BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0029a.7
(411 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19340 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin at... 112 1e-25
TC12257 weakly similar to UP|Q9FHQ4 (Q9FHQ4) Similarity to secre... 28 2.1
AV773560 28 2.8
TC18555 similar to GB|AAP68307.1|31711902|BT008868 At2g33570 {Ar... 28 3.7
TC7924 homologue to UP|CAE53883 (CAE53883) Aquaporin, partial (95%) 28 3.7
TC17027 similar to UP|Q93XA5 (Q93XA5) Homeodomain leucine zipper... 27 6.2
TC13303 weakly similar to UP|Q9LM55 (Q9LM55) F2E2.11, partial (22%) 27 6.2
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 27 6.2
TC17581 similar to GB|AAP81802.1|32441254|BT009684 At1g74380 {Ar... 27 6.2
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 27 6.2
TC16331 similar to GB|AAN64534.1|24797044|BT001143 At5g12410/At5... 27 8.1
>TC19340 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment
subunit precursor, partial (3%)
Length = 511
Score = 112 bits (279), Expect = 1e-25
Identities = 55/57 (96%), Positives = 55/57 (96%)
Frame = +2
Query: 355 FYHVMKTGLLYRGDGSIPKPEGGALLLDEIGDEGSEEEEVETSDEFSEGEVSGSDSE 411
FYHVMKTGLLYRGDGSIP EGGALLLDEIGDEGSEEEEVETSDEFSEGEVSGSDSE
Sbjct: 2 FYHVMKTGLLYRGDGSIPNLEGGALLLDEIGDEGSEEEEVETSDEFSEGEVSGSDSE 172
>TC12257 weakly similar to UP|Q9FHQ4 (Q9FHQ4) Similarity to secretory
protein, partial (49%)
Length = 475
Score = 28.5 bits (62), Expect = 2.1
Identities = 24/78 (30%), Positives = 32/78 (40%), Gaps = 4/78 (5%)
Frame = -1
Query: 322 LSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGSIPKPEGGALLL 381
L L C T + ++ R + D VRH D T L G I G +++
Sbjct: 379 LELDCATARLLTQDSSTRDRAGDAGGAVRHGD------VTAALVEAVGDIVSTYNGVVVV 218
Query: 382 DEIG---DEGSEEE-EVE 395
+G DEG EE EVE
Sbjct: 217 GGVGG*VDEGGEERVEVE 164
>AV773560
Length = 438
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = +1
Query: 366 RGDGSIPKPEGGALLLDEIGDEGSEEEEVETSDEFSEGEVSGSDSE 411
RG+ SIP+ ++ E EG+ +EEVE E +GEV+ E
Sbjct: 241 RGNQSIPRSR--VVVDTESWAEGACQEEVEHKQEHRQGEVASQGEE 372
>TC18555 similar to GB|AAP68307.1|31711902|BT008868 At2g33570 {Arabidopsis
thaliana;}, partial (19%)
Length = 759
Score = 27.7 bits (60), Expect = 3.7
Identities = 22/76 (28%), Positives = 28/76 (35%), Gaps = 18/76 (23%)
Frame = +3
Query: 87 RRYPTLFHEFPHP----RWPSL------------PCFRLTD--TALLLHSQEQSLHNHHE 128
RR T H PHP +PS+ PC L T + H + H+HH
Sbjct: 108 RRTQTPPHHPPHPLLHRHFPSVHPFSLHLLRFRSPCLHLQSHPTPICFHHPKNRHHHHHR 287
Query: 129 NDTVERLSKFLMMTKT 144
N T S + T T
Sbjct: 288 NLTASSCSSTAVTTTT 335
>TC7924 homologue to UP|CAE53883 (CAE53883) Aquaporin, partial (95%)
Length = 1078
Score = 27.7 bits (60), Expect = 3.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 367 GDGSIPKPEGGALLLDEIGDEGSEE 391
GDG + + EGG DE+G+EGS E
Sbjct: 181 GDGDVEEEEGG----DELGNEGSVE 119
>TC17027 similar to UP|Q93XA5 (Q93XA5) Homeodomain leucine zipper protein
HDZ1 (Fragment), partial (34%)
Length = 854
Score = 26.9 bits (58), Expect = 6.2
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Frame = +1
Query: 37 DHIIDKETDLKAASLLKDAINR-----SSTGFLTAKSFSGWQKLLGLTVPVLRFIRRYPT 91
+++ D +D ++++L + N SS+GF +FS Q L + LR +RR+P
Sbjct: 100 ENLKDGSSDSDSSAILNEDNNSPNAAISSSGFFRVTTFSFLQGHLR*SSTALRLLRRHP* 279
Query: 92 LFHEFPHPR-WPSLPCFRLTDTALLLHSQEQSLHNHHE 128
+ F S+ +R T +++L+ S N+H+
Sbjct: 280 VASSFRSSTILHSM*RWRSTISSVLMRLVTFSQMNNHQ 393
>TC13303 weakly similar to UP|Q9LM55 (Q9LM55) F2E2.11, partial (22%)
Length = 541
Score = 26.9 bits (58), Expect = 6.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 17 KLQWRGIAKVRLKWVKNRSLDHIIDKETDLKAASLL 52
KL W G+ W + ++ H++D+E K +S L
Sbjct: 359 KLMWHGLDPRSQIWQRLPNMPHVVDEEETRKGSSRL 466
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 26.9 bits (58), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 382 DEIGDEGSEEEEVETSDEFSEGEVSGSDSE 411
+E +EG EEEE E +E E E D E
Sbjct: 250 EEEEEEGEEEEEEEEEEEEVEAEAEEEDDE 339
>TC17581 similar to GB|AAP81802.1|32441254|BT009684 At1g74380 {Arabidopsis
thaliana;}, partial (35%)
Length = 804
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 113 ALLLHSQEQSLHNHHENDTVERLSKFLMMTKTRTVPLV 150
AL H LH+HH + L+ T +R +P V
Sbjct: 610 ALQHHQSNMYLHHHHHSQQATSLAS*FTTTSSRVLPFV 497
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 26.9 bits (58), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (55%), Gaps = 4/32 (12%)
Frame = +3
Query: 382 DEIGDEGSEEEEVETSDEFSEG----EVSGSD 409
D+ D+G EEE+ + DE EG EV G D
Sbjct: 312 DDDDDDGEEEEDDDDDDEEEEGSEEVEVEGKD 407
>TC16331 similar to GB|AAN64534.1|24797044|BT001143 At5g12410/At5g12410
{Arabidopsis thaliana;}, partial (42%)
Length = 932
Score = 26.6 bits (57), Expect = 8.1
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -1
Query: 88 RYPTLFHEFPHPRWPSLP--CFRLTDTALLLHSQEQSLHNHHEN 129
R P FH++PH + P FR L H Q H H +N
Sbjct: 131 RLPQFFHQYPHSHQQNYPVSAFRPHSLPQLFH---QYRHAHQQN 9
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,760,956
Number of Sequences: 28460
Number of extensions: 119445
Number of successful extensions: 694
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of query: 411
length of database: 4,897,600
effective HSP length: 92
effective length of query: 319
effective length of database: 2,279,280
effective search space: 727090320
effective search space used: 727090320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0029a.7