BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.7
(303 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana ... 132 8e-47
AV417038 79 1e-15
AV428777 52 2e-13
AV417594 62 2e-10
BP063609 30 0.39
TC13769 weakly similar to GB|AAM19768.1|20453045|AY094388 AT3g56... 30 0.39
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 30 0.39
TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, part... 30 0.66
TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Ar... 29 0.86
TC15505 gb|M82900.1|TOBCP16SRD Nicotiana plumbaginifolia 16S rRN... 29 0.86
TC9092 similar to UP|O82700 (O82700) MtN6 protein, partial (89%) 28 1.5
TC9115 similar to PIR|T00425|T00425 photolyase/blue-light recept... 28 1.9
TC14215 similar to UP|Q9FYM1 (Q9FYM1) F21J9.8, partial (8%) 28 1.9
BP062862 28 1.9
TC19664 similar to UP|Q9ZSQ7 (Q9ZSQ7) Protein phosphatase 2C hom... 28 1.9
BP038038 28 2.5
TC10840 homologue to UP|NDK1_SOYBN (Q39839) Nucleoside diphospha... 28 2.5
NP459472 RAB7A [Lotus japonicus] 28 2.5
TC9995 similar to PIR|T51820|T51820 F-actin capping protein alph... 27 3.3
AW720005 27 4.3
>TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
subunit 26S ribosomal RNA gene, partial sequence,
complete
Length = 6006
Score = 132 bits (331), Expect(2) = 8e-47
Identities = 54/60 (90%), Positives = 57/60 (95%)
Frame = -1
Query: 244 GKERIASKRDEPTGEHQRQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
G+ERIA +RDEPTG HQR+TDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTC PMDPR
Sbjct: 882 GQERIAGRRDEPTGAHQRRTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 703
Score = 104 bits (259), Expect = 2e-23
Identities = 49/57 (85%), Positives = 51/57 (88%)
Frame = -3
Query: 115 DNDSSAGSPTETLLRLLLPLNDKVQWTSHNVASSEPPTLPQSEHFTGPFNRLRSRSL 171
DND SAGSPTETLLRLLLPLNDKVQWTSHNVA SEPPT PQSEHFTGPFNR R++
Sbjct: 1975 DNDPSAGSPTETLLRLLLPLNDKVQWTSHNVAGSEPPTSPQSEHFTGPFNR*ERRAV 1805
Score = 102 bits (255), Expect = 6e-23
Identities = 49/66 (74%), Positives = 53/66 (80%)
Frame = -1
Query: 13 VSKHAETARAAIHNHGSGHNGALTLSGAPFQGTWARSATEDASLDYNSDALGDRFSWWAL 72
+ K ++ A GSGHNGALTLSGAPFQGTWARSATEDAS DYNSDALGDRFSWWAL
Sbjct: 2868 IPKQPDSPTAPRGATGSGHNGALTLSGAPFQGTWARSATEDASPDYNSDALGDRFSWWAL 2689
Query: 73 PGRRAL 78
PG A+
Sbjct: 2688 PGSLAV 2671
Score = 88.6 bits (218), Expect = 1e-18
Identities = 45/68 (66%), Positives = 51/68 (74%)
Frame = -2
Query: 163 FNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSSQSVNPYYVWTCCSSFINPRISPLTM 222
F+RLRSRSLTELT QIAPP KNGHAPP IESRKSSQSVNPYYVWT S ++S
Sbjct: 1514 FSRLRSRSLTELTRQIAPPTKNGHAPPPIESRKSSQSVNPYYVWTW*VSPC*VKLSRRLH 1335
Query: 223 KYECPQLS 230
+ CP ++
Sbjct: 1334 SWWCPSVN 1311
Score = 78.6 bits (192), Expect = 1e-15
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = -1
Query: 73 PGRRALNLMASGATCVQRLNGSRDSAIHTKYRISLRSSSMRD 114
PGRRAL+LM SGATCVQRL+GSRDSAIHTKYRISLRSSSMR+
Sbjct: 2361 PGRRALDLMVSGATCVQRLDGSRDSAIHTKYRISLRSSSMRE 2236
Score = 71.6 bits (174), Expect(2) = 8e-47
Identities = 33/38 (86%), Positives = 35/38 (91%)
Frame = -2
Query: 209 CSSFINPRISPLTMKYECPQLSLSIITPMPKAKTIGKE 246
CSSFINPRISPLTMKYECP+LSL IITP+PKA TIG E
Sbjct: 1100 CSSFINPRISPLTMKYECPRLSLLIITPIPKANTIGPE 987
Score = 58.5 bits (140), Expect = 1e-09
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -3
Query: 1 MGSPQADARSTQVSKHAETARAAIHNHGSGHNGALTLSGA 40
MGSPQADARSTQV KHAETARAAIHNHG + +++ + A
Sbjct: 3229 MGSPQADARSTQVPKHAETARAAIHNHGDDVSTSISTAWA 3110
>AV417038
Length = 240
Score = 78.6 bits (192), Expect = 1e-15
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = -3
Query: 73 PGRRALNLMASGATCVQRLNGSRDSAIHTKYRISLRSSSMRD 114
PGRRAL+LM SGATCVQRL+GSRDSAIHTKYRISLRSSSMR+
Sbjct: 139 PGRRALDLMVSGATCVQRLDGSRDSAIHTKYRISLRSSSMRE 14
>AV428777
Length = 329
Score = 52.0 bits (123), Expect(2) = 2e-13
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -1
Query: 209 CSSFINPRISPLTMKYECPQLSLSIITPMPKAKTI 243
CSSFI+PRISPL +K+ C +LSL II P+PKA TI
Sbjct: 296 CSSFISPRISPLCIKFVCRRLSLLIIAPIPKADTI 192
Score = 39.7 bits (91), Expect(2) = 2e-13
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -3
Query: 244 GKERIASKRDEPTGEHQRQTDRPNPR 269
G+ERIA +R EP+G HQR+T PNPR
Sbjct: 78 GQERIAGRRYEPSGAHQRRTVGPNPR 1
>AV417594
Length = 421
Score = 61.6 bits (148), Expect = 2e-10
Identities = 30/39 (76%), Positives = 32/39 (81%)
Frame = -1
Query: 163 FNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSSQSVN 201
F+R RSRSLTELT QI PP KNGHAPP +SRKS QSVN
Sbjct: 307 FSRTRSRSLTELTRQITPPTKNGHAPPTKKSRKSFQSVN 191
>BP063609
Length = 440
Score = 30.4 bits (67), Expect = 0.39
Identities = 26/106 (24%), Positives = 49/106 (45%)
Frame = +2
Query: 68 SWWALPGRRALNLMASGATCVQRLNGSRDSAIHTKYRISLRSSSMRDDNDSSAGSPTETL 127
SW + PG+ A LM+ +QR + S + + +++ ++ S + T T+
Sbjct: 101 SWLSFPGKPAA-LMSLSLQSLQRSPAAIASLLAFR-KLNAAVPALTLSPFGS*STSTTTI 274
Query: 128 LRLLLPLNDKVQWTSHNVASSEPPTLPQSEHFTGPFNRLRSRSLTE 173
L P+++ V+ ++H+V S + P S + N S LTE
Sbjct: 275 SXNLQPISNPVRASAHSVRRSTRKSCPLSSRLSAQANPKLSHGLTE 412
>TC13769 weakly similar to GB|AAM19768.1|20453045|AY094388
AT3g56200/F18O21_160 {Arabidopsis thaliana;}, partial
(20%)
Length = 438
Score = 30.4 bits (67), Expect = 0.39
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 31 HNGAL-TLSGAPFQGTWARSATEDASLDYNSDALGDRFSWWALPGRRALNLMA 82
H+G T +G +G WA + ASL YN LG +FS + G L ++A
Sbjct: 272 HSGETKTYAGVMREGVWAARSFSRASLCYNHQPLGVKFST*SSSGMCYLGIIA 430
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 30.4 bits (67), Expect = 0.39
Identities = 31/99 (31%), Positives = 37/99 (37%)
Frame = +3
Query: 147 SSEPPTLPQSEHFTGPFNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSSQSVNPYYVW 206
SS PT P S P S + T Q +PPN +PP +RK+S S P Y
Sbjct: 270 SSTAPTTPPS-----PSPPSNSPTSTSPPPQPSPPNSTSPSPPQTPTRKTSHS--PTY-- 422
Query: 207 TCCSSFINPRISPLTMKYECPQLSLSIITPMPKAKTIGK 245
PL Y P S S P P + T K
Sbjct: 423 ------------PLPSPYS-PATSTSATEPYPLSITARK 500
>TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, partial (4%)
Length = 622
Score = 29.6 bits (65), Expect = 0.66
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +3
Query: 150 PPTLPQSEHFTGPFNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSS 197
PP PQ H P R S S T L + P G PPH + S
Sbjct: 225 PPPPPQQPH-PPPMMRQPSASSTNLAPEFHHPGPGGPPPPHYDVHSDS 365
>TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Arabidopsis
thaliana;}, partial (23%)
Length = 507
Score = 29.3 bits (64), Expect = 0.86
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 130 LLLPLNDKVQWTSHNVASSEPPTLPQSEHFTGPFNRL-----RSRSLTELTTQIAPPNKN 184
+L P + W S N +++ P T+P + + T P ++ R+ SLT +T ++
Sbjct: 42 ILFPT**RTAWASSNSSATAPSTVPTTSNSTPPPSKTTLSPSRTASLTRNSTSLSASTNP 221
Query: 185 GHAPP 189
H P
Sbjct: 222 LHKTP 236
>TC15505 gb|M82900.1|TOBCP16SRD Nicotiana plumbaginifolia 16S rRNA gene,
partial (43%)
Length = 668
Score = 29.3 bits (64), Expect = 0.86
Identities = 29/108 (26%), Positives = 39/108 (35%), Gaps = 2/108 (1%)
Frame = +2
Query: 197 SQSVNPYYVWTCCSSFINPRISPLTMKYECP--QLSLSIITPMPKAKTIGKERIASKRDE 254
S SV P + SF + RISPL K+ P SL + T P
Sbjct: 395 SVSVGPAECFRRWCSFRSLRISPLHRKFPLPLPYSSLVVSTTCPGLSP------------ 538
Query: 255 PTGEHQRQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDP 302
R ++ Y F N+ R +YRGCWH+ + P
Sbjct: 539 -------GI*RRT*KATYRRFTPNHSG*RLHPLSYRGCWHRVSRCLFP 661
>TC9092 similar to UP|O82700 (O82700) MtN6 protein, partial (89%)
Length = 1695
Score = 28.5 bits (62), Expect = 1.5
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 210 SSFINPRISP-LTMKYECPQLSLSIITPMPKAKTIGKERIASKRDEPTGEHQRQTDRPNP 268
+SF +I P L +K C +S ++ PMP +K++ + A K
Sbjct: 523 ASFSTLKILPTLGIKLLCHSISCTLSIPMPSSKSMAENLPALK----------------- 395
Query: 269 RSNYELFNCNNLNIRYWS 286
+ EL CN L +RY S
Sbjct: 394 --HVELIECNPLTLRYSS 347
>TC9115 similar to PIR|T00425|T00425 photolyase/blue-light receptor (PHR2)
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (55%)
Length = 1018
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 143 HNVASSEPPTLPQSE---HFTGPFNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSSQS 199
H+ PP+ P S H P N +RS ++ PP+ H+PP R+ +
Sbjct: 160 HHSPFHSPPSSPSSNPNSHHLLPHNNNPTRSKSQPKP---PPSPTSHSPPPPHPRRPNPP 330
Query: 200 VNP 202
NP
Sbjct: 331 SNP 339
>TC14215 similar to UP|Q9FYM1 (Q9FYM1) F21J9.8, partial (8%)
Length = 1096
Score = 28.1 bits (61), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 105 ISLRSSSMRDDNDSSAGSPTETLLRLLLPLNDKVQW 140
+ R + ++ + + +P ETLLRLL P DK+ W
Sbjct: 358 VPFRVTEIKGEQSTILQNPNETLLRLLFP--DKLPW 459
>BP062862
Length = 453
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 176 TQIAPPNKNGHAPPHIE-SRKSSQSVNPYYVWTCCSSFINPRISPLTMKYECP 227
T +PP+ H+PPH+E S + S+S + + + +F+ SP K P
Sbjct: 28 TPPSPPHPPRHSPPHMEMSMEDSRSYDEFLLSMVLGAFLRFGRSPRFSKNSIP 186
>TC19664 similar to UP|Q9ZSQ7 (Q9ZSQ7) Protein phosphatase 2C homolog,
partial (9%)
Length = 426
Score = 28.1 bits (61), Expect = 1.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 171 LTELTTQIAPPNKNGHAPPHIESRKSSQS 199
LTE+ + I+PP + P HI++ KS+Q+
Sbjct: 246 LTEIASLISPPKQPAIFPVHIQTCKSNQT 160
>BP038038
Length = 464
Score = 27.7 bits (60), Expect = 2.5
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 101 TKYRISLRSSSMRDDNDSSAGSPTETLLRLLLPLNDKVQWTSHNVASSEPPTLPQSEHFT 160
T + S+ +SS D+N SSA + T LP+++ +Q N + EP T
Sbjct: 142 TPQKSSIITSS--DNNSSSASNSCNTSFNYSLPMSNSLQ-KKRNGSGQEPGTTANVGRQK 312
Query: 161 GPFNRLRSRSLTELTTQIAPPNKNGHA 187
P+ + ++ + P GHA
Sbjct: 313 PPYKKTKAEN----------PTSTGHA 363
>TC10840 homologue to UP|NDK1_SOYBN (Q39839) Nucleoside diphosphate kinase I
(NDK I) (NDP kinase I) , complete
Length = 540
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = -3
Query: 154 PQSEHFTGPFNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSSQSVNPYYVWTCCSS 211
PQ G FNR+ S + + PP++ S+ ++ W CCS+
Sbjct: 436 PQCNFLVGAFNRIASMN---------------NVPPNVNSKVTTNGSRLRLSWVCCSN 308
>NP459472 RAB7A [Lotus japonicus]
Length = 618
Score = 27.7 bits (60), Expect = 2.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 286 SWNYRGCWHQTCSPM 300
SW Y+G HQ CSP+
Sbjct: 523 SWQYKGMQHQHCSPL 479
>TC9995 similar to PIR|T51820|T51820 F-actin capping protein alpha chain
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 542
Score = 27.3 bits (59), Expect = 3.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 177 QIAPPNKNGHAPPHIESRKSSQSVNPYYVWTCCSSFINPRISPLT 221
++ PN + P ++S + NP+ T CS+ PR SP T
Sbjct: 100 KLKSPNGSSSTLPLVKSNTLPKMSNPFSTTTICSTRQLPRHSPST 234
>AW720005
Length = 497
Score = 26.9 bits (58), Expect = 4.3
Identities = 22/91 (24%), Positives = 36/91 (39%)
Frame = +3
Query: 99 IHTKYRISLRSSSMRDDNDSSAGSPTETLLRLLLPLNDKVQWTSHNVASSEPPTLPQSEH 158
IHT + LRS + ++ P T+ L+P+ ++QW E P L
Sbjct: 111 IHTLQQSKLRSVTA----ETWLTDPNPTVFPFLIPIRSRLQW-------QEQPLLSSYST 257
Query: 159 FTGPFNRLRSRSLTELTTQIAPPNKNGHAPP 189
F S +T ++PP+K + P
Sbjct: 258 SKAAF------SFGAITVAMSPPSKPNASSP 332
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.128 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,490,628
Number of Sequences: 28460
Number of extensions: 108564
Number of successful extensions: 845
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of query: 303
length of database: 4,897,600
effective HSP length: 90
effective length of query: 213
effective length of database: 2,336,200
effective search space: 497610600
effective search space used: 497610600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0026.7