TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0030.10
         (482 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15912 similar to UP|NGP1_HUMAN (Q13823) Autoantigen NGP-1, par...   344  e-115
AV773972                                                              155  1e-38
TC12724                                                                99  2e-21
CB826694                                                               73  9e-14
BP053926                                                               36  0.012
CB828788                                                               36  0.016
TC11717 similar to UP|Q7VEZ6 (Q7VEZ6) Probable GTP binding prote...    30  1.1
BP056197                                                               29  1.5
BP085049                                                               29  1.9
AV420741                                                               28  2.5
TC9718 weakly similar to UP|Q9FI96 (Q9FI96) Glucuronosyl transfe...    27  5.7
BP056955                                                               27  7.4
BP075890                                                               27  9.7

>TC15912 similar to UP|NGP1_HUMAN (Q13823) Autoantigen NGP-1, partial (25%)
          Length = 670

 Score =  344 bits (883), Expect(2) = e-115
 Identities = 167/173 (96%), Positives = 170/173 (97%)
 Frame = +2

Query: 142 QVLDARDPQGTRCYHLEKHLKENCKYKHMMLLLNKCDLIPAWATKGWLRVLSKEYPTLAF 201
           QVLDARDPQGTRCYHLEKHLKENCKYKHM+LLLNKCDLIPAWATKGWLRVLSKEYPTLAF
Sbjct: 2   QVLDARDPQGTRCYHLEKHLKENCKYKHMVLLLNKCDLIPAWATKGWLRVLSKEYPTLAF 181

Query: 202 HASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPI 261
           HASINKSFGKGSLLSVLRQFARLK+DKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPI
Sbjct: 182 HASINKSFGKGSLLSVLRQFARLKTDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPI 361

Query: 262 PGETKVWQYITLTKRIFLIDCPGVVYQNKDSEADVVLKGVVRVTNLKDAADRI 314
           PGETKVWQYITLTKR FLIDCPGVVYQNKD+E DVVLKGVVRVTNLKDAAD I
Sbjct: 362 PGETKVWQYITLTKRTFLIDCPGVVYQNKDTETDVVLKGVVRVTNLKDAADHI 520



 Score = 87.0 bits (214), Expect(2) = e-115
 Identities = 41/49 (83%), Positives = 44/49 (89%)
 Frame = +3

Query: 315 GEVLKRVMKEHLHRAYKIKEWENENDFLLQLCKLTGKLLKGGEPDLMTA 363
           GEVLKRV  EHL RAY+I+EW +ENDFLLQLCK TGKLLKGGEPDLMTA
Sbjct: 522 GEVLKRVKLEHLQRAYRIQEWVDENDFLLQLCKSTGKLLKGGEPDLMTA 668


>AV773972 
          Length = 491

 Score =  155 bits (392), Expect = 1e-38
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +1

Query: 336 ENENDFLLQLCKLTGKLLKGGEPDLMTAAKMVLHDWQRGKIPFFVPPPQQEDLSEEPIVN 395
           ENENDFLLQLCK TGKLLKGGEPDLMTAAKMVLHDWQRGKIPFFVPPPQQEDLSEEP+VN
Sbjct: 262 ENENDFLLQLCKWTGKLLKGGEPDLMTAAKMVLHDWQRGKIPFFVPPPQQEDLSEEPMVN 441

Query: 396 GLDVDDGVDSNQASAA 411
           GLDVDDGVDSNQASAA
Sbjct: 442 GLDVDDGVDSNQASAA 489



 Score = 73.6 bits (179), Expect = 7e-14
 Identities = 37/51 (72%), Positives = 41/51 (79%), Gaps = 3/51 (5%)
 Frame = +2

Query: 302 VRVTNLKDAADRIGEVLKRVMKEHLHRAYKIKEWE---NENDFLLQLCKLT 349
           VRVTNLKDAADRIGEVLKRVMKEHLHRAYKIKEW    + N  + +  K+T
Sbjct: 125 VRVTNLKDAADRIGEVLKRVMKEHLHRAYKIKEWHVFLSPNSMMTRKMKMT 277


>TC12724 
          Length = 428

 Score = 99.0 bits (245), Expect = 2e-21
 Identities = 47/47 (100%), Positives = 47/47 (100%)
 Frame = +3

Query: 436 ENELEEEADNLLLISGDSPDGDVLDSDSDTSEQDPDTEVPYEQPHSA 482
           ENELEEEADNLLLISGDSPDGDVLDSDSDTSEQDPDTEVPYEQPHSA
Sbjct: 3   ENELEEEADNLLLISGDSPDGDVLDSDSDTSEQDPDTEVPYEQPHSA 143


>CB826694 
          Length = 523

 Score = 73.2 bits (178), Expect = 9e-14
 Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 4/61 (6%)
 Frame = +2

Query: 46  QSNSRV----QRPFTPVFGPKTKRKRPCLLAFDYQSLAKKAHVAQEAFEEKYAAGASGTA 101
           Q  SRV    ++PFT  FGPKTKRKRP LLA DY+SLAKKA  + EAFEEKY  G+SGTA
Sbjct: 347 QKQSRVHLLDRQPFTDAFGPKTKRKRPGLLASDYESLAKKADDSHEAFEEKY--GSSGTA 520

Query: 102 E 102
           E
Sbjct: 521 E 523



 Score = 27.7 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 22 KKKESSGKSKQSLDANGNNDAKMEQSNS 49
          +K   SGK K SLD N +NDA  ++  S
Sbjct: 2  RKVNVSGKPKHSLDVNRSNDATKKEVRS 85


>BP053926 
          Length = 562

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 38/145 (26%), Positives = 64/145 (43%), Gaps = 8/145 (5%)
 Frame = +1

Query: 174 LNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKS-DKQAIS 232
           L +C  +   A      VL +  P+LA+            L  + +  ARL + D    +
Sbjct: 67  LYRCKSLKVAALGRMCTVLKRIAPSLAY------------LEQIRQHMARLPAIDPNTRT 210

Query: 233 VGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKV-------WQYITLTKRIFLIDCPGV 285
           V   GYPNVGKSS IN +   +V +V P    TK        ++Y+    R  +ID PG+
Sbjct: 211 VLICGYPNVGKSSFINKITRADV-EVQPYAFTTKSLFVGHTDYKYL----RYQVIDTPGI 375

Query: 286 VYQNKDSEADVVLKGVVRVTNLKDA 310
           + +  +    + +  +  + +L+ A
Sbjct: 376 LDRPFEDRNIIEMCSITALAHLRAA 450


>CB828788 
          Length = 448

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +2

Query: 225 KSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETK---VWQYITLTKRIFLID 281
           +  K  + +  +G PNVGKS+++NTL  ++   V P  G T+     Q+    + I+L+D
Sbjct: 116 EESKLPLQLAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGLTRDSIRTQFEFEGRTIYLVD 295

Query: 282 CPGVVYQNKDSE 293
             G + + K  +
Sbjct: 296 TAGWLQRTKQEK 331


>TC11717 similar to UP|Q7VEZ6 (Q7VEZ6) Probable GTP binding protein, partial
           (5%)
          Length = 629

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 15/27 (55%), Positives = 19/27 (69%)
 Frame = +3

Query: 224 LKSDKQAISVGFIGYPNVGKSSVINTL 250
           L S  ++ S+G IG PNVGKSS+I  L
Sbjct: 36  LPSRSRS*SLGLIGLPNVGKSSLIIVL 116


>BP056197 
          Length = 585

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 231 ISVGFIGYPNVGKSSVINTL 250
           +  G +G PNVGKS++ NTL
Sbjct: 140 LKXGIVGLPNVGKSTLFNTL 199


>BP085049 
          Length = 402

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 14/42 (33%), Positives = 21/42 (49%)
 Frame = +1

Query: 59  FGPKTKRKRPCLLAFDYQSLAKKAHVAQEAFEEKYAAGASGT 100
           F P T+  + C LA  Y S+ +  +  Q   +E Y A  +GT
Sbjct: 205 FSPYTRALKSCFLAISY*SMPEILYAGQPECQECYEALVAGT 330


>AV420741 
          Length = 216

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 23/70 (32%)
 Frame = +2

Query: 188 WLRVLSKEYPTLAFHAS-----------------------INKSFGKGSLLSVLRQFARL 224
           WL+ L +E PT+AF  S                       ++   G  +LL +L+ ++R 
Sbjct: 2   WLKYLREELPTVAFKCSTQQQRSNLGWKSSKTAKSSNTLQLSDCLGADTLLKLLKNYSRS 181

Query: 225 KSDKQAISVG 234
              K++I+VG
Sbjct: 182 HEIKKSITVG 211


>TC9718 weakly similar to UP|Q9FI96 (Q9FI96) Glucuronosyl transferase-like
           protein, partial (6%)
          Length = 485

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 188 WLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFI 236
           WL  +S +   +  + SI  +FG  S+L +++        K AI+  F+
Sbjct: 460 WLPPISSKLGIMCIYLSIFSAFGISSVLDLVKAHLEPSKHKTAIATDFV 314


>BP056955 
          Length = 581

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
 Frame = +2

Query: 358 PDLMTAAKMVLHDWQRGKIPFFVPPPQQEDLSE-EPIVNGL--DVDDGVDSNQASAAIK 413
           PDL T    + H  Q    P   P PQ +  S+ +P    L  D+ D + +++AS+A K
Sbjct: 140 PDLFTTVSSIYHRSQPQPQPQPQPQPQPQPQSQPQPQQQDLLADLQDALSNHRASSASK 316


>BP075890 
          Length = 535

 Score = 26.6 bits (57), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 87  EAFEEKYAAGASGTAEANEADGFIDL 112
           +AF+EKY    SGTAE   +D  + L
Sbjct: 404 KAFKEKYFRSDSGTAEVGVSDDLLHL 327


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,438,428
Number of Sequences: 28460
Number of extensions: 94762
Number of successful extensions: 376
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of query: 482
length of database: 4,897,600
effective HSP length: 94
effective length of query: 388
effective length of database: 2,222,360
effective search space: 862275680
effective search space used: 862275680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)