BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0031.13
(927 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14210 similar to PIR|A84668|A84668 Argonaute (AGO1)-like prote... 820 0.0
TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO... 738 0.0
TC16141 weakly similar to GB|AAC77862.2|20197419|AC005623 Argona... 260 6e-70
AV407626 228 3e-60
TC13170 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), par... 192 3e-49
AV421492 160 1e-39
TC18984 homologue to UP|AGO1_ARATH (O04379) Argonaute protein, p... 107 2e-39
TC14409 similar to PIR|A84668|A84668 Argonaute (AGO1)-like prote... 152 2e-37
TC15276 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), par... 151 4e-37
BP056483 134 7e-32
TC14224 similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like protein... 127 6e-30
TC14347 homologue to GB|AAF79718.1|8778710|AC020889 T1N15.2 {Ara... 116 2e-26
BP056314 87 1e-18
BP052529 79 3e-15
TC9356 weakly similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like p... 71 9e-13
BP056566 59 3e-09
TC19329 similar to PIR|T52134|T52134 Zwille protein [imported] -... 48 8e-06
TC9440 similar to UP|Q8LNZ9 (Q8LNZ9) AGO1 homologous protein, pa... 38 0.006
AV771168 34 0.092
CN825698 33 0.16
>TC14210 similar to PIR|A84668|A84668 Argonaute (AGO1)-like protein
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (40%)
Length = 1525
Score = 820 bits (2118), Expect = 0.0
Identities = 405/405 (100%), Positives = 405/405 (100%)
Frame = +2
Query: 523 GLVRDLIKCARLKGIPIDEPYEEIFEENGQFRRAPPLVRVEKMFERIQKELPGAPSFLLC 582
GLVRDLIKCARLKGIPIDEPYEEIFEENGQFRRAPPLVRVEKMFERIQKELPGAPSFLLC
Sbjct: 17 GLVRDLIKCARLKGIPIDEPYEEIFEENGQFRRAPPLVRVEKMFERIQKELPGAPSFLLC 196
Query: 583 LLPERKNSDLYGPWKKKNLAEYGIVTQCISPTRVNDQYLTNVLMKINAKLGGLNSVLGVE 642
LLPERKNSDLYGPWKKKNLAEYGIVTQCISPTRVNDQYLTNVLMKINAKLGGLNSVLGVE
Sbjct: 197 LLPERKNSDLYGPWKKKNLAEYGIVTQCISPTRVNDQYLTNVLMKINAKLGGLNSVLGVE 376
Query: 643 MNPSIPIVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVE 702
MNPSIPIVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVE
Sbjct: 377 MNPSIPIVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVE 556
Query: 703 MIDNLFKQVSEKEDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNIELNQI 762
MIDNLFKQVSEKEDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNIELNQI
Sbjct: 557 MIDNLFKQVSEKEDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNIELNQI 736
Query: 763 IEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNNDFYMCAH 822
IEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNNDFYMCAH
Sbjct: 737 IEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNNDFYMCAH 916
Query: 823 AGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQI 882
AGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQI
Sbjct: 917 AGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQI 1096
Query: 883 GQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSSSMFFC 927
GQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSSSMFFC
Sbjct: 1097GQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSSSMFFC 1231
>TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO1)-like
protein {Arabidopsis thaliana;} , partial (32%)
Length = 1142
Score = 738 bits (1904), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Frame = +3
Query: 1 MDPNEHENGNGNGNGNEDLMPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIAR 60
MDPNEHENGNGNGNGNEDLMPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIAR
Sbjct: 54 MDPNEHENGNGNGNGNEDLMPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIAR 233
Query: 61 KGLGSKGTKLPLLTNHFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETY 120
KGLGSKGTKLPLLTNHFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETY
Sbjct: 234 KGLGSKGTKLPLLTNHFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETY 413
Query: 121 GSELNGKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKKR 180
GSELNGKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKKR
Sbjct: 414 GSELNGKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKKR 593
Query: 181 MRRPYHSKTFKVEISFAAKIPLQAIVNALRGQESENYQEAIRVLDIILRQHAAKQGCLLV 240
MRRPYHSKTFKVEISFAAKIPLQAIVNALRGQESENYQEAIRVLDIILRQHAAKQGCLLV
Sbjct: 594 MRRPYHSKTFKVEISFAAKIPLQAIVNALRGQESENYQEAIRVLDIILRQHAAKQGCLLV 773
Query: 241 RQSFFHNDPKNYADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIAN 300
RQSFFHNDPKNYADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIAN
Sbjct: 774 RQSFFHNDPKNYADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIAN 953
Query: 301 QNVRDPFSLDWAKAKRTLKNLRIKASPSNQEYKITGLSELPCKEQTFTMKKKGGNNGEED 360
QNVRDPFSLDWAKAKRTLKNLRIKASPSNQEYKITGLSELPCKEQTFTMKKKGGNNGEED
Sbjct: 954 QNVRDPFSLDWAKAKRTLKNLRIKASPSNQEYKITGLSELPCKEQTFTMKKKGGNNGEED 1133
Query: 361 ATE 363
ATE
Sbjct: 1134ATE 1142
>TC16141 weakly similar to GB|AAC77862.2|20197419|AC005623 Argonaute
(AGO1)-like protein {Arabidopsis thaliana;} , partial
(14%)
Length = 598
Score = 260 bits (665), Expect = 6e-70
Identities = 125/175 (71%), Positives = 146/175 (83%), Gaps = 5/175 (2%)
Frame = +3
Query: 12 NGNGNEDLMPPPPPPPIVPADVEPVKVDLL---DLPPEPVKKKLPTRLPIARKGLGSKGT 68
+GNG E+ +P PPPPP++P+DV P+K + + PPEPVKKK P RLPIAR+GLG+KGT
Sbjct: 72 DGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIARRGLGTKGT 251
Query: 69 KLPLLTNHFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELNGKD 128
K+PLLTNHFKVT N+DGHFF YSV +YEDGRPVEGKGVGRK++DKVQETY S+LNGKD
Sbjct: 252 KIPLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQSDLNGKD 431
Query: 129 FAYDGEKTLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDG--ASTNDSDKKRM 181
FAYDGEK+LFTIGSL RNKLE+ VVLEDV SNRNNGNCSP N++DKKRM
Sbjct: 432 FAYDGEKSLFTIGSLPRNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKKRM 596
>AV407626
Length = 426
Score = 228 bits (581), Expect = 3e-60
Identities = 113/146 (77%), Positives = 128/146 (87%)
Frame = +3
Query: 336 GLSELPCKEQTFTMKKKGGNNGEEDATEEEITVYEYFVNYRKIDLRYSADLPCINVGKPK 395
G SELPCKEQTF+++KKG +G++ EE+ VY+YFVN RKI+LRYS DLPCINVGKPK
Sbjct: 3 GFSELPCKEQTFSLRKKG--DGDDS---EEVAVYDYFVNTRKIELRYSGDLPCINVGKPK 167
Query: 396 RPTYVPVELCSLVSLQRYTKALTTLQRSSLVEKSRQKPLERMNVLNQALKTSNYGNEPML 455
RPT+ P+ELC LVSLQRYTKALTTLQRSSLVEKSRQKP ERMNVL ALK SNYG EP+L
Sbjct: 168 RPTFFPIELCELVSLQRYTKALTTLQRSSLVEKSRQKPQERMNVLTDALKISNYGAEPLL 347
Query: 456 KNCGITIASGFTQVEGRVLQAPRLKF 481
KNCGI+I++GFTQVEGRVL APRLKF
Sbjct: 348 KNCGISISNGFTQVEGRVLPAPRLKF 425
>TC13170 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), partial (14%)
Length = 588
Score = 192 bits (487), Expect = 3e-49
Identities = 94/126 (74%), Positives = 108/126 (85%)
Frame = +1
Query: 802 GTVIDNKICHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQR 861
GTVIDN ICHP+++DFYMCAHAG IGTSRPTHYHVL D+IGF+ D+LQELVHSLSYVY R
Sbjct: 1 GTVIDNHICHPKHHDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYPR 180
Query: 862 STTAISVVAPICYAHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVS 921
STTAISVVAPICYA LAA Q+G FMKF++ +TSSS G LT+AG P VPQLP+L +V+
Sbjct: 181 STTAISVVAPICYAPLAAAQMGPFMKFDEFCETSSSPGSLTSAGPIP-VPQLPRLH*AVA 357
Query: 922 SSMFFC 927
SMFFC
Sbjct: 358 HSMFFC 375
>AV421492
Length = 255
Score = 160 bits (404), Expect = 1e-39
Identities = 79/84 (94%), Positives = 82/84 (97%)
Frame = +2
Query: 658 LGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDNLFKQVSEKEDE 717
LGMDVSHGSPGQ+DIPSIAAVVSSREWPLISKYRACVRTQS KVEMIDNLFKQVSEKEDE
Sbjct: 2 LGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRACVRTQSAKVEMIDNLFKQVSEKEDE 181
Query: 718 GIIRELLIDFYSSSGKRKPDNIII 741
GI+RELL+DFY SSGKRKPDNIII
Sbjct: 182 GIMRELLLDFYLSSGKRKPDNIII 253
>TC18984 homologue to UP|AGO1_ARATH (O04379) Argonaute protein, partial
(22%)
Length = 698
Score = 107 bits (266), Expect(2) = 2e-39
Identities = 59/143 (41%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Frame = +1
Query: 580 LLCLLPERKNSDLYGPWKKKNLAEYGIVTQCISPTRV---NDQYLTNVLMKINAKLGGLN 636
L+ +LP+ N LYG K+ + G+V+QC V + QYL NV +KIN K+GG N
Sbjct: 10 LIVILPDN-NGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRN 186
Query: 637 SVLGVEMNPSIPIVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRT 696
+VL ++ IP++S PTII G DV+H PG+ PSIAAVV+S+++P I+KY V
Sbjct: 187 TVLVDALSRRIPLISDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCA 366
Query: 697 QSPKVEMIDNLFKQVSEKEDEGI 719
Q+ + E+I +LF ++ I
Sbjct: 367 QAHRQELIQDLFXTMARSSQRNI 435
Score = 73.6 bits (179), Expect(2) = 2e-39
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +2
Query: 718 GIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNIELNQIIEACKFLDETWNPKF 777
G+I+ELLI F ++G+ KP II +RDGVSE QF QVL EL+ I +AC L+ + P
Sbjct: 443 GMIKELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPV 619
Query: 778 LVIVAQKNHHTKFF 791
+V QK HHT+ F
Sbjct: 620 TFVVVQKRHHTRLF 661
>TC14409 similar to PIR|A84668|A84668 Argonaute (AGO1)-like protein
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (9%)
Length = 674
Score = 152 bits (384), Expect = 2e-37
Identities = 76/85 (89%), Positives = 81/85 (94%)
Frame = +2
Query: 842 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQIGQFMKFEDKSDTSSSHGGL 901
GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQ+GQFMKFEDKS+TSSSHGGL
Sbjct: 5 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGL 184
Query: 902 TAAGVAPVVPQLPKLQDSVSSSMFF 926
+AAG P VPQLPKLQD+V +SMFF
Sbjct: 185 SAAGAVP-VPQLPKLQDNVCNSMFF 256
>TC15276 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), partial (11%)
Length = 695
Score = 151 bits (382), Expect = 4e-37
Identities = 75/120 (62%), Positives = 93/120 (77%)
Frame = +2
Query: 808 KICHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTTAIS 867
KI HPRN DFY+CAHAGMIGTSRP HY+VLLD+IGFSPD LQ L+HSLSY QRS+ A S
Sbjct: 2 KIVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATS 181
Query: 868 VVAPICYAHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSSSMFFC 927
+VAPI YAH AA Q+ Q + F++ S+TSS+ L + GV +P+LP+L +V S+MFFC
Sbjct: 182 IVAPIHYAHHAAAQMRQVLNFDNLSETSSN---LDSEGVVS-IPELPRLHSNVKSTMFFC 349
>BP056483
Length = 333
Score = 134 bits (337), Expect = 7e-32
Identities = 67/82 (81%), Positives = 67/82 (81%)
Frame = +1
Query: 4 NEHENGNGNGNGNEDLMPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIARKGL 63
NEHENGNGNGNGNEDLMPP PIVPADVEPV VDLL PEPVKKKL I RKGL
Sbjct: 88 NEHENGNGNGNGNEDLMPPXXXXPIVPADVEPVNVDLLXXTPEPVKKKLTNLASIGRKGL 267
Query: 64 GSKGTKLPLLTNHFKVTVANSD 85
GSKGTKL LLTNHFKVTVANSD
Sbjct: 268 GSKGTKLALLTNHFKVTVANSD 333
>TC14224 similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like protein At2g27880,
partial (13%)
Length = 753
Score = 127 bits (320), Expect = 6e-30
Identities = 62/130 (47%), Positives = 86/130 (65%)
Frame = +1
Query: 798 NVPPGTVIDNKICHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSY 857
N+ PGTV+D ICHPR DFY+ +HAG+ GTSRPTHYHVL D+ F+ DELQ L ++L Y
Sbjct: 79 NIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCY 258
Query: 858 VYQRSTTAISVVAPICYAHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQ 917
Y R T ++S+V P YAHLAA + ++ E +S+ S+ G A + V +LP ++
Sbjct: 259 TYARCTRSVSIVPPAYYAHLAAFRARSYI--EGESEMGSASAGAGGATRSNVEIKLPAIK 432
Query: 918 DSVSSSMFFC 927
D+V MF+C
Sbjct: 433 DNVKDVMFYC 462
>TC14347 homologue to GB|AAF79718.1|8778710|AC020889 T1N15.2 {Arabidopsis
thaliana;} , partial (12%)
Length = 663
Score = 116 bits (290), Expect = 2e-26
Identities = 60/134 (44%), Positives = 81/134 (59%), Gaps = 9/134 (6%)
Frame = +2
Query: 803 TVIDNKICHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRS 862
+++D+KICHP DFY+C+HAG+ GTSRP HYHVL D+ F+ D LQ L H+L Y Y R
Sbjct: 44 SLVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTHNLCYTYARC 223
Query: 863 TTAISVVAPICYAHLAATQIGQFMKFEDKSDTSSSH-------GGLT--AAGVAPVVPQL 913
T ++S+V P YAHLAA + +M+ E S + GG T A G V L
Sbjct: 224 TRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSAAAGRGMGGRTTRAPGANAAVRPL 403
Query: 914 PKLQDSVSSSMFFC 927
P L+++V MF+C
Sbjct: 404 PALKENVKRVMFYC 445
>BP056314
Length = 398
Score = 86.7 bits (213), Expect(2) = 1e-18
Identities = 43/51 (84%), Positives = 45/51 (87%)
Frame = -3
Query: 867 SVVAPICYAHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQ 917
SVVAPICYAHLAAT IG FMKFE +SDTSS+ GGLTAAGVAPVVP LPK Q
Sbjct: 396 SVVAPICYAHLAATPIGPFMKFEAQSDTSSTPGGLTAAGVAPVVPPLPKFQ 244
Score = 23.9 bits (50), Expect(2) = 1e-18
Identities = 9/11 (81%), Positives = 11/11 (99%)
Frame = -1
Query: 917 QDSVSSSMFFC 927
+DSV+SSMFFC
Sbjct: 245 RDSVTSSMFFC 213
>BP052529
Length = 394
Score = 79.3 bits (194), Expect = 3e-15
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Frame = +3
Query: 18 DLMPPP--PPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIARKGLGSKGTKLPLLTN 75
D PPP P P V +E V+ D P+K + I+R+G+G+ G ++P+LTN
Sbjct: 117 DAEPPPLSPSSPDVSPSIETVEAD-------PIKFSI-----ISRQGVGTAGKRIPVLTN 260
Query: 76 HFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQET 119
FKV+V D FFQYSV + ED R +E KG+GRK+ID V +T
Sbjct: 261 LFKVSVNAPDAIFFQYSVTICMEDKRVIESKGIGRKLIDSVYQT 392
>TC9356 weakly similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like protein
At2g27880, partial (10%)
Length = 697
Score = 70.9 bits (172), Expect = 9e-13
Identities = 55/167 (32%), Positives = 78/167 (45%), Gaps = 2/167 (1%)
Frame = +3
Query: 21 PPPPPPPIVPADVEPVKVDL-LDLPPEPVKKKLPTRLPIARKGLGSKGTKLPLLTNHFKV 79
P PPPP VP D +V+ L L P R P R G G G K+ + NHF++
Sbjct: 243 PSPPPPSPVPVDALSSEVEQKLALRPAAPSSTKAIRFP-DRPGFGRLGKKIQVRANHFQL 419
Query: 80 TVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELNGKDF-AYDGEKTLF 138
VA D H Y VA++ E + K V R+V+ ++ + Y + G +DG K LF
Sbjct: 420 QVAERDLH--HYDVAITPE----ITSKKVTREVVSQLIKMYKESVLGNRLPVFDGRKNLF 581
Query: 139 TIGSLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKKRMRRPY 185
T G L + EF V LED P +S++ S K++ R +
Sbjct: 582 TAGPLPFSSKEFVVKLED---------DRPKASSSSGSKKEKRERQF 695
>BP056566
Length = 467
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/36 (80%), Positives = 31/36 (85%)
Frame = -1
Query: 892 SDTSSSHGGLTAAGVAPVVPQLPKLQDSVSSSMFFC 927
SDTSS+ GGLTAAGVAPVVP LPKL DSV+ SM FC
Sbjct: 467 SDTSSNPGGLTAAGVAPVVPPLPKLPDSVTRSMVFC 360
>TC19329 similar to PIR|T52134|T52134 Zwille protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(7%)
Length = 623
Score = 47.8 bits (112), Expect = 8e-06
Identities = 32/92 (34%), Positives = 47/92 (50%), Gaps = 7/92 (7%)
Frame = +3
Query: 843 FSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQIGQFMKFEDKSDTSSSHGGLT 902
F+ D +Q L ++L Y Y R T ++SVV P YAHLAA + +F ++ + S G T
Sbjct: 3 FTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFR-ARFYAGPEELQENGSTGYWT 179
Query: 903 -------AAGVAPVVPQLPKLQDSVSSSMFFC 927
AAG V P +++V MF+C
Sbjct: 180 WFQR*QRAAGECGVKPFASLGKENVKRVMFYC 275
>TC9440 similar to UP|Q8LNZ9 (Q8LNZ9) AGO1 homologous protein, partial (5%)
Length = 639
Score = 38.1 bits (87), Expect = 0.006
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +2
Query: 867 SVVAPICYAHLAATQIGQFMK-------FEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDS 919
SVV P YAHLAA + +M+ +TS+S G AG V P LP L+++
Sbjct: 2 SVVPPAYYAHLAAFRARFYMEPDMQENGSSGDGNTSNSSKGTRVAGECGVKP-LPALKEN 178
Query: 920 VSSSMFFC 927
V MF+C
Sbjct: 179 VKRVMFYC 202
>AV771168
Length = 458
Score = 34.3 bits (77), Expect = 0.092
Identities = 23/68 (33%), Positives = 34/68 (49%), Gaps = 10/68 (14%)
Frame = -3
Query: 11 GNGNGNEDLMPPPPPPPIVPADVEPVKVDL-------LDLPPEPVKKKLPTRLPIAR--- 60
G G+ E + PPPPPP P D ++ L D+ P P+ L T P++R
Sbjct: 261 GAGDWGEAVAPPPPPPIPTPVDCASHRLGLELVFF**YDVVPSPIYFSLST-YPLSRIWI 85
Query: 61 KGLGSKGT 68
+ +GS+GT
Sbjct: 84 RFVGSQGT 61
>CN825698
Length = 704
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +1
Query: 21 PPPPPPPIVPADVEPVKVDLLDLPPEPVKKK 51
PPPPPPP P + P DLPP P +++
Sbjct: 133 PPPPPPPPPPPSLPPPSDS--DLPPPPARRR 219
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,973,152
Number of Sequences: 28460
Number of extensions: 248831
Number of successful extensions: 4174
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 2361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3238
length of query: 927
length of database: 4,897,600
effective HSP length: 99
effective length of query: 828
effective length of database: 2,080,060
effective search space: 1722289680
effective search space used: 1722289680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0031.13