLVASLFPHIIS 89
           P D LRK        +LH          LH    + QN    G  VH ++  +    I  
Sbjct: 75  PTDSLRKTVKSKPTHILHLQAYPFPNESLHISIISLQNTLIHGKRVHKLVP*A*NIRIRK 254

Query: 90  SHFPGAVYVSQSLN 103
             FP A  V + +N
Sbjct: 255 IAFPFASLVGRRIN 296


>AV423258 
          Length = 431

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (54%)
 Frame = -2

Query: 44  DVLHYSKVTHDLNPLHTDSAAAQNVGF 70
           D L++SKV    +PL       +NVGF
Sbjct: 211 DALNHSKVRKGFDPLEITMKRDENVGF 131


>BP063610 
          Length = 461

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 1/36 (2%)
 Frame = +3

Query: 59  HTDSAAAQNVGFEGPLVH-GMLVASLFPHIISSHFP 93
           H D++     G     +H G +VASL P I+S H P
Sbjct: 174 HEDTSRLLKAGSLSTSLHSG*MVASLTPLILSGHVP 281


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,601,648
Number of Sequences: 28460
Number of extensions: 31352
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of query: 168
length of database: 4,897,600
effective HSP length: 84
effective length of query: 84
effective length of database: 2,506,960
effective search space: 210584640
effective search space used: 210584640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)