TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0030.2
         (82 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11545 similar to UP|RS21_ORYSA (P35687) 40S ribosomal protein ...   167  3e-43
TC10602 similar to UP|RS21_ORYSA (P35687) 40S ribosomal protein ...   118  2e-39
BP083308                                                              115  1e-27
BP078616                                                               33  0.007
AV427146                                                               23  7.4
TC16367 similar to UP|Q8W3L8 (Q8W3L8) Xyloglucan endo-transglyco...    23  9.6
TC15449                                                                23  9.6
BP080445                                                               23  9.6

>TC11545 similar to UP|RS21_ORYSA (P35687) 40S ribosomal protein S21,
           complete
          Length = 436

 Score =  167 bits (423), Expect = 3e-43
 Identities = 81/81 (100%), Positives = 81/81 (100%)
 Frame = +3

Query: 1   MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
           MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA
Sbjct: 81  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 260

Query: 61  QGDADSAIDRLWQKKKAEIKQ 81
           QGDADSAIDRLWQKKKAEIKQ
Sbjct: 261 QGDADSAIDRLWQKKKAEIKQ 323


>TC10602 similar to UP|RS21_ORYSA (P35687) 40S ribosomal protein S21,
           complete
          Length = 462

 Score =  118 bits (295), Expect(2) = 2e-39
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 27  KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ 82
           KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ
Sbjct: 127 KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ 294



 Score = 57.8 bits (138), Expect(2) = 2e-39
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 1  MQNEEGQITELYIPRKCSATNRLITAK 27
          MQNEEGQITELYIPRKCSATNRLITAK
Sbjct: 48 MQNEEGQITELYIPRKCSATNRLITAK 128


>BP083308 
          Length = 314

 Score =  115 bits (288), Expect = 1e-27
 Identities = 50/78 (64%), Positives = 67/78 (85%)
 Frame = -1

Query: 1   MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
           M N+EGQ+ +LYIPRKC+ TN+LITAKDHASVQINIGHLD +GVY+ Q++T+A+ G +RA
Sbjct: 287 MINDEGQVVDLYIPRKCAWTNKLITAKDHASVQINIGHLDANGVYSNQYTTFAIAGNVRA 108

Query: 61  QGDADSAIDRLWQKKKAE 78
            G+ DSA+D +W+KK+ E
Sbjct: 107 MGEGDSALDIMWRKKQVE 54


>BP078616 
          Length = 466

 Score = 33.5 bits (75), Expect = 0.007
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -1

Query: 60  AQGDADSAIDRLWQKKKAEIKQQ 82
           + GDAD A+D LW +KKAEIK Q
Sbjct: 448 SSGDADRALDCLW*RKKAEIKLQ 380


>AV427146 
          Length = 428

 Score = 23.5 bits (49), Expect = 7.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 47  GQFSTYALCGYIRAQGD 63
           G+FS + +CGY+   G+
Sbjct: 329 GRFSLHWICGYVHGHGN 379


>TC16367 similar to UP|Q8W3L8 (Q8W3L8) Xyloglucan endo-transglycosylase,
            partial (54%)
          Length = 1093

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 11/21 (52%), Positives = 16/21 (75%)
 Frame = -2

Query: 31   SVQINIGHLDESGVYNGQFST 51
            S+QIN   L E+G+Y GQ++T
Sbjct: 1089 SIQIN---LFETGIYIGQYNT 1036


>TC15449 
          Length = 553

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 45  YNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEI 79
           ++G+F+     GY R   D    I  LW  K A+I
Sbjct: 254 HHGKFNADHYRGYFRVIEDETIRIPNLWS*KIAQI 358


>BP080445 
          Length = 158

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 13/34 (38%), Positives = 17/34 (49%)
 Frame = +3

Query: 23 LITAKDHASVQINIGHLDESGVYNGQFSTYALCG 56
          LIT K   ++Q   G L +SG+Y G      L G
Sbjct: 51 LITXKLQLTLQFMDGWLSKSGLYLGSHPQSQLSG 152


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,205,718
Number of Sequences: 28460
Number of extensions: 10088
Number of successful extensions: 33
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of query: 82
length of database: 4,897,600
effective HSP length: 58
effective length of query: 24
effective length of database: 3,246,920
effective search space: 77926080
effective search space used: 77926080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)