TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0030.6
         (780 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AI967630                                                              172  2e-73
TC18736 similar to UP|Q40485 (Q40485) C1C-Nt1 protein, partial (...   151  4e-37
TC9208 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial (16%)   116  2e-26
TC11144 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial (...    97  8e-21
AV414753                                                               96  3e-20
TC13590 homologue to GB|AAC26247.2|6382041|F9D12 Arabidopsis tha...    43  2e-04
AV406581                                                               37  0.009
AV412860                                                               31  0.66
TC11390 similar to UP|Q8L993 (Q8L993) Carbohydrate kinase-like p...    30  1.1
BP061163                                                               30  1.9
BI418928                                                               29  2.5
TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a hom...    28  5.6
TC7857 similar to UP|Q89L62 (Q89L62) Blr4686 protein, partial (7%)     28  7.3
TC12700 similar to UP|P93390 (P93390) Phosphate/phosphoenolpyruv...    27  9.6

>AI967630 
          Length = 457

 Score =  172 bits (437), Expect(2) = 2e-73
 Identities = 89/90 (98%), Positives = 89/90 (98%)
 Frame = +3

Query: 489 KKSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVADVF 548
           KKSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVADV 
Sbjct: 15  KKSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVADVC 194

Query: 549 NANIYDLIMKSKGLPYLETHAEPYMRQLTV 578
           NANIYDLIMKSKGLPYLETHAEPYMRQLTV
Sbjct: 195 NANIYDLIMKSKGLPYLETHAEPYMRQLTV 284



 Score =  121 bits (303), Expect(2) = 2e-73
 Identities = 57/58 (98%), Positives = 58/58 (99%)
 Frame = +1

Query: 578 VGDVVTGPLQIFHGYEKVRNVVFVLKTTSHNGFPVIDEPPFSEAPVLFGIILRHHLLT 635
           +GDVVTGPLQIFHGYEKVRNVVFVLKTTSHNGFPVIDEPPFSEAPVLFGIILRHHLLT
Sbjct: 283 LGDVVTGPLQIFHGYEKVRNVVFVLKTTSHNGFPVIDEPPFSEAPVLFGIILRHHLLT 456


>TC18736 similar to UP|Q40485 (Q40485) C1C-Nt1 protein, partial (15%)
          Length = 815

 Score =  151 bits (381), Expect = 4e-37
 Identities = 70/135 (51%), Positives = 96/135 (70%)
 Frame = +1

Query: 625 FGIILRHHLLTLLRKKVFMSAPMAMGGDVLRQFSADDFAKRGSDRGERIEDIHLTQEEMD 684
           FG++LR HLL LL+ K F    +     ++ + S  DF K GS +G ++ED+ L +EE+D
Sbjct: 16  FGLVLRSHLLVLLKAKNFTRDRVFADQSIIDKVSVLDFGKAGSGKGIKLEDLDLEEEELD 195

Query: 685 MFIDLHPFTNASPYTVVESMSLGKALILFRELGLRHLLVIPKIPSRSPVVGILTRHDFTA 744
           M++DLHP TN+SP+TVVE+MSL KA I+FR+ GLRH+ V+PK   R PVVGILTRHDF  
Sbjct: 196 MYVDLHPITNSSPHTVVETMSLAKAAIIFRQQGLRHMCVVPKSQGRPPVVGILTRHDFMP 375

Query: 745 EHILGTHPYLVRSRW 759
           EH+LG +P +   +W
Sbjct: 376 EHVLGLYPDIKHHKW 420


>TC9208 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial (16%)
          Length = 613

 Score =  116 bits (290), Expect = 2e-26
 Identities = 62/139 (44%), Positives = 95/139 (67%), Gaps = 3/139 (2%)
 Frame = +1

Query: 628 ILRHHLLTLLRKKVFMSAPMAMGG-DVLRQFSADDFAKRGSDRGERIEDIHLTQEEMDMF 686
           ILR HL+  L+KK F+         +V  +F++ + A+RG+     +E++ +T+EEM+MF
Sbjct: 1   ILRAHLIQALKKKWFLKERRRTEEWEVREKFTSVELAERGN-----MEEVAITREEMEMF 165

Query: 687 IDLHPFTNASPYTVVESMSLGKALILFRELGLRHLLVIPKIPSR--SPVVGILTRHDFTA 744
           +DLHP TN +P+TV+ES+S+ KA+ILFR++GLRHLLV+PK  +   SPV+GILTR D   
Sbjct: 166 VDLHPLTNTTPFTVLESVSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLP 345

Query: 745 EHILGTHPYLVRSRWKRLR 763
            +IL   P+L + + +  R
Sbjct: 346 YNILTVFPHLAKHKNREKR 402


>TC11144 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial (14%)
          Length = 557

 Score = 97.4 bits (241), Expect = 8e-21
 Identities = 49/114 (42%), Positives = 71/114 (61%)
 Frame = +1

Query: 15  LRQPLLSSQRSIINSSSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGSLQIFQYVLM 74
           L QPLL  +   + SS+ +A+VGA V  IESLDYEI EN+ FK +WRSR  +++ QY+ +
Sbjct: 217 LNQPLLIKRNRTL-SSNPLALVGAKVSYIESLDYEINENDLFKHNWRSRSRVEVLQYIFL 393

Query: 75  KWLLCFLIGTILGLIGFCNNLAVENLAGVKFVVTSNMMLHKRFSLAFVTFFASN 128
           KW L  L+G + G++    NLAVEN+AG K +     +  +R+   F+ F   N
Sbjct: 394 KWTLALLVGLLTGIMATLINLAVENIAGYKLLAVLRYIHTERYLAGFLYFTGVN 555


>AV414753 
          Length = 250

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 43/72 (59%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
 Frame = +2

Query: 381 ASCQPC---PADPVEPCPTIGRSGIYKKFQCPPGHYNDLASLIFNTNDDAIRNLFSKNTD 437
           A C PC   P D    CPT GRSG +K+F CPPGHYNDLA+L+  TNDDA+RN+FS NT 
Sbjct: 2   AKCTPCGSLPPDSESVCPTNGRSGNFKQFNCPPGHYNDLATLLLTTNDDAVRNIFSTNTS 181

Query: 438 SEFQYSSMFIFF 449
            E+Q  S+ IFF
Sbjct: 182 QEYQPFSLLIFF 217


>TC13590 homologue to GB|AAC26247.2|6382041|F9D12 Arabidopsis thaliana CLC-d
           chloride channel protein (GB:Z71450); coded for by A.
           thaliana cDNA T44764 {Arabidopsis thaliana;} , partial
           (5%)
          Length = 501

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 24/44 (54%), Positives = 30/44 (67%)
 Frame = +3

Query: 702 ESMSLGKALILFRELGLRHLLVIPKIPSRSPVVGILTRHDFTAE 745
           E MSL K   LF +LGLRHL V+P+ PSR  V+G++TR D   E
Sbjct: 3   EDMSLTKVYHLFXQLGLRHLFVVPR-PSR--VLGLITRKDLLIE 125


>AV406581 
          Length = 198

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 15  LRQPLLSSQRSIINSSSQVAIVGANVCPIESLDYEIFENEFF 56
           + QPLL  +   + SS+ +A+VGA V   ESLDYEI EN+ F
Sbjct: 75  VNQPLLIKRNRTL-SSNPLALVGAKVWMEESLDYEINENDLF 197


>AV412860 
          Length = 288

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
 Frame = +1

Query: 582 VTGPLQ-----IFHGYEKVRNVVFVLKTTSHNGFPVIDEPPFSEAP 622
           VTG LQ     +FH   K+R ++F LKT   N       PPF E P
Sbjct: 145 VTGTLQSVRDALFHITSKIREIIFPLKTPPPNFGVPPHLPPFPEMP 282


>TC11390 similar to UP|Q8L993 (Q8L993) Carbohydrate kinase-like protein,
           partial (26%)
          Length = 577

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 9/81 (11%)
 Frame = +3

Query: 417 ASLIFNTNDDA--IRNLFSK-NTDSEFQYSSMFIFFIT------GFFLSILSCGVVVPAG 467
           A LIF  +D+A  + N  +K NT S  +Y S F+  ++      G ++ +    V +P  
Sbjct: 27  ADLIFANSDEARALCNFDAKENTASVTRYLSQFVPLVSVTDGPKGSYIGVNGEAVYIPPS 206

Query: 468 VFVPIIVTGASYGRFVGMLFG 488
             VP+   GA      G+L+G
Sbjct: 207 PCVPVDTCGAGDAYASGILYG 269


>BP061163 
          Length = 355

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/46 (32%), Positives = 19/46 (40%)
 Frame = +1

Query: 372 CLLFGLPWLASCQPCPADPVEPCPTIGRSGIYKKFQCPPGHYNDLA 417
           CL  G PWL SC    +D   PC  +       +   P G+ N  A
Sbjct: 196 CLCSGFPWLVSCL---SDDSHPCTDLASRDSESQLSMPCGNDNGFA 324


>BI418928 
          Length = 496

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 27/88 (30%), Positives = 40/88 (44%)
 Frame = -1

Query: 453 FFLSILSCGVVVPAGVFVPIIVTGASYGRFVGMLFGKKSNLNHGLYAVLGAASFLGGSMR 512
           F  ++L  GV+V +  F       +S G F+  +FG  S    G   +  AASFLGG   
Sbjct: 415 FITTVLCLGVLVFSSAFFSSGFVFSSSG-FLSSVFGFSSGFFSG-GGLSPAASFLGGEET 242

Query: 513 TTVSLCVIILELTNNLLLLPLIMMVLLV 540
           ++  L V    L+  L+     M V L+
Sbjct: 241 SSTFLLVFSASLSRTLVGSTFPMTVSLL 158


>TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a homolog -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (87%)
          Length = 1191

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +2

Query: 450 ITGFFLSILSCGVVVPAGVFVPIIVTGASYG 480
           I G++LSI     + P  VFVP+I++   YG
Sbjct: 962 ILGWYLSITCPFFIRPKYVFVPLIISSFGYG 1054


>TC7857 similar to UP|Q89L62 (Q89L62) Blr4686 protein, partial (7%)
          Length = 1734

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/75 (21%), Positives = 38/75 (50%)
 Frame = -2

Query: 554 DLIMKSKGLPYLETHAEPYMRQLTVGDVVTGPLQIFHGYEKVRNVVFVLKTTSHNGFPVI 613
           + I ++K +P L+++ E  + +L   D+ +        ++++R   FV  +  +N   ++
Sbjct: 611 ETIYQAKFIPALKSNLERVVTKLGPKDISSPTYPATRMHKRLRRSFFVTLSEGNNE*RLM 432

Query: 614 DEPPFSEAPVLFGII 628
            + PFS +    GI+
Sbjct: 431 QQRPFSRSDFSAGIV 387


>TC12700 similar to UP|P93390 (P93390) Phosphate/phosphoenolpyruvate
           translocator, partial (9%)
          Length = 442

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/30 (36%), Positives = 19/30 (62%)
 Frame = -1

Query: 207 GQGGSKRYGLTWKWLRYFKNDRDRRDLIVC 236
           G+GG +R GL ++ L+  + +R   D +VC
Sbjct: 121 GEGGERRRGLHFRDLKESEMERREHDCVVC 32


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.142    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,567,352
Number of Sequences: 28460
Number of extensions: 222188
Number of successful extensions: 1602
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of query: 780
length of database: 4,897,600
effective HSP length: 97
effective length of query: 683
effective length of database: 2,136,980
effective search space: 1459557340
effective search space used: 1459557340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)