BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0028b.4
(1177 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19948 weakly similar to UP|Q8DLX6 (Q8DLX6) Tlr0350 protein, pa... 207 4e-56
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 52 4e-07
BP034655 50 2e-06
BP036655 48 1e-05
BP043430 46 3e-05
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 45 5e-05
AI967639 45 9e-05
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 45 9e-05
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 44 1e-04
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 44 2e-04
AV423275 41 0.001
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 41 0.001
AW164001 40 0.002
AV410371 40 0.003
BI420041 39 0.004
BP085186 39 0.005
AV416122 39 0.005
AV767433 39 0.005
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 39 0.005
BF177554 39 0.006
>TC19948 weakly similar to UP|Q8DLX6 (Q8DLX6) Tlr0350 protein, partial (6%)
Length = 612
Score = 207 bits (527), Expect(2) = 4e-56
Identities = 113/144 (78%), Positives = 115/144 (79%), Gaps = 4/144 (2%)
Frame = +2
Query: 1017 IRGENELWLAMVLRSKILVGLKPPQLAAVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI 1076
IRGENELWLAMVLRSKILVGLKPPQLA VCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI
Sbjct: 2 IRGENELWLAMVLRSKILVGLKPPQLAXVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI 181
Query: 1077 GLLGEQRSALLAIQEKHGVTISCCLDTQFCGMVEAWAS----GLTWREIMMDCAMDDGDL 1132
GLLGE RSALLAI G T + W G WREIMMDCAMDDGDL
Sbjct: 182 GLLGEPRSALLAIP---GETTG*LYLAVWIPSSVVWLRHGLLG*HWREIMMDCAMDDGDL 352
Query: 1133 ARLLRRTIDLLAQIPKLADIDPLL 1156
ARLLRRT+DLLAQIPKLADIDPLL
Sbjct: 353 ARLLRRTLDLLAQIPKLADIDPLL 424
Score = 29.3 bits (64), Expect(2) = 4e-56
Identities = 16/22 (72%), Positives = 19/22 (85%), Gaps = 1/22 (4%)
Frame = +3
Query: 1157 QRNARAASDVMDR-PPISELAG 1177
QR+ARAASDVMD+ P +ELAG
Sbjct: 426 QRHARAASDVMDQASP*AELAG 491
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 52.4 bits (124), Expect = 4e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Frame = +3
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
+ D E+E+DDDEEE++ +E++ +DDDDDD +E DD+ DE E
Sbjct: 240 QTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEE 371
Score = 50.1 bits (118), Expect = 2e-06
Identities = 21/43 (48%), Positives = 33/43 (75%)
Frame = +3
Query: 73 DDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
D+ E+EDDD+EE++E E+++ +DDDDDD +E DD+ +E E
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEE 374
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +3
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
D E+D EDEDDDD+++++ + EE EDDDDDD +E +EV EG+
Sbjct: 267 DDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDD-EEEEGSEEVEVEGK 404
Score = 42.4 bits (98), Expect = 4e-04
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = +3
Query: 59 PTSSSLPTFSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEG 114
P P +D E+ ED+D+++++E+E ++++ +DDDD + D+ DD+ +EG
Sbjct: 216 PDGPPKPVQTDNEEE--EDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEG 377
Score = 42.0 bits (97), Expect = 6e-04
Identities = 15/41 (36%), Positives = 31/41 (75%)
Frame = +3
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPD 112
++D +D+DDDD++++ EEE+ +DDD+++ ++E + E D
Sbjct: 285 DEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVEGKD 407
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/48 (43%), Positives = 31/48 (63%)
Frame = +3
Query: 78 EDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREE 125
+ D++EEE++ EEE+ ED+DDDD D+ DD+ +E E D EE
Sbjct: 240 QTDNEEEEDDDEEEDDEDEDDDD---DDDDDDDGEEEEDDDDDDEEEE 374
Score = 37.0 bits (84), Expect = 0.018
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 82 DEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREEFKWQRVE 132
D EEEE ++EE +D+D+DD D+ DD+ +E + D E + VE
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVE 398
Score = 36.2 bits (82), Expect = 0.031
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +3
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAA 103
D GE++ ED+DDDDEEEE EE E E D AA
Sbjct: 324 DDGEEE-EDDDDDDEEEEGSEEVEVEGKDGAKGAA 425
Score = 33.9 bits (76), Expect = 0.15
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDD 99
D +D E+EDDDD++EEE EE E + D
Sbjct: 315 DDDDDGEEEEDDDDDDEEEEGSEEVEVEGKD 407
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Frame = +3
Query: 74 DVEDEDDDDEEEEEYEEEEYEDDD---DDDVAADEYDDEVPDEGE 115
D E D + + + EE EDDD DD+ D+ DD+ D+GE
Sbjct: 201 DPEIYPDGPPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGE 335
>BP034655
Length = 517
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/44 (47%), Positives = 34/44 (76%)
Frame = +1
Query: 68 SDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVP 111
SD E++ E+E++++EEEEE EEEE E++D++D DE +D +P
Sbjct: 133 SDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIP 264
Score = 45.1 bits (105), Expect = 7e-05
Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +1
Query: 66 TFSDAG-EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPD 112
T +D G DD E+E++++EEEEE EEEE E++++++ D+ +DE D
Sbjct: 112 TAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDED 255
Score = 43.1 bits (100), Expect = 3e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 79 DDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFD 118
DDD+EEEEE EEEE E++++++ +E D+E +E E D
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDED 255
Score = 34.7 bits (78), Expect = 0.091
Identities = 14/31 (45%), Positives = 25/31 (80%)
Frame = +1
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVA 102
E++ E+E++++EEE+E ++EE ED+D VA
Sbjct: 178 EEEEEEEEEEEEEEDEEDDEEDEDEDYIPVA 270
>BP036655
Length = 556
Score = 47.8 bits (112), Expect = 1e-05
Identities = 24/54 (44%), Positives = 32/54 (58%)
Frame = -3
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREE 125
E+ + D+ DDDE +E EE E DDDD+ DE DDEV +E E + + EE
Sbjct: 407 EEGLSDDGDDDEVVDEEEEVVEEWSDDDDINDDESDDEVEEESETEIETEKEEE 246
Score = 37.0 bits (84), Expect = 0.018
Identities = 15/42 (35%), Positives = 28/42 (65%), Gaps = 3/42 (7%)
Frame = -3
Query: 72 EDDVEDEDDDDEEEEEYE---EEEYEDDDDDDVAADEYDDEV 110
+DD+ D++ DDE EEE E E E E++++++ + +DE+
Sbjct: 329 DDDINDDESDDEVEEESETEIETEKEEEEEEECGVENVEDEM 204
>BP043430
Length = 493
Score = 46.2 bits (108), Expect = 3e-05
Identities = 24/73 (32%), Positives = 41/73 (55%), Gaps = 5/73 (6%)
Frame = -1
Query: 45 SSTLKFRLSFSFNPPTSSSLPTFSDAGED-----DVEDEDDDDEEEEEYEEEEYEDDDDD 99
SS + S++ PP +P + ++ D +DE +D+E +EE EEEE +DDDD
Sbjct: 457 SSRRRSTTSYAAPPPPKPKIPVKASGDDNEGSGKDNDDEGNDNEVDEEDEEEEDSNDDDD 278
Query: 100 DVAADEYDDEVPD 112
++E++D+ D
Sbjct: 277 GSESEEFNDDEED 239
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 45.4 bits (106), Expect = 5e-05
Identities = 20/40 (50%), Positives = 34/40 (85%), Gaps = 2/40 (5%)
Frame = +1
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDV--AADEYDDE 109
E++VE+E++++EEEEE EEEE E++++++V A+E DDE
Sbjct: 220 EEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDDE 339
Score = 37.4 bits (85), Expect = 0.014
Identities = 17/44 (38%), Positives = 32/44 (72%)
Frame = +1
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
E++VE+E ++ EEEEE EEEE E++++++ +E + E +E +
Sbjct: 208 EEEVEEEVEE-EEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDD 336
Score = 37.0 bits (84), Expect = 0.018
Identities = 18/46 (39%), Positives = 32/46 (69%)
Frame = +1
Query: 73 DDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFD 118
++VE+E +++ EEEE EEEE E++ +++ +E ++EV E E D
Sbjct: 199 EEVEEEVEEEVEEEEEEEEE-EEEGEEEEEEEEEEEEVEAEAEEED 333
Score = 34.3 bits (77), Expect = 0.12
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEA 116
+A + E+ +++ EEE E EEEE E++++ + +E ++E E EA
Sbjct: 178 EAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEA 321
Score = 32.7 bits (73), Expect = 0.35
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +1
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDV 101
E++ +E++++EEEEE E E E++DD+ +
Sbjct: 256 EEEEGEEEEEEEEEEEEVEAEAEEEDDEPI 345
Score = 32.3 bits (72), Expect = 0.45
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 59 PTSSSLPTFSDAGEDDVEDEDDDDEE-EEEYEEE-EYEDDDDDDVAADEYDDEVPDEGEA 116
P SS ++ +E E + EE EEE EEE E E++++++ E ++E +E E
Sbjct: 127 PKSSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEE 306
Query: 117 FDASARREE 125
+A A E+
Sbjct: 307 VEAEAEEED 333
>AI967639
Length = 335
Score = 44.7 bits (104), Expect = 9e-05
Identities = 22/58 (37%), Positives = 36/58 (61%), Gaps = 1/58 (1%)
Frame = +1
Query: 68 SDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVA-ADEYDDEVPDEGEAFDASARRE 124
S G+++ E+ED DE E EEE+ +DDDDDD++ +++ D + P + + RRE
Sbjct: 91 SSEGDEEDEEEDQGDEYNLEDEEEDDDDDDDDDLSISEDSDSDKPRKVKQLPGRTRRE 264
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 44.7 bits (104), Expect = 9e-05
Identities = 21/47 (44%), Positives = 33/47 (69%)
Frame = +2
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
+A + D ED ++DDE+ +E E+E +DDDD++ D+ DDE +EGE
Sbjct: 743 EAEQSDFEDIEEDDEDGDEDEDE--DDDDDEEEEDDDDDDEDDEEGE 877
Score = 44.7 bits (104), Expect = 9e-05
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +2
Query: 67 FSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDD 100
F D EDD + ++D+DE++++ EEEE +DDDD+D
Sbjct: 761 FEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDED 862
Score = 44.3 bits (103), Expect = 1e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 71 GEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDE 113
GE + D +D +E++E+ +E+E EDDDDD+ D+ DD+ DE
Sbjct: 740 GEAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDE 868
Score = 42.7 bits (99), Expect = 3e-04
Identities = 21/56 (37%), Positives = 36/56 (63%)
Frame = +2
Query: 68 SDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARR 123
SD + + +DED D++E+E+ +++E E+DDDDD DE D+E + ++ S R
Sbjct: 755 SDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDD---DEDDEEGEGKSKSKSGSKAR 913
Score = 37.7 bits (86), Expect = 0.011
Identities = 16/49 (32%), Positives = 30/49 (60%)
Frame = +2
Query: 74 DVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASAR 122
+ E D +D EE++ + +E ED+DDDD +E DD+ ++ E + ++
Sbjct: 743 EAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSK 889
Score = 29.6 bits (65), Expect = 2.9
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 82 DEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREEFKWQRVEKLCNEVR 139
+ E+ ++E+ E EDD+D D DE DD+ +E + D EE + + K ++ R
Sbjct: 743 EAEQSDFEDIE-EDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKSKSGSKAR 913
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 43.9 bits (102), Expect = 1e-04
Identities = 20/43 (46%), Positives = 31/43 (71%), Gaps = 2/43 (4%)
Frame = -2
Query: 69 DAGEDDVEDEDDDDEEE--EEYEEEEYEDDDDDDVAADEYDDE 109
D +DD +DEDDD+E++ E+ EEE E++D++D DE D+E
Sbjct: 404 DQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEE 276
Score = 42.4 bits (98), Expect = 4e-04
Identities = 17/54 (31%), Positives = 36/54 (66%)
Frame = -2
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREE 125
E++ EDE+D+D E++E ++++ EDDD++D ++ ++E +E + D E+
Sbjct: 443 EENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEED 282
Score = 42.0 bits (97), Expect = 6e-04
Identities = 16/47 (34%), Positives = 33/47 (70%)
Frame = -2
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
D ++D ED++DDD+++E+ +EE+ +D+++ +E D+E +E E
Sbjct: 428 DEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDE 288
Score = 40.4 bits (93), Expect = 0.002
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = -2
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREEFKWQRV 131
E+ ++ED+D E++E+ ++++ +DD++DD DE ++ V +E + +E Q
Sbjct: 440 ENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEEALQPP 261
Query: 132 EK 133
+K
Sbjct: 260 KK 255
Score = 37.7 bits (86), Expect = 0.011
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -2
Query: 55 SFNPPTSSSLPTFSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEG 114
S N S P E+ +D+E+E+ ++E+ +DDD+DD DE DD DE
Sbjct: 506 SNNKSNSKKAPEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDDEDD---DEEDDGGEDEE 336
Query: 115 E 115
E
Sbjct: 335 E 333
Score = 37.4 bits (85), Expect = 0.014
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = -2
Query: 70 AGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREE 125
AG E+ +D+++E+ E +E++ +DD+DDD D +DE + E D E+
Sbjct: 458 AGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEED 291
Score = 34.7 bits (78), Expect = 0.091
Identities = 17/37 (45%), Positives = 25/37 (66%), Gaps = 3/37 (8%)
Frame = -2
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYE---DDDDDDVA 102
D +DD ED+ +DEEEE EEE+ E +D++D+ A
Sbjct: 383 DDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEEA 273
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 43.5 bits (101), Expect = 2e-04
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 20/69 (28%)
Frame = +2
Query: 69 DAGEDDVEDEDDDDE--------EEEEYEEEEY------------EDDDDDDVAADEYDD 108
D GEDD DEDDDD+ ++EE EEEE +DDDDDD DE ++
Sbjct: 41 DDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDDDDDDDDDDDEEEE 220
Query: 109 EVPDEGEAF 117
E D G +
Sbjct: 221 EEEDLGTEY 247
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 16/70 (22%)
Frame = +2
Query: 71 GEDDVEDEDDDDEEEEEYEEEEY-------------EDDD---DDDVAADEYDDEVPDEG 114
G+ D +D+DDDD++EEE EEE+ ED++ D + DE DD D+G
Sbjct: 167 GDPDDDDDDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDEGDDNDNDDG 346
Query: 115 EAFDASARRE 124
E ++R+
Sbjct: 347 EKAGVPSKRK 376
Score = 34.3 bits (77), Expect = 0.12
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 79 DDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
D+DD+++ E ++ + +DDDD D+ DDE +E E
Sbjct: 26 DEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEE 136
Score = 32.3 bits (72), Expect = 0.45
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 23/70 (32%)
Frame = +2
Query: 72 EDDVEDEDDDDEEEEEYEE-----------------------EEYEDDDDDDVAADEYDD 108
+DD +D+DDDDEEEEE E+ E ED+ DD+ D
Sbjct: 176 DDDDDDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDEGDDNDNDDGEKA 355
Query: 109 EVPDEGEAFD 118
VP + + D
Sbjct: 356 GVPSKRKRSD 385
Score = 28.1 bits (61), Expect = 8.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 90 EEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREE 125
+E+ +DD +DD ++ DD+ P G+ D EE
Sbjct: 26 DEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEE 133
>AV423275
Length = 405
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Frame = +2
Query: 2 AFVATTNTPPLILSHSLRPPRRYPSFSLLPIPTTTLPLSLRSLSSTLKFRLSFSFNPPTS 61
AF N+PP++ PR + SL P S S S +FR+ F P
Sbjct: 47 AFPPPFNSPPVL-------PRAHTCHSLAPARVVQ---SSPSSISRFEFRV---FQQPCV 187
Query: 62 SSLPTFSDAGEDD------------VEDEDDDDEEEEEYEEEEYEDDDDDD--VAADEYD 107
SL G + D+ +EEEE + EY DDDDDD V E+D
Sbjct: 188 KSLRAVRGGGVVTAVAKKKGRGGVGIVGVDEGFDEEEEGDGIEYYDDDDDDEEVEEGEFD 367
Query: 108 DEVPDEGE 115
D+ D+GE
Sbjct: 368 DDGGDDGE 391
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/57 (42%), Positives = 30/57 (52%)
Frame = -2
Query: 57 NPPTSSSLPTFSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDE 113
NP AGED+ D +EEEEE EE+ E+DDD D DE D+E +E
Sbjct: 447 NPERGEDETVIDGAGEDN--DRAVAEEEEEEPGEEDGEEDDDGDGVPDEGDEEDEEE 283
Score = 34.7 bits (78), Expect = 0.091
Identities = 23/61 (37%), Positives = 29/61 (46%), Gaps = 4/61 (6%)
Frame = -2
Query: 69 DAGED----DVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARRE 124
+ GED D ED+D EE EEE E+D ++D D DE +E E D E
Sbjct: 441 ERGEDETVIDGAGEDNDRAVAEEEEEEPGEEDGEEDDDGDGVPDEGDEEDEEEDHGVVAE 262
Query: 125 E 125
E
Sbjct: 261 E 259
Score = 28.5 bits (62), Expect = 6.5
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDD-DVAADEYDDEVPDEGEAFDASARREE 125
+ GE+D E++DD D +E +EE D+++D V A+E + V F R E
Sbjct: 363 EPGEEDGEEDDDGDGVPDEGDEE---DEEEDHGVVAEEVAEVVLHAEGGFAEGVRAGE 199
>AW164001
Length = 447
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +1
Query: 68 SDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVP 111
SD D V ++DD+ +EE +E+++DDDDDD D+ DD+ P
Sbjct: 13 SDVVGDSVNKQNDDEVYKEEDVDEDFDDDDDDD--DDDDDDDEP 138
Score = 36.2 bits (82), Expect = 0.031
Identities = 15/42 (35%), Positives = 29/42 (68%)
Frame = +1
Query: 72 EDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDE 113
+D+V E+D DE+ ++ ++++ +DDDDD+ A + D+ DE
Sbjct: 49 DDEVYKEEDVDEDFDDDDDDDDDDDDDDEPATLGFVDKPKDE 174
Score = 30.4 bits (67), Expect = 1.7
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = +1
Query: 71 GEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDE 113
G DV + + + ++E +EE D+D DD D+ DD+ DE
Sbjct: 7 GTSDVVGDSVNKQNDDEVYKEEDVDEDFDDDDDDDDDDDDDDE 135
>AV410371
Length = 347
Score = 39.7 bits (91), Expect = 0.003
Identities = 21/54 (38%), Positives = 32/54 (58%)
Frame = +3
Query: 55 SFNPPTSSSLPTFSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDD 108
S NP S+ + D ED VED+DDD +E+ Y+ + Y DD+D+ D+Y +
Sbjct: 189 SNNPNGSNFDNSCQDDDEDMVEDDDDDADEDPGYDTDLYY--DDEDIFEDDYSN 344
>BI420041
Length = 452
Score = 39.3 bits (90), Expect = 0.004
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Frame = +2
Query: 12 LILSHSLRPPRRYPSFSLLPIPTTTLPLSLRSLSSTLKFRLSFS-FNPPTSSSLPTFSDA 70
L+ + SL+P R PS L+ I T+T S S+ F FS F + P
Sbjct: 5 LVKASSLKP-WRIPSPPLINITTSTATTFYFSPRSSKNFSFPFSTFQVQHTQLKPLILHG 181
Query: 71 GEDDVEDEDD------------DDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFD 118
+ + D + D+EE++E++ EE +D+D+D DEY D+ E E F+
Sbjct: 182 KKRNSSDSEPVLEPTIVQEVSMDEEEDDEFDYEEPLNDEDED--GDEYYDDDEQEEEEFE 355
Score = 37.7 bits (86), Expect = 0.011
Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
Frame = +2
Query: 72 EDDVEDEDDDDEE---EEEYEEEEYEDDDDDDV 101
E+ + DED+D +E ++E EEEE+ED+D+D V
Sbjct: 278 EEPLNDEDEDGDEYYDDDEQEEEEFEDEDEDSV 376
Score = 33.1 bits (74), Expect = 0.26
Identities = 17/37 (45%), Positives = 23/37 (61%)
Frame = +2
Query: 68 SDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAAD 104
+D ED E DDD++EEEE+E+ ED+D A D
Sbjct: 290 NDEDEDGDEYYDDDEQEEEEFED---EDEDSVPYAGD 391
>BP085186
Length = 388
Score = 38.9 bits (89), Expect = 0.005
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -1
Query: 71 GEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
GE + E+E++++EEEEE EEEE E + +++ +E + EGE
Sbjct: 271 GEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNTQEGEGE 137
Score = 36.6 bits (83), Expect = 0.024
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = -1
Query: 69 DAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGE 115
D + + +E++++EEEEE EEEE E++ + + +E ++ EGE
Sbjct: 283 DNADGEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNTQEGE 143
Score = 34.7 bits (78), Expect = 0.091
Identities = 18/52 (34%), Positives = 32/52 (60%), Gaps = 5/52 (9%)
Frame = -1
Query: 65 PTFSDAGEDDVEDEDDDDEEEEEYEEE-----EYEDDDDDDVAADEYDDEVP 111
P +D ++ E+E++++EEEEE EEE E E +++++V E + E P
Sbjct: 286 PDNADGEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNTQEGEGENP 131
>AV416122
Length = 414
Score = 38.9 bits (89), Expect = 0.005
Identities = 28/101 (27%), Positives = 47/101 (45%), Gaps = 4/101 (3%)
Frame = +3
Query: 20 PPRRYPSFSLLPIPTTTLPLSLRSLSSTLKFRLSFSFNPPTSSSLPTFSDAGEDDVEDED 79
P +R+P +P P P L++T + + N ++ D E +
Sbjct: 96 PSKRHP----VPDPQEQPPTKAPKLAATPEPNPDSNDNNNNHPAVSATDDCSSQPKEAAN 263
Query: 80 DDDEEEE--EYEEEEYEDDDDDDVAADEYDDEVPDE--GEA 116
DD+E + ++E EE EDD++D DE +D+ D+ GEA
Sbjct: 264 DDNEPDNDVQFEGEEEEDDEEDKEEEDEEEDDEDDDSNGEA 386
Score = 38.1 bits (87), Expect = 0.008
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Frame = +3
Query: 72 EDDVE---DEDDDDEEEEEYEEEEYEDDDDDDVAADEYD 107
++DV+ +E++DDEE++E E+EE +D+DDD E D
Sbjct: 279 DNDVQFEGEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVD 395
Score = 34.3 bits (77), Expect = 0.12
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Frame = +3
Query: 69 DAGEDDVEDEDD-------DDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEG 114
+A DD E ++D ++++EE+ EEE+ E+DD+DD + E + + +G
Sbjct: 252 EAANDDNEPDNDVQFEGEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVDRKGKG 410
>AV767433
Length = 383
Score = 38.9 bits (89), Expect = 0.005
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +3
Query: 244 QVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPK 303
Q+L+ T LR+ V N + S L+ V V++LDE +L D+ E+I+ PK
Sbjct: 36 QILVATPGRLRD----HVENTAGFASRLMGVKVLILDEADHLLDMGFRKDIEKIIAAVPK 203
Query: 304 EVQLICLSATVANPDEL 320
+ Q + SATV P+E+
Sbjct: 204 QRQTLLFSATV--PEEV 248
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 38.9 bits (89), Expect = 0.005
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Frame = +3
Query: 65 PTFSDAGEDDVEDEDDDDEEEEEYEEEEY--------EDDDDDDVAADEYD--DEVPDEG 114
PT D+ DD E ED++D+++++ ++E + D DD++ D+YD ++ DE
Sbjct: 51 PTDDDSDPDDAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMSHDDYDSASDIDDED 230
Query: 115 EAF 117
F
Sbjct: 231 ADF 239
Score = 30.4 bits (67), Expect = 1.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 77 DEDDDDEEEEEYEEEEYEDDDDDD 100
DEDDDD +E E + ED DD+D
Sbjct: 300 DEDDDDSQELESASSDDEDFDDND 371
Score = 29.6 bits (65), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 75 VEDEDDDDEEEEEYEEEEYEDDDDDD 100
V D D+DD++ +E E +D+D DD
Sbjct: 288 VGDRDEDDDDSQELESASSDDEDFDD 365
>BF177554
Length = 246
Score = 38.5 bits (88), Expect = 0.006
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 66 TFSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDAS 120
T ED E+E + EEEE EEEE E+++++D + D + P+E E D S
Sbjct: 10 TSEQQDEDSCEEEAGESSEEEEEEEEEGEEEEEEDDGPGDRDAQ-PEEEEEEDFS 171
Score = 35.0 bits (79), Expect = 0.070
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 76 EDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREEF 126
E +D+D EEE E E E++++++ +E +D+ P + +A E+F
Sbjct: 16 EQQDEDSCEEEAGESSEEEEEEEEEGEEEEEEDDGPGDRDAQPEEEEEEDF 168
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,728,282
Number of Sequences: 28460
Number of extensions: 258556
Number of successful extensions: 4289
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of query: 1177
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1077
effective length of database: 2,051,600
effective search space: 2209573200
effective search space used: 2209573200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0028b.4