BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0027.9
(1611 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767121 115 7e-26
AV780705 89 4e-18
AV780221 77 2e-14
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 72 7e-13
BP060613 71 1e-12
BP085058 68 1e-11
AV411435 55 1e-07
TC18710 51 1e-06
AV428268 48 1e-05
AV412895 47 3e-05
CB826728 37 3e-05
BP041113 45 9e-05
BP068806 39 0.006
AV414139 38 0.011
AV426428 38 0.014
TC12829 31 0.023
TC13572 36 0.055
AU089037 34 0.21
TC12798 similar to UP|O39876 (O39876) HBc antigen, partial (8%) 34 0.21
BP076564 33 0.46
>AV767121
Length = 525
Score = 115 bits (287), Expect = 7e-26
Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 5/171 (2%)
Frame = +2
Query: 1284 LSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRK 1343
LS WK T+SF GR+ L QS L +LP + + +PIGV + RL RNF+WG + + K
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 1344 CHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGL 1403
+ W +C PK+ GGLG DL T N+A + K W L + DSLW +V++A+
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ------- 340
Query: 1404 RAPPLPKPPDSPTWKGICKAWP-----IMEKGVKWTLGNGIKVSFWRDNWI 1449
P S W I P G+K +G G + FW ++W+
Sbjct: 341 ---PDHYSCGSSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWL 484
>AV780705
Length = 524
Score = 89.4 bits (220), Expect = 4e-18
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Frame = -2
Query: 1256 GMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQT 1315
G YLG+P + + ++ +KV++KL GWK + L+ AG+ L ++ + ++P+Y M
Sbjct: 490 GHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTI 311
Query: 1316 TPIPIGVCQEIERLCRNFIWGSTADHRKCHLISWDTICS-PKDQGGLGFCDLRTINQAYM 1374
P C + L +F W S + + + T K++GG+GF DLRT N A++
Sbjct: 310 VHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNLAFL 131
Query: 1375 AKLAWNILADKDSLWTQVLKAKYKFNPGL 1403
A+ AW +L + ++LW +V+K+ Y P L
Sbjct: 130 ARQAWRVLTNPEALWVRVMKSLYFPTPAL 44
>AV780221
Length = 461
Score = 77.4 bits (189), Expect = 2e-14
Identities = 45/151 (29%), Positives = 72/151 (46%), Gaps = 1/151 (0%)
Frame = +3
Query: 1300 LTQSCLLSLPAYVMQTTPIPIG-VCQEIERLCRNFIWGSTADHRKCHLISWDTICSPKDQ 1358
L +S L++LP + + +P G + F +K + W T+C PKD+
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188
Query: 1359 GGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLRAPPLPKPPDSPTWK 1418
GGLG +L N+A + K W +L ++D LW +VL KYK A S ++
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKYKNAIPQSASSWWNDLHSTCFE 368
Query: 1419 GICKAWPIMEKGVKWTLGNGIKVSFWRDNWI 1449
W M++G+ +G G +V FW +NW+
Sbjct: 369 DGGGGW--MQRGLCRRIGEGTEVKFWNENWL 455
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 72.0 bits (175), Expect = 7e-13
Identities = 44/125 (35%), Positives = 68/125 (54%)
Frame = -3
Query: 1184 ISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFFSKNVHDGKADQI 1243
ISHL FAD++++F+ ++ +I+ +LH F SG +P KS VF V + +QI
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFIL--VKETTKNQI 200
Query: 1244 VHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLSFAGRVSLTQS 1303
+ LG ++ LGVP L + L + L+D+ KL W +LS+AGR+ L S
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 1304 CLLSL 1308
L S+
Sbjct: 19 ILFSM 5
>BP060613
Length = 378
Score = 71.2 bits (173), Expect = 1e-12
Identities = 39/105 (37%), Positives = 53/105 (50%)
Frame = +1
Query: 1334 IWGSTADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVL 1393
+W S+ R H WD + KD+GGLGF D NQA +AK AW IL + D+LW Q+L
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 1394 KAKYKFNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNG 1438
KA Y F + S W + ++ K +W LG+G
Sbjct: 223 KALY-FPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSG 354
>BP085058
Length = 452
Score = 67.8 bits (164), Expect = 1e-11
Identities = 39/123 (31%), Positives = 66/123 (52%)
Frame = +2
Query: 1241 DQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLSFAGRVSL 1300
D++V I T N+G Y+ P+ + KE+F F +D+V +L+ K L+ R++L
Sbjct: 86 DRMVSITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTL 265
Query: 1301 TQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKCHLISWDTICSPKDQGG 1360
+ L ++ YVMQ +P +C +I + R+F+W + L++W+TI S K G
Sbjct: 266 AKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVWENV---NGIPLVAWETIQSRKSMVG 436
Query: 1361 LGF 1363
L F
Sbjct: 437 LIF 445
>AV411435
Length = 426
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Frame = +3
Query: 1504 PPHLERGEDEPFWGLSPDGAFSLNSVF------------LILLPPPPVSYEKTFEHVWNF 1551
P + ED FW P G +S+ S + L P S+ + +W
Sbjct: 15 PFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSF--LWHTIWGA 188
Query: 1552 RGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ P + ++ LW+ A+ + + +RNM D CP C + E + HA+ CE + VW
Sbjct: 189 QVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW 365
>TC18710
Length = 843
Score = 51.2 bits (121), Expect = 1e-06
Identities = 26/72 (36%), Positives = 41/72 (56%)
Frame = +2
Query: 1099 ATLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIER 1158
++L FGF ++++I +S S G P RG+RQGDP SPYLF+ +E
Sbjct: 620 SSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEV 799
Query: 1159 LALTIKDACSDG 1170
L+L I+++ + G
Sbjct: 800 LSLLIQNSFNMG 835
>AV428268
Length = 429
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = +3
Query: 1524 FSLNSVFLILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYD 1583
+S+ S + L ++ F+ +W+ + P A A+ WK R+ T +R +
Sbjct: 6 YSVKSAYDFLHGCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVIS 185
Query: 1584 STCPRCLEEEESVMHAIRDCECVKHVWN 1611
+ CP C +EES H + C V +W+
Sbjct: 186 NVCPLCSLDEESTDHLLFSCPIV*RIWS 269
>AV412895
Length = 405
Score = 46.6 bits (109), Expect = 3e-05
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +1
Query: 1522 GAFSLNSVFLILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMT 1581
G FS+NS F+ L + F +W P +A +W+ GR+ T +KR +
Sbjct: 4 GGFSVNSSFVFL*DQYLEEPDPVFN*IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVI 183
Query: 1582 Y---DSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ D+ CP C EES H + C +W
Sbjct: 184 HNALDAICPLCGLAEESGSHLLFSCAESMLIW 279
>CB826728
Length = 509
Score = 37.0 bits (84), Expect(2) = 3e-05
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Frame = +1
Query: 1515 FWGLSPDGAFSLNSVFLI-------LLP---PPPVSYEKTFEHVWNFRGPPRAQAVLWKT 1564
FW S DG +S S + LLP P ++ VW+ PR + V+W+
Sbjct: 211 FWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMWRA 390
Query: 1565 AHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDC 1603
G L +R + D + P E+E+ +H + C
Sbjct: 391 CAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507
Score = 28.9 bits (63), Expect(2) = 3e-05
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 1446 DNWIPNMGPITSFMPDVHSEAWNANLP---VAAFLENGDWNWNSLSQLLPDDVCRRIRAL 1502
D W+PN P+ V+ E +L VA +ENG WN N +S + A+
Sbjct: 15 DAWLPNSAPL------VYCEDLFVDLQLKKVADLIENGRWNENLVSMVFSPSTTAVFLAV 176
Query: 1503 NPPHLERGED 1512
+ P L+ ED
Sbjct: 177 SLP-LQSYED 203
>BP041113
Length = 503
Score = 45.1 bits (105), Expect = 9e-05
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Frame = +1
Query: 1443 FWRDNWIPNMGPITSFMPDVHSEAWNANLPV-AAFLENGDWN---WNSLSQLLPDDVCRR 1498
FW ++WI MG + D + +N + LE G WN W V R
Sbjct: 1 FWTEDWI-GMGTLR----DRYYRLFNLSKEKRCCILECGGWNHGVWTWKLSWRRALVGRE 165
Query: 1499 I-------RALNPPHLERGEDEPFWGLSPDGAFSLNSVFLILLPPPPVSYEKTFEHVWNF 1551
+ + L+ L G ++ W P G +++NS + L P + F +W
Sbjct: 166 LGWLELMMKDLSGVCLSEGVEDK-WLWLPGGTYTVNSAYSFLQAPTLADTDPIFATIWRT 342
Query: 1552 RGPPRAQAVLWKTAHGRLLTNKERVKRNMTYD---STCPRCLEEEESVMHAI 1600
P +A W+ GRL T +KR + D + C C E ESV H +
Sbjct: 343 VAPS-VKAFAWRCLLGRLPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTHLL 495
>BP068806
Length = 418
Score = 38.9 bits (89), Expect = 0.006
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 1554 PPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
P + + +W G + N R + + PRC + E + H +RDC + VW
Sbjct: 153 PEKIRVWVWFIMQGAIQVNSFRFRCKLATSPAGPRCQHQFEDIWHCLRDCRIARDVW 323
>AV414139
Length = 309
Score = 38.1 bits (87), Expect = 0.011
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = -2
Query: 1479 NGDWNWN-----SLSQLLPDDVCRRIRALNPPHLERG-EDEPFWGLSPDGAFSLNSVFLI 1532
NG W W LS I+AL L++G ED W L + +++ S + +
Sbjct: 284 NGVWEWEFRWRRELSVREQRQEADLIQALAGVCLQQGTEDRWKWTLDTEDIYTVRSAY*L 105
Query: 1533 LLPPPPVSYEKTFEHVWNFRGPPRAQAVLWK 1563
LL P S + +E VW P A A +W+
Sbjct: 104 LLDPIADSDSEVYEKVWVGIAPSNANAFVWR 12
>AV426428
Length = 413
Score = 37.7 bits (86), Expect = 0.014
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 1548 VWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVK 1607
+W PR W+ G L R + D CPRCL ++ HA+ C V
Sbjct: 54 LWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VH 233
Query: 1608 HVW 1610
+W
Sbjct: 234 PIW 242
>TC12829
Length = 448
Score = 30.8 bits (68), Expect(2) = 0.023
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 1295 AGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNF 1333
AGR L +S ++P Y+M +P +C +IE + F
Sbjct: 270 AGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKF 386
Score = 25.0 bits (53), Expect(2) = 0.023
Identities = 7/22 (31%), Positives = 10/22 (44%)
Frame = +1
Query: 1332 NFIWGSTADHRKCHLISWDTIC 1353
+FIW R H + W +C
Sbjct: 382 SFIWSGDVSRRSIHWLGWKKLC 447
>TC13572
Length = 534
Score = 35.8 bits (81), Expect = 0.055
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Frame = -3
Query: 1428 EKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHSEAWN------ANLPVAAFLENGD 1481
E+GV L +G FW +NW + + + +N A++ G
Sbjct: 373 EEGVHKVLRSGNHTRFWLENWTG-----VGILREKYYRLYNLSKLKWASIDECGGWSQGV 209
Query: 1482 WNWN------------SLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDGAFSLNSV 1529
WNW+ Q L D+ R P L D+ W S DG++S+NS
Sbjct: 208 WNWDFRWRRPLAGRELDWLQALSLDIVR------VPLLAGVPDKWVWKPSEDGSYSVNSA 47
Query: 1530 FLIL-----LPPPPV 1539
F+ L PP P+
Sbjct: 46 FIFLQVPSEQPPNPI 2
>AU089037
Length = 245
Score = 33.9 bits (76), Expect = 0.21
Identities = 20/77 (25%), Positives = 30/77 (37%), Gaps = 3/77 (3%)
Frame = -1
Query: 1530 FLILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDST---C 1586
+ +LL V F+ +W P A + W+ R+ T +R + S C
Sbjct: 245 YAVLLGSIQVPSSDIFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALC 66
Query: 1587 PRCLEEEESVMHAIRDC 1603
P C + EES H C
Sbjct: 65 PMCSQCEESSSHLFFSC 15
>TC12798 similar to UP|O39876 (O39876) HBc antigen, partial (8%)
Length = 735
Score = 33.9 bits (76), Expect = 0.21
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Frame = -1
Query: 1501 ALNPPHLERGEDEPFWGLSPDGAFSLNSVFLILLPPPPVSYEKTFEHVWNFRGPPRAQAV 1560
ALNPP ER +D DG + +V L P PP + E T R R +
Sbjct: 681 ALNPPEAERADD-----TDDDGEETFETVLLAEPPLPPTAEEPTSPRRRRSRSRRRQCRL 517
Query: 1561 ---------LWKTAH-GRLLTNKERVKRNMTYDSTCPRC 1589
L +T H GR T R R + D+T RC
Sbjct: 516 S*RLLRNFHLTRTRHSGRPQTRTHRRGRRLPSDTTTRRC 400
>BP076564
Length = 371
Score = 32.7 bits (73), Expect = 0.46
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 1566 HGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVWN 1611
H L N R +M C RC + ++H ++DC + VWN
Sbjct: 101 HQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVWN 238
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.341 0.150 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,477,908
Number of Sequences: 28460
Number of extensions: 617695
Number of successful extensions: 5179
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 4930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5147
length of query: 1611
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1508
effective length of database: 1,966,220
effective search space: 2965059760
effective search space used: 2965059760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0027.9