BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0029b.5
(313 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11019 homologue to UP|Q9MB04 (Q9MB04) Type 2A protein phosphat... 469 e-133
TC16665 homologue to UP|P2A_TOBAC (Q9XGH7) Serine/threonine prot... 422 e-119
TC11010 homologue to UP|PPX2_ARATH (P48528) Serine/threonine pro... 318 7e-88
AV427577 200 3e-52
TC17385 homologue to UP|Q42912 (Q42912) Ser/Thr protein phosphat... 171 1e-43
CN825613 167 2e-42
TC12870 homologue to GB|AAC39461.1|3153205|ATU80922 serine/threo... 112 2e-40
TC15832 homologue to UP|PP1_MEDVA (P48488) Serine/threonine prot... 154 1e-38
TC16793 homologue to UP|Q9MB06 (Q9MB06) Type 2A protein phosphat... 145 7e-36
TC15730 homologue to UP|O65844 (O65844) Protein phosphatase 1, c... 136 5e-33
TC9011 UP|P2A_MEDSA (Q06009) Serine/threonine protein phosphatas... 118 1e-27
TC15732 homologue to UP|Q8LSN3 (Q8LSN3) Serine/threonine protein... 115 1e-26
TC9322 UP|P2A_MEDSA (Q06009) Serine/threonine protein phosphatas... 115 1e-26
TC17330 homologue to UP|O65844 (O65844) Protein phosphatase 1, c... 107 3e-24
AV422344 102 8e-23
TC8812 homologue to UP|Q84K11 (Q84K11) Type 5 protein serine/thr... 97 4e-21
TC20093 homologue to UP|P2A1_ARATH (Q07098) Serine/threonine pro... 83 7e-17
AV418066 75 1e-14
TC9893 homologue to UP|PP1_MEDVA (P48488) Serine/threonine prote... 65 1e-11
AV776105 63 7e-11
>TC11019 homologue to UP|Q9MB04 (Q9MB04) Type 2A protein phosphatase-3
(Serine/threonine protein phosphatase) , partial (71%)
Length = 746
Score = 469 bits (1208), Expect = e-133
Identities = 223/223 (100%), Positives = 223/223 (100%)
Frame = +2
Query: 1 MGANSLPSESTHDLDEQISQLMQCKPLSEQQVKELCEKAKEILMEESNVQPVKSPVTICG 60
MGANSLPSESTHDLDEQISQLMQCKPLSEQQVKELCEKAKEILMEESNVQPVKSPVTICG
Sbjct: 77 MGANSLPSESTHDLDEQISQLMQCKPLSEQQVKELCEKAKEILMEESNVQPVKSPVTICG 256
Query: 61 DIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRG 120
DIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRG
Sbjct: 257 DIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRG 436
Query: 121 NHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIET 180
NHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIET
Sbjct: 437 NHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIET 616
Query: 181 LDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYT 223
LDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYT
Sbjct: 617 LDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYT 745
>TC16665 homologue to UP|P2A_TOBAC (Q9XGH7) Serine/threonine protein
phosphatase PP2A catalytic subunit , partial (67%)
Length = 855
Score = 422 bits (1086), Expect = e-119
Identities = 200/216 (92%), Positives = 208/216 (95%)
Frame = +3
Query: 1 MGANSLPSESTHDLDEQISQLMQCKPLSEQQVKELCEKAKEILMEESNVQPVKSPVTICG 60
+ +S+PS S +LDEQI+QLMQCKPLSEQ+V+ LCEKAKEILMEESNVQPVKSPVTICG
Sbjct: 207 LSMDSVPSNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMEESNVQPVKSPVTICG 386
Query: 61 DIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRG 120
DIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY QRITILRG
Sbjct: 387 DIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRQRITILRG 566
Query: 121 NHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIET 180
NHESRQITQVYGFYDECLRKYGNANVWK FTDLFD+FPLTALVESEIFCLHGGLSPSIET
Sbjct: 567 NHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIET 746
Query: 181 LDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGIS 216
LDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGIS
Sbjct: 747 LDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGIS 854
>TC11010 homologue to UP|PPX2_ARATH (P48528) Serine/threonine protein
phosphatase PP-X isozyme 2 , partial (70%)
Length = 770
Score = 318 bits (815), Expect = 7e-88
Identities = 147/211 (69%), Positives = 176/211 (82%), Gaps = 1/211 (0%)
Frame = +3
Query: 13 DLDEQISQLMQCKPLSEQQVKELCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAEL 72
DLD QI QL +C+PL E +VK LC KA EIL+EESNVQ V +PVTICGDIHGQF+D+ EL
Sbjct: 135 DLDRQIEQLKRCEPLKESEVKTLCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKEL 314
Query: 73 FRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRGNHESRQITQVYG 132
F++GG CP TNYLF+GD+VDRG+YSVET LL+ALKVRY RIT++RGNHESRQITQVYG
Sbjct: 315 FKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 494
Query: 133 FYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQE 192
FYDECLRKYG+ VW+ TD+FD+ L+AL+E++I +HGGLSP+I LD IR DR QE
Sbjct: 495 FYDECLRKYGSVKVWRYGTDVFDYLSLSALIENKIVSVHGGLSPAISRLDQIRTMDRKQE 674
Query: 193 VPHEGPMCDLLWSDPDDRC-GWGISPRGAGY 222
VPH+G MCDLLWSDP+D GWG+SPRGAG+
Sbjct: 675 VPHDGAMCDLLWSDPEDIVDGWGLSPRGAGF 767
>AV427577
Length = 301
Score = 200 bits (508), Expect = 3e-52
Identities = 87/100 (87%), Positives = 95/100 (95%)
Frame = +1
Query: 114 RITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGG 173
+IT+ RGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFD+ PLTAL+ES+IFCLHGG
Sbjct: 1 QITLTRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGG 180
Query: 174 LSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGW 213
LSPS++TLDNIR DR+QEVPHEGPMCDLLWSDPDDRCGW
Sbjct: 181 LSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGW 300
>TC17385 homologue to UP|Q42912 (Q42912) Ser/Thr protein phosphatase
homologous to PPX (Serine/threonine protein
phosphatase) , partial (35%)
Length = 325
Score = 171 bits (433), Expect = 1e-43
Identities = 76/107 (71%), Positives = 91/107 (85%)
Frame = +1
Query: 45 EESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLL 104
EESNVQPV SPVT+CGDIHGQFHDL +LF+ GG+ P+TNY+FMGD+VDRGY S+E T+L
Sbjct: 4 EESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGQVPETNYIFMGDFVDRGYNSLEVFTIL 183
Query: 105 VALKVRYHQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFT 151
+ LK RY IT+LRGN+ESRQ+TQVYGFYDEC RKYGNA+ W+ T
Sbjct: 184 LLLKARYPAHITLLRGNYESRQLTQVYGFYDECQRKYGNAHAWRYCT 324
>CN825613
Length = 257
Score = 167 bits (424), Expect = 2e-42
Identities = 73/85 (85%), Positives = 80/85 (93%)
Frame = +3
Query: 151 TDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDR 210
TDLFD+ PLTAL+ES+IFCLHGGLSPS++TLDNIR DR+QEVPHEGPMCDLLWSDPDDR
Sbjct: 3 TDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDR 182
Query: 211 CGWGISPRGAGYTFGQDISEQFNHT 235
CGW ISPRGAGYTFGQDI+ QFNHT
Sbjct: 183 CGWEISPRGAGYTFGQDIAGQFNHT 257
>TC12870 homologue to GB|AAC39461.1|3153205|ATU80922 serine/threonine
protein phosphatase type one {Arabidopsis thaliana;} ,
partial (55%)
Length = 546
Score = 112 bits (281), Expect(2) = 2e-40
Identities = 48/88 (54%), Positives = 67/88 (75%)
Frame = +3
Query: 84 YLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRGNHESRQITQVYGFYDECLRKYGN 143
YLF+GDYVDRG S+ET+ LL+A K+RY +I +LRGNHE +I ++YGFYDEC R++ N
Sbjct: 285 YLFLGDYVDRGKQSLETICLLLAYKIRYPDKIYLLRGNHEDAKINRIYGFYDECKRRF-N 461
Query: 144 ANVWKTFTDLFDFFPLTALVESEIFCLH 171
+WK FTD F+ P+ AL++ +I C+H
Sbjct: 462 VRLWKIFTDCFNCLPVAALIDEKIICMH 545
Score = 69.3 bits (168), Expect(2) = 2e-40
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Frame = +2
Query: 14 LDEQISQLMQCK-----PLSEQQVKELCEKAKEILMEESNVQPVKSPVTICGDIHGQFHD 68
LD+ I +L++ K LSE ++++LC A++I + + N+ +++P+ ICGDIHGQ+ D
Sbjct: 59 LDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPNLLELRAPIRICGDIHGQYQD 238
Query: 69 LAELFRIGGKCPDTNYLFMG 88
L LF GG P N L G
Sbjct: 239 LLRLFEYGGYPPSANLLVSG 298
>TC15832 homologue to UP|PP1_MEDVA (P48488) Serine/threonine protein
phosphatase PP1 , partial (47%)
Length = 638
Score = 154 bits (390), Expect = 1e-38
Identities = 72/147 (48%), Positives = 100/147 (67%), Gaps = 8/147 (5%)
Frame = +3
Query: 14 LDEQISQLMQCKP--------LSEQQVKELCEKAKEILMEESNVQPVKSPVTICGDIHGQ 65
LDE I +L+ K L+E +++ LC AKEI + + N+ +++P+ ICGD+HGQ
Sbjct: 201 LDEIIRRLVAAKNGRTTKQVNLTEAEIRLLCVSAKEIFLSQPNLLELEAPIKICGDVHGQ 380
Query: 66 FHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRGNHESR 125
F DL LF GG P+ NYLF+GDYVDRG S+ET+ LL++ K++Y + +LRGNHE
Sbjct: 381 FSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLSYKIKYKENFFLLRGNHECA 560
Query: 126 QITQVYGFYDECLRKYGNANVWKTFTD 152
I ++YGFYDEC R+Y N +WKTFTD
Sbjct: 561 SINRIYGFYDECKRRY-NVRLWKTFTD 638
>TC16793 homologue to UP|Q9MB06 (Q9MB06) Type 2A protein phosphatase-1
(Serine/threonine protein phosphatase) , partial (30%)
Length = 652
Score = 145 bits (367), Expect = 7e-36
Identities = 64/93 (68%), Positives = 78/93 (83%)
Frame = +2
Query: 221 GYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASIL 280
GYTFGQDI+ QF+HTN L LI+RAHQLVM+G+NW E+ VVT+FSAPNYCYR GNMA+IL
Sbjct: 2 GYTFGQDIAAQFHHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRYGNMAAIL 181
Query: 281 EVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
E+ + F+QF+PAPR+ EPD TR+TPDYFL
Sbjct: 182 EIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 280
>TC15730 homologue to UP|O65844 (O65844) Protein phosphatase 1, catalytic
beta subunit (Serine/threonine protein phosphatase) ,
partial (52%)
Length = 855
Score = 136 bits (342), Expect = 5e-33
Identities = 65/148 (43%), Positives = 92/148 (61%), Gaps = 1/148 (0%)
Frame = +1
Query: 155 DFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRC-GW 213
+F AL++ +I C+HGGLSP + LD IRN R +VP G +CDLLWSDP GW
Sbjct: 1 EFGTRAALIDEKILCMHGGLSPDLNNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEIQGW 180
Query: 214 GISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRC 273
G++ RG YTFG D +F + L LI RAHQ+V DG+ + +++VTIFSAPNYC
Sbjct: 181 GMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEF 360
Query: 274 GNMASILEVDDCKGHTFIQFEPAPRRGE 301
N +++ VD+ +F +PA ++ +
Sbjct: 361 DNAGAMMSVDETLMCSFQILKPADKKAK 444
>TC9011 UP|P2A_MEDSA (Q06009) Serine/threonine protein phosphatase PP2A
catalytic subunit , partial (17%)
Length = 599
Score = 118 bits (296), Expect = 1e-27
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = +3
Query: 261 VTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
VTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 3 VTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 161
>TC15732 homologue to UP|Q8LSN3 (Q8LSN3) Serine/threonine protein
phosphatase 2A , partial (39%)
Length = 612
Score = 115 bits (288), Expect = 1e-26
Identities = 49/89 (55%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Frame = +3
Query: 197 GPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAH 256
GP CDL+WSDP++ W +SPRGAG+ FG ++ +FNH N+L L+ RAHQLV +G +
Sbjct: 3 GPFCDLMWSDPEEIETWAVSPRGAGWLFGSRVTTEFNHINNLDLVCRAHQLVQEGLKYMF 182
Query: 257 EQK-VVTIFSAPNYCYRCGNMASILEVDD 284
K +VT++SAPNYCYRCGN+ASIL ++
Sbjct: 183 PDKGLVTVWSAPNYCYRCGNVASILSFNE 269
>TC9322 UP|P2A_MEDSA (Q06009) Serine/threonine protein phosphatase PP2A
catalytic subunit , partial (16%)
Length = 627
Score = 115 bits (287), Expect = 1e-26
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +2
Query: 263 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 2 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 154
>TC17330 homologue to UP|O65844 (O65844) Protein phosphatase 1, catalytic
beta subunit (Serine/threonine protein phosphatase) ,
partial (34%)
Length = 499
Score = 107 bits (266), Expect = 3e-24
Identities = 48/107 (44%), Positives = 76/107 (70%), Gaps = 7/107 (6%)
Frame = +2
Query: 14 LDEQISQLMQCK-------PLSEQQVKELCEKAKEILMEESNVQPVKSPVTICGDIHGQF 66
LD+ I++L++ + LSE ++++LC A+EI + + N+ +++P+ ICGD+HGQ+
Sbjct: 179 LDDIINRLLEVRGRPGKQVQLSESEIRQLCAAAREIFLHQPNLLELEAPIKICGDVHGQY 358
Query: 67 HDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQ 113
DL LF GG P++NYLF+GDYVDRG S+ET+ LL+A KV+Y +
Sbjct: 359 SDLLRLFEYGGLPPESNYLFLGDYVDRGKQSLETICLLLAYKVKYSE 499
>AV422344
Length = 479
Score = 102 bits (254), Expect = 8e-23
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Frame = +3
Query: 57 TICGDIHGQFHDLAELFRIGGKCPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYHQRI 115
T+CGD+HGQ++DL +F + G + N YLF GD+VDRG +S+E + L A K I
Sbjct: 69 TVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAI 248
Query: 116 TILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGL- 174
+ RGNHES+ + ++YGF E K + + + F ++F PL ++ ++F +HGGL
Sbjct: 249 HLARGNHESKSMNKIYGFEGEVRSKLNDTFI-ELFAEVFCCLPLAHVINEKVFVVHGGLF 425
Query: 175 SPSIETLDNIRNFDRVQE 192
S L +IR+ +R E
Sbjct: 426 SVDGVKLSDIRSINRFCE 479
>TC8812 homologue to UP|Q84K11 (Q84K11) Type 5 protein serine/threonine
phosphatase 62 kDa isoform, partial (24%)
Length = 787
Score = 97.1 bits (240), Expect = 4e-21
Identities = 43/98 (43%), Positives = 65/98 (65%)
Frame = +3
Query: 183 NIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIA 242
+IR+ +R E P EG MC+LLWSDP G G S RG G +FG D++++F N+L L+
Sbjct: 3 DIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVV 182
Query: 243 RAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASIL 280
R+H++ +G+ H K++T+FSAPNYC + GN + +
Sbjct: 183 RSHEVKDEGYEIEHNGKLITVFSAPNYCDQMGNKGAFI 296
>TC20093 homologue to UP|P2A1_ARATH (Q07098) Serine/threonine protein
phosphatase PP2A-1 catalytic subunit , partial (17%)
Length = 489
Score = 82.8 bits (203), Expect = 7e-17
Identities = 35/51 (68%), Positives = 42/51 (81%)
Frame = +3
Query: 263 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
+FSAPNYCYRCGNMA+ILE+ + F+QF+PAPR EPD TR+TPDYFL
Sbjct: 3 VFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRPIEPDTTRKTPDYFL 155
>AV418066
Length = 379
Score = 75.5 bits (184), Expect = 1e-14
Identities = 36/90 (40%), Positives = 54/90 (60%)
Frame = +3
Query: 212 GWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCY 271
GWG + RG YTFG D ++F + L LI RAHQ+V DG+ + +++VTIFSAPNYC
Sbjct: 15 GWGENERGVSYTFGADRVKEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCG 194
Query: 272 RCGNMASILEVDDCKGHTFIQFEPAPRRGE 301
N +++ V + +F +P +R +
Sbjct: 195 EFDNAGAMMSVSETLVCSFQVLKPLDKRAK 284
>TC9893 homologue to UP|PP1_MEDVA (P48488) Serine/threonine protein
phosphatase PP1 , partial (33%)
Length = 636
Score = 65.5 bits (158), Expect = 1e-11
Identities = 31/84 (36%), Positives = 52/84 (61%)
Frame = +1
Query: 218 RGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMA 277
RG +TFG D +F + L LI RAHQ+V DG+ + ++++VT+FSAP+YC N
Sbjct: 10 RGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPHYCGEFDNAG 189
Query: 278 SILEVDDCKGHTFIQFEPAPRRGE 301
+++ VDD +F + + ++G+
Sbjct: 190 AMMSVDDTLTCSFQILKSSEKKGK 261
>AV776105
Length = 501
Score = 62.8 bits (151), Expect = 7e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -2
Query: 287 GHTFIQFEPAPRRGEPDVTRRTPDYFL 313
GHTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 500 GHTFIQFEPAPRRGEPDVTRRTPDYFL 420
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,974,026
Number of Sequences: 28460
Number of extensions: 85971
Number of successful extensions: 357
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of query: 313
length of database: 4,897,600
effective HSP length: 90
effective length of query: 223
effective length of database: 2,336,200
effective search space: 520972600
effective search space used: 520972600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0029b.5