BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.5
(1710 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065719 187 9e-48
BG662087 114 1e-25
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 72 1e-12
BI417841 66 5e-11
BF177840 58 1e-08
TC18698 50 2e-06
BP067158 49 5e-06
AU089582 36 4e-04
AV766686 36 0.058
BP043633 31 1.4
TC12503 homologue to UP|Q9ATD9 (Q9ATD9) BNLGHi233, partial (24%) 30 2.4
TC13834 homologue to UP|Q948R9 (Q948R9) RPS6-like protein (AT3g1... 30 4.2
AU251497 30 4.2
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 29 5.5
AU251886 29 7.1
BP062431 28 9.3
TC9702 28 9.3
AV420911 28 9.3
>BP065719
Length = 567
Score = 187 bits (476), Expect = 9e-48
Identities = 90/93 (96%), Positives = 90/93 (96%)
Frame = +3
Query: 1 MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAES 60
MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVS KDLASVKRKPAES
Sbjct: 288 MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSXKDLASVKRKPAES 467
Query: 61 IDDYLNRFRMLKSRCFTHVPEHELVVLAAGGLE 93
IDDYLNRFRMLKSRCFTHV EHELVVL AGGLE
Sbjct: 468 IDDYLNRFRMLKSRCFTHVSEHELVVLXAGGLE 566
>BG662087
Length = 373
Score = 114 bits (285), Expect = 1e-25
Identities = 57/122 (46%), Positives = 81/122 (65%)
Frame = +1
Query: 741 NGKMRVCIDFRDLNAATPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVS 800
+GK R+ +D+ DLN A PKD Y +P + +VD + +E LSL+D YSGY+QI + D
Sbjct: 13 SGKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDED 192
Query: 801 KTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRD 860
KTAF A Y + +PFGLKNAGATYQ +M+ +F D + M+VY+D+++VKS R
Sbjct: 193 KTAFMT--ARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRA 366
Query: 861 DH 862
+H
Sbjct: 367 NH 372
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/96 (35%), Positives = 52/96 (53%)
Frame = +2
Query: 1481 DQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKHVGRKPKRWHQ 1540
+ G F ++ F + GI++ S+ + Q NGQ EAANK ++ IK+ + RW
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 1541 TLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEV 1576
L VLW+Y P+ + TPF L YG + +LP E+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295
>BI417841
Length = 617
Score = 65.9 bits (159), Expect = 5e-11
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Frame = +1
Query: 1132 LFFDGSSHKN--GTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISGLEILIAFGA 1189
L FDGSS N G G + + G + + N +NN+AEY LI GL+ G
Sbjct: 142 LEFDGSSKGNPGSAGAGAVLRAEDGSKVYLREGVG-NQTNNQAEYRGLILGLKHAHEQGY 318
Query: 1190 KNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSRVDNQEANEL 1249
+++ +KGDS+LV KQ+ +K + N+A +A L +KF ++HV R N EA+
Sbjct: 319 QHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEADVQ 498
Query: 1250 AQIA----SGYMVDKC 1261
A + +G++ + C
Sbjct: 499 ANLGVNLPAGHVEEYC 546
>BF177840
Length = 410
Score = 58.2 bits (139), Expect = 1e-08
Identities = 31/100 (31%), Positives = 49/100 (49%)
Frame = +2
Query: 1477 SLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKHVGRKPK 1536
S+ +D+ T F+ + G KLL ST + Q +GQ E NKTL +L++ + R K
Sbjct: 14 SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193
Query: 1537 RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEV 1576
W L + +AY T +PF + YG + P ++
Sbjct: 194 MWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
>TC18698
Length = 808
Score = 50.4 bits (119), Expect = 2e-06
Identities = 25/56 (44%), Positives = 35/56 (61%)
Frame = -2
Query: 813 YEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRK 868
Y + VMP GLKN TYQR+M+ IFH I ++VY++D++VKS H L +
Sbjct: 771 YYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FHRGDLSR 604
>BP067158
Length = 413
Score = 49.3 bits (116), Expect = 5e-06
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +2
Query: 126 KSTIPAVKTYTFDVTKCDAIYDILVSDG----LLVVPKDQKLPSPEQRKGKKYCKYHNFF 181
K P+ ++ +FDV++ D I+ L + L+ K Q L +QR+GKKYC YH F
Sbjct: 170 KDKRPSKRSGSFDVSRSDQIFYCLFREMA*LIFLLAIKFQLLIRGDQREGKKYC*YHITF 349
Query: 182 GHWTSQCVR 190
GHWT+ V+
Sbjct: 350 GHWTNNYVQ 376
>AU089582
Length = 383
Score = 35.8 bits (81), Expect(2) = 4e-04
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +2
Query: 1466 NHIVYRFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLIS 1525
+ IV G+P S+ +D+G F SF + G +L ST ++ Q +GQ E + L
Sbjct: 38 DEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTIQILED 217
Query: 1526 LIK 1528
+++
Sbjct: 218 MLR 226
Score = 26.2 bits (56), Expect(2) = 4e-04
Identities = 12/36 (33%), Positives = 17/36 (46%)
Frame = +3
Query: 1538 WHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLP 1573
W Q L + +AY NS + + PF YG+ P
Sbjct: 255 WDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSP 362
>AV766686
Length = 536
Score = 35.8 bits (81), Expect = 0.058
Identities = 30/94 (31%), Positives = 41/94 (42%), Gaps = 1/94 (1%)
Frame = -2
Query: 1521 KTLISL-IKKHVGRKPKRWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQ 1579
KTL S+ H R+P+R T G WA R E A F A G LP + Q
Sbjct: 283 KTLFSISYLGHFIRRPRRPPSTFG*TFWANRRFFGETDNAVEFLAAKG*RNNLPLCLRRQ 104
Query: 1580 SCRIQRQEEIPSEDYWNMMLDELVNLDEERLSAL 1613
S R R+ ++P + D+ + LD + S L
Sbjct: 103 SLRQPREPQLP----LRLSTDKFLKLDFHKPSTL 14
>BP043633
Length = 542
Score = 31.2 bits (69), Expect = 1.4
Identities = 18/43 (41%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
Frame = -2
Query: 401 SEV-TENEEDYYDEEEPDDNPLCYYVMQKGSVEDERAIFQRPT 442
SEV TE+E DEEE ++ + KGS E+E A+ PT
Sbjct: 523 SEVGTEDEAGEEDEEEEEEEETAWGGKNKGSTEEEAAVVVAPT 395
>TC12503 homologue to UP|Q9ATD9 (Q9ATD9) BNLGHi233, partial (24%)
Length = 957
Score = 30.4 bits (67), Expect = 2.4
Identities = 15/66 (22%), Positives = 28/66 (41%), Gaps = 3/66 (4%)
Frame = +2
Query: 238 PDAGLPKNQWFKPAPPRPKPYPM---WQKIDLGQRSSYINNSRVSRNCSYGSGNYYAPEQ 294
P+ +P + P PP KP P+ Q + ++N + V++ C G Y P+
Sbjct: 281 PELSIPSSSTTPPPPPPSKPLPVITNHQTLHETTTHHHLNIASVNQECDEGQYQYQQPQA 460
Query: 295 MTRTQF 300
+ +
Sbjct: 461 VAAAAY 478
>TC13834 homologue to UP|Q948R9 (Q948R9) RPS6-like protein
(AT3g17170/K14A17_29), partial (13%)
Length = 517
Score = 29.6 bits (65), Expect = 4.2
Identities = 15/49 (30%), Positives = 27/49 (54%)
Frame = +1
Query: 330 RNEPSVASIINQLDHAIKQGATVPPNPAKEKGKDVVEDEDEDMLEDFDD 378
++E + ++ + D AI + PP G V +D+DE++ ED+DD
Sbjct: 49 QDERVIRHLVVKRDEAITEDCPPPPE-FHTLGASVDDDDDEELDEDYDD 192
>AU251497
Length = 354
Score = 29.6 bits (65), Expect = 4.2
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = +2
Query: 4 FPSSLTKNAFTWFTTLAPRSVHTWAQLERIF 34
FPSS T++ F L PRSVH L+R F
Sbjct: 119 FPSSQTRSGFKGAYLLLPRSVHRLLPLDRRF 211
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 29.3 bits (64), Expect = 5.5
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 359 EKGKDVVEDEDEDMLEDFDDSEGKDLNIICIVSILPAEFDRISEVTENEEDYYDEEEPD 417
E G+D +D+D+D +D +D G+D E + E +NE++ DEE+ +
Sbjct: 416 EDGEDQEDDDDDDEDDDEEDDGGED------------EEEEGVEEEDNEDEEEDEEDEE 276
>AU251886
Length = 347
Score = 28.9 bits (63), Expect = 7.1
Identities = 9/26 (34%), Positives = 19/26 (72%)
Frame = +1
Query: 439 QRPTEQMKSHLKPLFVWAKVDEKGVN 464
++PT+ M HLKP++V +++K ++
Sbjct: 268 RKPTKDMTKHLKPIYVTTHINDKSMS 345
>BP062431
Length = 482
Score = 28.5 bits (62), Expect = 9.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 1161 FRIKKNCSNNEAEYEALISGLEIL 1184
F+ CSNNEAE A++ GL +L
Sbjct: 405 FQFFGRCSNNEAELRAILEGLLVL 334
>TC9702
Length = 927
Score = 28.5 bits (62), Expect = 9.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 239 DAGLPKNQWFKPA--PPRPKPYPMWQKIDLGQRSSYINNSRVSRN 281
D G + W PA PPR P + D G++ S + SR SRN
Sbjct: 313 DLGE*RQVWTSPATSPPRNSPPAAVKATDSGEKLSKLRFSRFSRN 447
>AV420911
Length = 418
Score = 28.5 bits (62), Expect = 9.3
Identities = 30/119 (25%), Positives = 49/119 (40%), Gaps = 19/119 (15%)
Frame = -2
Query: 241 GLPKNQWFKPAPPRPKPYP------------------MWQKIDLGQRSSYINNSRVSRNC 282
G P + F+ +PPRP+P P K + +S ++++ SRN
Sbjct: 393 GSPHS*HFRSSPPRPRPPPRPPPPPLEL*ESSTRQPFFPSKAWIASSASLLSSN--SRNA 220
Query: 283 SYGSGNYYAPEQMTRTQFRRFLRKRKTERERGGKFRS-LWDIKPEDNLRNEPSVASIIN 340
G A + + RT ++R R RG KF + DI P ++EP + I+
Sbjct: 219 Y--PGGLRATQTLRRTPYKRNSSSRSLSETRGSKFPT*TRDIVP----KSEPPYRNFIS 61
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,040,964
Number of Sequences: 28460
Number of extensions: 404664
Number of successful extensions: 2154
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2147
length of query: 1710
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1607
effective length of database: 1,966,220
effective search space: 3159715540
effective search space used: 3159715540
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0026.5