BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0030.13
(117 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV410364 37 0.001
TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%) 28 0.52
TC12711 similar to UP|Q84Y18 (Q84Y18) CAX-interacting protein 4,... 24 5.8
BP054504 24 5.8
TC8098 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), p... 24 5.8
TC8592 24 7.6
BP030437 23 9.9
BP084339 23 9.9
TC14236 similar to UP|Q9LE73 (Q9LE73) T10O22.27 (F15H18.18) (At1... 23 9.9
BP042555 23 9.9
TC9788 similar to PIR|T47605|T47605 RING finger-like protein - A... 23 9.9
AV769508 23 9.9
TC10827 23 9.9
>AV410364
Length = 370
Score = 36.6 bits (83), Expect = 0.001
Identities = 18/43 (41%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Frame = +2
Query: 72 PILSQQDYHLGRLQRLVEDYV----HVVADKYPYWNRSNGADH 110
P LS ++ H G L +Y H + ++YPYWNRS+G DH
Sbjct: 50 PHLSMEE-HKGLRSSLTLEYYKNAYHHIVEQYPYWNRSSGRDH 175
>TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%)
Length = 555
Score = 27.7 bits (60), Expect = 0.52
Identities = 22/72 (30%), Positives = 31/72 (42%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 PFKARHPDEANLFLIPFSIS-NIVQYVYMPIL-SQQDYHLGRLQRLVEDYVHVVADKYPY 101
P P AN +P+ S + ++Y+Y P S D+ L + L D D
Sbjct: 311 PCLTADPTAANAIYLPYYASFDSLRYLYGPEYNSSADHGLHLFRFLRHD------DNPEI 472
Query: 102 WNRSNGADHFLL 113
W R G DHFL+
Sbjct: 473 WERHMGHDHFLI 508
>TC12711 similar to UP|Q84Y18 (Q84Y18) CAX-interacting protein 4, partial
(5%)
Length = 500
Score = 24.3 bits (51), Expect = 5.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 51 DEANLFLIPFSISNIVQYVYMPILSQQDY-HLGRLQRLV 88
D A LF+IP S + +++Y+P Y HL + ++
Sbjct: 335 DFATLFIIPTGASPLFRFLYIPAHPGNHYIHLNQCHSMM 219
>BP054504
Length = 524
Score = 24.3 bits (51), Expect = 5.8
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +3
Query: 5 LKVWVYEEGEQPLVHDGPLKGLYSIEGQFMDEIDSCRKSPFKARHPD 51
++ W + + H KGL +EG+ D C K ++ PD
Sbjct: 315 IQAWT*GDNFSNVTHQRQYKGLRDLEGEMEDH---CEKFLYQTAAPD 446
>TC8098 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), partial
(56%)
Length = 1349
Score = 24.3 bits (51), Expect = 5.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 83 RLQRLVEDYVHVVADKYPYW 102
R+ R + Y HVV + Y +W
Sbjct: 249 RMPRCIHGYFHVVNNDYTHW 308
>TC8592
Length = 1086
Score = 23.9 bits (50), Expect = 7.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Frame = +1
Query: 88 VEDYVHVVADKYPYWNRSNGADHFL 112
+ D H + P WN G HF+
Sbjct: 190 IYDITHRYVPEMPVWNSKEGLGHFV 264
>BP030437
Length = 275
Score = 23.5 bits (49), Expect = 9.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 93 HVVADKYPYWNRSNGADHFL 112
H V ++ +W R N DHF+
Sbjct: 248 HHVWKEFRFWRRLNDDDHFI 189
>BP084339
Length = 365
Score = 23.5 bits (49), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 99 YPYWNRSNGADHFLLSC 115
YP WN++ D +LL C
Sbjct: 116 YPLWNQNGDMDLWLLVC 166
>TC14236 similar to UP|Q9LE73 (Q9LE73) T10O22.27 (F15H18.18) (At1g18300),
partial (50%)
Length = 658
Score = 23.5 bits (49), Expect = 9.9
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = +3
Query: 4 RLKVWVYEEGEQPLVHDG 21
+L W Y+ QP VH+G
Sbjct: 483 KLGKWYYKSKRQPTVHEG 536
>BP042555
Length = 510
Score = 23.5 bits (49), Expect = 9.9
Identities = 13/45 (28%), Positives = 19/45 (41%)
Frame = +3
Query: 23 LKGLYSIEGQFMDEIDSCRKSPFKARHPDEANLFLIPFSISNIVQ 67
++G G M SC+ + PDE NL S+ N+ Q
Sbjct: 96 IRGFAGASGPAMMITASCKNNKAVILDPDERNLLSQVHSLLNVYQ 230
>TC9788 similar to PIR|T47605|T47605 RING finger-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (6%)
Length = 696
Score = 23.5 bits (49), Expect = 9.9
Identities = 7/15 (46%), Positives = 11/15 (72%)
Frame = +2
Query: 32 QFMDEIDSCRKSPFK 46
+F+ + D CR+SP K
Sbjct: 227 EFLQDADKCRRSPIK 271
>AV769508
Length = 386
Score = 23.5 bits (49), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 83 RLQRLVEDYVHVVADKYPYWNR 104
+L R+ D VHV ADK P +R
Sbjct: 266 KLTRVALDCVHVEADKRPNMSR 201
>TC10827
Length = 874
Score = 23.5 bits (49), Expect = 9.9
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = +1
Query: 3 KRLKVWVYEEGEQPLVHD 20
+RL+ W+ G+ P HD
Sbjct: 466 ERLQFWIVRSGQSPTSHD 519
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.142 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,408,849
Number of Sequences: 28460
Number of extensions: 30918
Number of successful extensions: 121
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of query: 117
length of database: 4,897,600
effective HSP length: 78
effective length of query: 39
effective length of database: 2,677,720
effective search space: 104431080
effective search space used: 104431080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0030.13